Wall clock time and date at job start Wed Apr 1 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46506 * 2 1 4 4 O 1.42898 * 109.47070 * 119.99468 * 2 1 3 5 5 C 1.52991 * 109.47184 * 239.99931 * 2 1 3 6 6 N 1.46897 * 109.47215 * 302.05372 * 5 2 1 7 7 C 1.46904 * 111.00479 * 274.15494 * 6 5 2 8 8 C 1.53230 * 109.34369 * 172.74614 * 7 6 5 9 9 N 1.47080 * 108.52554 * 53.82925 * 8 7 6 10 10 C 1.34777 * 120.88430 * 128.79019 * 9 8 7 11 11 O 1.21575 * 119.99809 * 185.72790 * 10 9 8 12 12 N 1.34772 * 119.99694 * 5.72835 * 10 9 8 13 13 C 1.39248 * 119.99777 * 187.95421 * 12 10 9 14 14 C 1.39478 * 119.83092 * 39.26746 * 13 12 10 15 15 C 1.36376 * 120.16749 * 179.75447 * 14 13 12 16 16 C 1.40863 * 119.82857 * 0.52090 * 15 14 13 17 17 C 1.41155 * 120.16800 * 179.71398 * 16 15 14 18 18 H 1.07996 * 120.00538 * 210.01053 * 17 16 15 19 19 C 1.39901 * 119.99874 * 30.01655 * 17 16 15 20 20 N 1.30888 * 119.99663 * 9.15376 * 19 17 16 21 21 Si 1.86788 * 120.00098 * 189.15854 * 19 17 16 22 22 H 1.48497 * 109.47442 * 89.99689 * 21 19 17 23 23 H 1.48505 * 109.47327 * 209.99664 * 21 19 17 24 24 H 1.48500 * 109.47116 * 329.99460 * 21 19 17 25 25 C 1.40871 * 119.67134 * 359.73493 * 16 15 14 26 26 C 1.36377 * 119.83184 * 0.02562 * 25 16 15 27 27 C 1.47088 * 118.23600 * 308.81830 * 9 8 7 28 28 C 1.46900 * 111.00213 * 149.85084 * 6 5 2 29 29 H 1.08998 * 109.47353 * 299.99938 * 1 2 3 30 30 H 1.08996 * 109.47197 * 60.00734 * 1 2 3 31 31 H 1.09008 * 109.46721 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46322 * 184.84765 * 3 2 1 33 33 H 1.08998 * 109.47000 * 304.84331 * 3 2 1 34 34 H 1.08996 * 109.47368 * 64.85200 * 3 2 1 35 35 H 0.96702 * 114.00060 * 43.43113 * 4 2 1 36 36 H 1.08997 * 109.47826 * 62.05605 * 5 2 1 37 37 H 1.09006 * 109.46943 * 182.05831 * 5 2 1 38 38 H 1.09004 * 109.48832 * 292.70706 * 7 6 5 39 39 H 1.09005 * 109.49198 * 52.78230 * 7 6 5 40 40 H 1.09002 * 109.62803 * 294.11992 * 8 7 6 41 41 H 1.09003 * 109.62971 * 173.53624 * 8 7 6 42 42 H 0.96995 * 120.00279 * 7.96221 * 12 10 9 43 43 H 1.08003 * 119.91831 * 0.02562 * 14 13 12 44 44 H 1.08002 * 120.08715 * 180.24975 * 15 14 13 45 45 H 0.96998 * 119.99485 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.09003 * 179.97438 * 25 16 15 47 47 H 1.07996 * 119.91825 * 179.97438 * 26 25 16 48 48 H 1.08994 * 109.62326 * 291.47360 * 27 9 8 49 49 H 1.08999 * 109.78897 * 170.98344 * 27 9 8 50 50 H 1.08997 * 109.49512 * 307.21932 * 28 6 5 51 51 H 1.09001 * 109.49099 * 67.29460 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 1.5103 -2.0911 -1.2742 7 6 2.3656 -3.0007 -0.5001 8 6 1.6883 -4.3715 -0.3993 9 7 1.3599 -4.8315 -1.7571 10 6 1.7268 -6.0576 -2.1798 11 8 1.5400 -6.3831 -3.3362 12 7 2.3006 -6.9228 -1.3204 13 6 2.8294 -8.1225 -1.7896 14 6 3.5147 -8.1509 -3.0041 15 6 4.0397 -9.3211 -3.4676 16 6 3.8789 -10.5052 -2.7218 17 6 4.4141 -11.7215 -3.1978 18 1 3.9332 -12.6565 -2.9509 19 6 5.5676 -11.7159 -3.9893 20 7 6.2517 -10.6104 -4.1411 21 14 6.1314 -13.2860 -4.8296 22 1 5.5090 -13.3786 -6.1747 23 1 7.6098 -13.2699 -4.9684 24 1 5.7236 -14.4579 -4.0138 25 6 3.1808 -10.4696 -1.4987 26 6 2.6657 -9.2910 -1.0456 27 6 0.6212 -3.9178 -2.6418 28 6 1.3405 -2.5648 -2.6544 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1265 1.4438 -0.0869 33 1 1.6074 1.9808 -0.8434 34 1 1.7493 1.9307 0.9302 35 1 1.5326 -1.4918 1.3696 36 1 1.7072 -0.1867 -2.1388 37 1 3.1295 -0.7533 -1.2309 38 1 3.3289 -3.1068 -0.9991 39 1 2.5164 -2.5949 0.5003 40 1 0.7748 -4.2861 0.1893 41 1 2.3670 -5.0813 0.0737 42 1 2.3452 -6.7099 -0.3752 43 1 3.6337 -7.2429 -3.5767 44 1 4.5736 -9.3407 -4.4062 45 1 7.0513 -10.6065 -4.6902 46 1 3.0532 -11.3735 -0.9216 47 1 2.1299 -9.2622 -0.1084 48 1 -0.3948 -3.7888 -2.2688 49 1 0.5913 -4.3260 -3.6521 50 1 0.7479 -1.8430 -3.2164 51 1 2.3181 -2.6769 -3.1232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109156989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:11 Heat of formation + Delta-G solvation = -59.654608 kcal Electronic energy + Delta-G solvation = -30752.409687 eV Core-core repulsion = 26650.976089 eV Total energy + Delta-G solvation = -4101.433598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.72761 -40.30119 -39.28166 -38.05036 -36.23630 -35.45717 -34.60256 -33.24795 -32.16154 -31.44588 -30.77031 -28.99494 -28.12266 -26.79521 -25.38001 -24.77491 -23.32753 -22.98473 -21.92128 -21.20082 -20.41475 -19.41510 -19.20602 -18.03031 -17.73182 -17.19351 -16.77967 -16.55448 -16.30362 -16.07503 -15.75980 -15.66492 -15.42292 -15.05740 -14.87778 -14.82259 -14.49951 -14.23046 -13.94588 -13.79002 -13.57402 -13.36533 -13.27336 -13.03512 -12.92221 -12.86013 -12.80132 -12.62562 -12.49762 -12.47094 -12.33658 -12.31156 -12.10311 -11.65580 -11.52048 -11.44116 -11.20487 -11.06524 -10.87876 -10.68237 -9.77411 -9.46496 -9.33238 -8.78098 -8.54219 -6.29487 0.84522 1.13459 1.38707 1.46997 1.52651 1.65492 2.15374 2.22980 2.77189 2.79478 3.00416 3.36820 3.72026 3.81449 3.87818 3.97334 4.02748 4.18228 4.20992 4.26648 4.34695 4.41024 4.43863 4.47786 4.55808 4.71476 4.76199 4.78130 4.83029 4.84004 4.95555 4.97817 5.04505 5.08600 5.10688 5.16102 5.20754 5.30811 5.33037 5.42165 5.49389 5.50502 5.65166 5.76012 5.92249 5.95340 6.06561 6.12109 6.15210 6.35647 6.68799 6.88939 6.94806 6.99762 7.01770 7.62474 8.39679 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.001930 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.115866 B =14506.018753 C =14616.953094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 C -0.143 4.143 4 O -0.576 6.576 5 C 0.033 3.967 6 N -0.524 5.524 7 C 0.038 3.962 8 C 0.112 3.888 9 N -0.627 5.627 10 C 0.695 3.305 11 O -0.627 6.627 12 N -0.660 5.660 13 C 0.035 3.965 14 C -0.100 4.100 15 C -0.169 4.169 16 C 0.070 3.930 17 C -0.494 4.494 18 H 0.080 0.920 19 C 0.026 3.974 20 N -0.839 5.839 21 Si 0.987 3.013 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.254 1.254 25 C -0.214 4.214 26 C -0.103 4.103 27 C 0.134 3.866 28 C 0.049 3.951 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.385 0.615 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.016 0.984 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.411 0.589 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.284 0.716 46 H 0.113 0.887 47 H 0.134 0.866 48 H 0.090 0.910 49 H 0.071 0.929 50 H 0.110 0.890 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 22.363 10.043 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.094 3.906 3 C -0.200 4.200 4 O -0.386 6.386 5 C -0.095 4.095 6 N -0.248 5.248 7 C -0.091 4.091 8 C -0.011 4.011 9 N -0.365 5.365 10 C 0.397 3.603 11 O -0.507 6.507 12 N -0.310 5.310 13 C -0.059 4.059 14 C -0.120 4.120 15 C -0.189 4.189 16 C 0.068 3.932 17 C -0.525 4.525 18 H 0.098 0.902 19 C -0.187 4.187 20 N -0.466 5.466 21 Si 0.808 3.192 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.178 1.178 25 C -0.234 4.234 26 C -0.123 4.123 27 C 0.011 3.989 28 C -0.079 4.079 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.250 0.750 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.131 0.869 47 H 0.152 0.848 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.128 0.872 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.888 22.779 9.351 26.535 hybrid contribution 1.186 -1.045 -0.839 1.790 sum -8.702 21.734 8.511 24.911 Atomic orbital electron populations 1.22312 0.94039 1.03427 1.02289 1.21234 0.93979 0.91739 0.83606 1.21810 1.01382 0.93658 1.03197 1.86531 1.63472 1.42231 1.46364 1.22835 0.97618 0.89078 1.00011 1.61979 1.48649 1.01886 1.12278 1.22766 0.93278 0.92535 1.00524 1.22011 1.01669 0.95151 0.82254 1.47368 1.60101 1.12654 1.16411 1.16142 0.78215 0.81456 0.84474 1.90893 1.62474 1.78103 1.19246 1.42038 1.60770 1.17645 1.10581 1.17012 1.05066 0.85514 0.98263 1.20340 0.98177 0.96886 0.96641 1.20894 1.04155 0.93176 1.00680 1.18013 0.90743 0.93602 0.90877 1.19786 1.09520 0.94089 1.29065 0.90200 1.26817 0.95718 1.01266 0.94888 1.69906 1.14534 1.30105 1.32039 0.85122 0.77710 0.77580 0.78770 1.19115 1.19411 1.17782 1.20878 1.07949 0.97497 0.97063 1.20409 1.00832 0.90683 1.00352 1.21601 0.95363 0.87367 0.94566 1.22503 0.99145 0.96400 0.89892 0.92547 0.91354 0.90966 0.92931 0.89740 0.91786 0.76366 0.89151 0.94807 0.96522 0.86383 0.88023 0.89412 0.75012 0.90109 0.88457 0.90521 0.86894 0.84775 0.89186 0.91079 0.87193 0.96464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.48 71.98 0.61 -0.90 16 2 C 0.14 1.54 1.22 -10.79 -0.01 1.52 16 3 C -0.14 -1.49 8.84 71.98 0.64 -0.86 16 4 O -0.58 -7.87 11.72 -148.98 -1.75 -9.62 16 5 C 0.03 0.42 4.40 86.30 0.38 0.80 16 6 N -0.52 -7.26 3.62 -895.27 -3.24 -10.50 16 7 C 0.04 0.58 5.13 86.38 0.44 1.02 16 8 C 0.11 1.84 6.47 86.35 0.56 2.40 16 9 N -0.63 -16.02 3.01 -835.95 -2.52 -18.53 16 10 C 0.69 25.50 7.95 179.06 1.42 26.93 16 11 O -0.63 -29.61 14.01 -3.95 -0.06 -29.66 16 12 N -0.66 -23.24 5.12 -316.79 -1.62 -24.86 16 13 C 0.04 1.60 6.15 38.56 0.24 1.83 16 14 C -0.10 -5.28 8.57 22.13 0.19 -5.09 16 15 C -0.17 -9.68 8.59 22.48 0.19 -9.49 16 16 C 0.07 3.93 5.54 -21.28 -0.12 3.81 16 17 C -0.49 -27.39 9.04 23.39 0.21 -27.18 16 18 H 0.08 4.20 7.86 -2.91 -0.02 4.17 16 19 C 0.03 1.35 5.27 85.24 0.45 1.80 16 20 N -0.84 -46.21 10.83 21.82 0.24 -45.98 16 21 Si 0.99 39.81 29.57 68.60 2.03 41.83 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 25 C -0.21 -10.42 9.74 22.48 0.22 -10.20 16 26 C -0.10 -4.40 9.90 22.14 0.22 -4.18 16 27 C 0.13 2.94 6.61 86.35 0.57 3.51 16 28 C 0.05 0.85 5.53 86.38 0.48 1.32 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.72 7.55 -2.38 -0.02 0.71 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.39 3.49 7.02 -74.06 -0.52 2.97 16 36 H 0.09 0.95 7.61 -2.39 -0.02 0.93 16 37 H 0.03 0.54 7.85 -2.38 -0.02 0.52 16 38 H 0.02 0.34 8.14 -2.38 -0.02 0.33 16 39 H 0.12 1.37 4.99 -2.38 -0.01 1.36 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.36 5.91 -2.39 -0.01 1.35 16 42 H 0.41 10.78 6.55 -92.71 -0.61 10.18 16 43 H 0.08 4.38 6.92 -2.91 -0.02 4.36 16 44 H 0.10 5.93 6.25 -2.91 -0.02 5.91 16 45 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 46 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 47 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 1.97 7.05 -2.39 -0.02 1.95 16 50 H 0.11 1.37 7.87 -2.39 -0.02 1.35 16 51 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -73.25 397.74 -0.40 -73.65 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.18 Total: 36.61 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 6.69 Total: -12.94 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -7.14 Total: -99.87 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -1.80 Total: -39.28 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Total: -73.25 -0.40 -73.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109156989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.993 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds