Wall clock time and date at job start Wed Apr 1 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.52999 * 109.47210 * 120.00576 * 2 1 3 5 5 N 1.46898 * 109.47187 * 174.99797 * 4 2 1 6 6 C 1.46855 * 111.00014 * 294.20850 * 5 4 2 7 7 C 1.53036 * 109.52633 * 174.15910 * 6 5 4 8 8 C 1.53118 * 109.27541 * 59.17611 * 7 6 5 9 9 C 1.53117 * 109.16589 * 302.34938 * 8 7 6 10 10 H 1.08998 * 109.50060 * 297.71350 * 9 8 7 11 11 C 1.52998 * 109.50520 * 177.59855 * 9 8 7 12 12 N 1.46498 * 109.47520 * 65.19190 * 11 9 8 13 13 S 1.65603 * 119.99852 * 164.57529 * 12 11 9 14 14 O 1.42099 * 106.39615 * 176.42738 * 13 12 11 15 15 O 1.42099 * 106.40304 * 309.34525 * 13 12 11 16 16 N 1.65595 * 107.21583 * 62.88767 * 13 12 11 17 17 C 1.46498 * 120.00101 * 273.26668 * 16 13 12 18 18 C 1.46504 * 120.00190 * 93.27069 * 16 13 12 19 19 C 1.50701 * 109.47069 * 95.62327 * 18 16 13 20 20 H 1.08000 * 120.00029 * 4.74679 * 19 18 16 21 21 C 1.37882 * 119.99699 * 184.73478 * 19 18 16 22 22 N 1.31512 * 119.99906 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99703 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46763 * 120.00941 * 23 21 19 26 26 H 1.48497 * 109.47448 * 240.00263 * 23 21 19 27 27 C 1.46843 * 111.00452 * 170.00004 * 5 4 2 28 28 H 1.09011 * 109.46566 * 299.99664 * 1 2 3 29 29 H 1.09000 * 109.47665 * 59.99560 * 1 2 3 30 30 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46804 * 239.99892 * 2 1 3 32 32 H 1.09000 * 109.46811 * 300.00327 * 3 2 1 33 33 H 1.09002 * 109.46883 * 60.00784 * 3 2 1 34 34 H 1.09002 * 109.46628 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47553 * 54.99380 * 4 2 1 36 36 H 1.08997 * 109.47118 * 294.99385 * 4 2 1 37 37 H 1.09003 * 109.45954 * 294.17812 * 6 5 4 38 38 H 1.08996 * 109.45848 * 54.14280 * 6 5 4 39 39 H 1.08999 * 109.50181 * 299.23991 * 7 6 5 40 40 H 1.08992 * 109.50193 * 179.11695 * 7 6 5 41 41 H 1.09002 * 109.52521 * 182.44059 * 8 7 6 42 42 H 1.09006 * 109.52317 * 62.25194 * 8 7 6 43 43 H 1.09003 * 109.46901 * 185.19623 * 11 9 8 44 44 H 1.09000 * 109.47242 * 305.19120 * 11 9 8 45 45 H 0.96998 * 119.99539 * 344.58182 * 12 11 9 46 46 H 1.08993 * 109.47328 * 90.00059 * 17 16 13 47 47 H 1.09002 * 109.47310 * 210.00581 * 17 16 13 48 48 H 1.09004 * 109.47087 * 330.00332 * 17 16 13 49 49 H 1.08996 * 109.46920 * 215.62755 * 18 16 13 50 50 H 1.09004 * 109.46735 * 335.62815 * 18 16 13 51 51 H 0.97006 * 119.99721 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.45690 * 305.85555 * 27 5 4 53 53 H 1.09003 * 109.46441 * 65.82675 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1903 6 6 3.9250 -1.6946 0.0829 7 6 5.4503 -1.6654 -0.0384 8 6 6.0712 -2.1462 1.2760 9 6 5.5787 -1.2555 2.4200 10 1 5.9099 -0.2308 2.2518 11 6 6.1471 -1.7657 3.7457 12 7 7.6043 -1.6148 3.7427 13 16 8.4505 -1.7198 5.1623 14 8 9.8254 -1.6173 4.8182 15 8 7.8106 -0.8406 6.0769 16 7 8.2291 -3.2510 5.7527 17 6 7.0684 -3.5507 6.5948 18 6 9.1940 -4.3061 5.4331 19 6 10.1991 -4.4228 6.5499 20 1 10.0827 -3.8302 7.4452 21 6 11.2671 -5.2864 6.4286 22 7 11.4089 -6.0077 5.3382 23 14 12.5133 -5.4305 7.8127 24 1 12.1302 -4.5191 8.9207 25 1 12.5409 -6.8295 8.3100 26 1 13.8592 -5.0581 7.3078 27 6 4.0498 -1.2966 2.4700 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6768 1.9563 0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6053 -1.7199 1.2951 36 1 1.7517 -0.1585 2.1369 37 1 3.5955 -2.7155 0.2761 38 1 3.4799 -1.3392 -0.8464 39 1 5.7794 -0.6471 -0.2453 40 1 5.7634 -2.3217 -0.8503 41 1 7.1575 -2.0859 1.2093 42 1 5.7736 -3.1779 1.4636 43 1 5.7238 -1.1894 4.5683 44 1 5.8912 -2.8180 3.8699 45 1 8.0734 -1.4532 2.9092 46 1 6.2364 -3.8690 5.9668 47 1 7.3223 -4.3480 7.2933 48 1 6.7829 -2.6578 7.1510 49 1 8.6697 -5.2544 5.3154 50 1 9.7093 -4.0581 4.5050 51 1 12.1605 -6.6150 5.2528 52 1 3.6952 -0.6522 3.2744 53 1 3.7198 -2.3195 2.6520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120314762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:40 Heat of formation + Delta-G solvation = -118.353363 kcal Electronic energy + Delta-G solvation = -29922.386791 eV Core-core repulsion = 25953.851775 eV Total energy + Delta-G solvation = -3968.535016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.42885 -38.28235 -37.63068 -37.19385 -36.82638 -35.70379 -34.50034 -33.10102 -31.92713 -29.65537 -27.89444 -27.16633 -26.83492 -26.49205 -24.20592 -23.81618 -22.91506 -20.76532 -20.48934 -20.26385 -18.93934 -18.42157 -18.19762 -17.45524 -17.03230 -16.65093 -16.16197 -16.06198 -15.66041 -15.50748 -15.20946 -14.98970 -14.87633 -14.80187 -14.27737 -14.10073 -14.06208 -13.96183 -13.74003 -13.33064 -13.29396 -13.23147 -13.10248 -13.01591 -12.93649 -12.92862 -12.70909 -12.50745 -12.46374 -12.36287 -12.07287 -11.97843 -11.82244 -11.79987 -11.73100 -11.64966 -11.46431 -11.20178 -11.01430 -10.61065 -10.43797 -9.76868 -9.18918 -8.20836 -6.32571 -0.28937 1.37842 1.40617 1.52055 2.07002 2.40085 2.67129 2.93397 3.10331 3.49603 3.75902 3.77616 3.93508 3.97812 4.11058 4.11835 4.23106 4.30690 4.33716 4.46107 4.51732 4.56849 4.62665 4.68850 4.74884 4.77032 4.80040 4.81318 4.88168 4.89161 4.91918 4.96684 5.05324 5.08509 5.11472 5.14159 5.18417 5.20984 5.23445 5.32813 5.34695 5.46225 5.49684 5.52131 5.57971 5.70884 5.88141 6.09482 6.16526 6.20297 6.22794 6.76429 7.36388 8.86878 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.002207 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.712297 B =12681.228828 C =12947.819760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.134 4.134 4 C 0.061 3.939 5 N -0.541 5.541 6 C 0.055 3.945 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.081 4.081 10 H 0.083 0.917 11 C 0.119 3.881 12 N -1.118 6.118 13 S 2.800 3.200 14 O -1.013 7.013 15 O -1.010 7.010 16 N -1.002 6.002 17 C 0.087 3.913 18 C 0.272 3.728 19 C -0.550 4.550 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.957 3.043 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.280 1.280 27 C 0.064 3.936 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.420 0.580 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.028 0.972 50 H 0.019 0.981 51 H 0.267 0.733 52 H 0.082 0.918 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.917 9.274 -12.427 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.192 4.192 4 C -0.067 4.067 5 N -0.265 5.265 6 C -0.073 4.073 7 C -0.150 4.150 8 C -0.158 4.158 9 C -0.101 4.101 10 H 0.101 0.899 11 C -0.007 4.007 12 N -0.881 5.881 13 S 2.808 3.192 14 O -0.997 6.997 15 O -0.994 6.994 16 N -0.844 5.844 17 C -0.059 4.059 18 C 0.148 3.852 19 C -0.589 4.589 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.782 3.218 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.206 1.206 27 C -0.064 4.064 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.255 0.745 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.046 0.954 50 H 0.037 0.963 51 H 0.076 0.924 52 H 0.101 0.899 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.230 10.259 -11.993 27.263 hybrid contribution 0.755 -1.351 0.298 1.576 sum -21.475 8.908 -11.694 26.025 Atomic orbital electron populations 1.21801 0.94407 1.01850 1.02209 1.21133 0.95670 0.96813 0.97435 1.21673 1.01346 0.95176 1.00971 1.22192 0.86347 0.98941 0.99195 1.61861 1.10113 1.50908 1.03619 1.22153 0.95893 0.94366 0.94895 1.21545 0.94479 1.01980 0.97010 1.21675 1.00430 0.99013 0.94700 1.21267 0.95141 1.00655 0.93032 0.89885 1.21443 0.77953 1.01652 0.99635 1.55765 1.16862 1.89570 1.25929 1.01130 0.71879 0.72811 0.73383 1.93570 1.34755 1.86881 1.84513 1.93498 1.77895 1.64161 1.63813 1.57456 1.34786 1.28552 1.63621 1.21614 0.86564 1.02634 0.95072 1.18612 0.85815 0.85825 0.94960 1.21890 1.09876 1.23550 1.03612 0.92896 1.25770 0.99519 0.95231 0.98421 1.70015 1.31609 1.26650 1.28046 0.85524 0.78695 0.78298 0.79287 1.19357 1.19456 1.20605 1.22006 0.93342 0.99167 0.91931 0.92497 0.92100 0.92642 0.91316 0.93057 0.93262 0.92700 0.94915 0.90639 0.95211 0.89884 0.91418 0.90720 0.91966 0.92030 0.90213 0.90953 0.74453 0.90718 0.91197 0.90675 0.95439 0.96292 0.92399 0.89910 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 71.98 0.66 -0.70 16 2 C -0.09 -1.05 2.84 -10.79 -0.03 -1.08 16 3 C -0.13 -1.69 9.08 71.98 0.65 -1.03 16 4 C 0.06 0.78 4.35 86.30 0.38 1.16 16 5 N -0.54 -8.12 4.11 -896.37 -3.69 -11.80 16 6 C 0.05 0.78 5.30 86.32 0.46 1.24 16 7 C -0.11 -1.70 6.09 30.65 0.19 -1.52 16 8 C -0.12 -2.14 5.13 30.67 0.16 -1.98 16 9 C -0.08 -1.46 2.46 -10.74 -0.03 -1.48 16 10 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 11 C 0.12 2.61 5.65 86.38 0.49 3.10 16 12 N -1.12 -31.42 5.94 -187.49 -1.11 -32.53 16 13 S 2.80 109.97 6.09 -56.49 -0.34 109.63 16 14 O -1.01 -49.66 16.98 -128.00 -2.17 -51.83 16 15 O -1.01 -41.35 16.34 -128.00 -2.09 -43.45 16 16 N -1.00 -40.90 3.23 -543.22 -1.75 -42.65 16 17 C 0.09 2.78 10.69 127.77 1.37 4.15 16 18 C 0.27 13.78 5.10 85.63 0.44 14.22 16 19 C -0.55 -31.35 9.38 25.60 0.24 -31.11 16 20 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 21 C 0.01 0.58 5.46 84.66 0.46 1.04 16 22 N -0.92 -54.55 13.29 21.45 0.28 -54.26 16 23 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 27 C 0.06 1.01 4.74 86.32 0.41 1.42 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.81 6.22 -2.38 -0.01 0.80 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 35 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 36 H 0.08 0.97 7.99 -2.39 -0.02 0.95 16 37 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 1.06 6.12 -2.39 -0.01 1.05 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.18 6.97 -2.39 -0.02 1.17 16 42 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.08 1.71 7.79 -2.39 -0.02 1.69 16 44 H 0.07 1.46 8.03 -2.39 -0.02 1.44 16 45 H 0.42 10.67 7.45 -96.74 -0.72 9.95 16 46 H 0.07 1.84 8.03 -2.39 -0.02 1.82 16 47 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 48 H 0.07 2.27 7.05 -2.39 -0.02 2.25 16 49 H 0.03 1.40 8.11 -2.39 -0.02 1.38 16 50 H 0.02 1.05 7.49 -2.38 -0.02 1.03 16 51 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 52 H 0.08 1.23 8.02 -2.39 -0.02 1.21 16 53 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -71.15 421.21 -2.87 -74.02 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.14 Total: 18.41 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.84 Total: -12.59 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -6.27 Total: -141.25 kcal Atomic # 8 Polarization: -91.01 SS G_CDS: -4.27 Total: -95.28 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 109.97 SS G_CDS: -0.34 Total: 109.63 kcal Total: -71.15 -2.87 -74.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120314762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.329 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds