Wall clock time and date at job start Wed Apr 1 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47027 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99748 * 270.00252 * 5 4 3 7 7 C 1.39834 * 119.99895 * 90.00320 * 5 4 3 8 8 C 1.38916 * 119.99599 * 179.97438 * 7 5 4 9 9 C 1.38032 * 119.99855 * 179.97438 * 8 7 5 10 10 C 1.38928 * 119.99829 * 0.02562 * 9 8 7 11 11 N 1.39894 * 120.00134 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00023 * 35.09763 * 11 10 9 13 13 O 1.21395 * 120.00006 * 355.38666 * 12 11 10 14 14 C 1.49326 * 119.99944 * 175.38869 * 12 11 10 15 15 O 1.21368 * 119.99907 * 0.02562 * 14 12 11 16 16 N 1.34778 * 119.99944 * 180.02562 * 14 12 11 17 17 C 1.46495 * 119.99941 * 180.02562 * 16 14 12 18 18 H 1.09006 * 109.47255 * 324.99429 * 17 16 14 19 19 C 1.52993 * 109.47388 * 84.99848 * 17 16 14 20 20 C 1.50700 * 109.46968 * 204.99982 * 17 16 14 21 21 H 1.07994 * 120.00249 * 359.97438 * 20 17 16 22 22 C 1.37884 * 119.99838 * 179.97438 * 20 17 16 23 23 N 1.31513 * 120.00074 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 119.99624 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47127 * 270.00275 * 24 22 20 26 26 H 1.48498 * 109.47601 * 30.00523 * 24 22 20 27 27 H 1.48501 * 109.46955 * 150.00537 * 24 22 20 28 28 C 1.38931 * 119.99998 * 0.24490 * 10 9 8 29 29 C 1.38028 * 119.99464 * 359.47396 * 28 10 9 30 30 H 1.08997 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47096 * 300.00461 * 1 2 3 32 32 H 1.09008 * 109.46671 * 60.00033 * 1 2 3 33 33 H 1.09007 * 109.47331 * 239.99765 * 2 1 3 34 34 H 1.09001 * 109.46724 * 120.00375 * 2 1 3 35 35 H 1.09000 * 109.47011 * 60.00308 * 3 2 1 36 36 H 1.08994 * 109.47191 * 299.99736 * 3 2 1 37 37 H 1.09005 * 109.47012 * 60.00616 * 4 3 2 38 38 H 1.08994 * 109.47283 * 300.00166 * 4 3 2 39 39 H 1.09003 * 109.46971 * 269.99838 * 6 5 4 40 40 H 1.09001 * 109.47569 * 30.00215 * 6 5 4 41 41 H 1.08997 * 109.46872 * 150.00003 * 6 5 4 42 42 H 1.07991 * 120.00209 * 359.97438 * 8 7 5 43 43 H 1.08002 * 119.99930 * 179.97438 * 9 8 7 44 44 H 0.96995 * 119.99745 * 215.10238 * 11 10 9 45 45 H 0.97001 * 120.00028 * 359.97438 * 16 14 12 46 46 H 1.09002 * 109.47487 * 179.97438 * 19 17 16 47 47 H 1.09000 * 109.47431 * 299.99783 * 19 17 16 48 48 H 1.08996 * 109.47096 * 60.00147 * 19 17 16 49 49 H 0.97001 * 119.99880 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.00249 * 179.74725 * 28 10 9 51 51 H 1.08001 * 119.99974 * 180.26998 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.3031 3.5146 -1.2672 7 6 4.2911 3.4824 1.2126 8 6 4.7547 4.7919 1.2131 9 6 4.9838 5.4424 2.4087 10 6 4.7513 4.7873 3.6116 11 7 4.9840 5.4464 4.8234 12 6 4.7398 6.7676 4.9298 13 8 4.3981 7.4022 3.9529 14 6 4.8895 7.4507 6.2491 15 8 5.2315 6.8163 7.2256 16 7 4.6447 8.7718 6.3556 17 6 4.7921 9.4421 7.6498 18 1 4.4892 8.7633 8.4471 19 6 6.2540 9.8457 7.8516 20 6 3.9224 10.6725 7.6802 21 1 3.3205 10.9296 6.8212 22 6 3.8953 11.4699 8.8047 23 7 4.6286 11.1570 9.8506 24 14 2.8167 12.9946 8.8426 25 1 3.5882 14.1592 8.3387 26 1 1.6257 12.7800 7.9820 27 1 2.3790 13.2567 10.2372 28 6 4.2930 3.4758 3.6110 29 6 4.0584 2.8274 2.4153 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9338 0.9285 -0.8892 38 1 3.9330 0.9287 0.8908 39 1 5.3327 3.3434 -1.5815 40 1 3.6226 3.1308 -2.0272 41 1 4.1361 4.5837 -1.1366 42 1 4.9358 5.3010 0.2781 43 1 5.3446 6.4604 2.4092 44 1 5.3212 4.9525 5.5871 45 1 4.3717 9.2789 5.5751 46 1 6.3636 10.3449 8.8144 47 1 6.8830 8.9558 7.8297 48 1 6.5568 10.5245 7.0544 49 1 4.6098 11.7182 10.6416 50 1 4.1162 2.9651 4.5461 51 1 3.6980 1.8093 2.4148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123079778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:34 Heat of formation + Delta-G solvation = -44.127244 kcal Electronic energy + Delta-G solvation = -29486.246847 eV Core-core repulsion = 25385.486566 eV Total energy + Delta-G solvation = -4100.760281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70071 -39.56360 -38.20904 -37.00021 -35.37778 -34.93405 -33.85367 -32.38104 -31.31738 -29.80757 -29.23910 -28.93580 -26.27637 -25.32554 -24.74962 -23.35501 -22.60155 -21.60204 -21.15505 -20.35997 -19.55178 -18.59513 -17.83949 -16.92692 -16.40406 -16.01753 -15.63092 -15.62253 -15.37859 -15.17331 -14.98929 -14.55362 -14.23065 -14.00706 -13.81467 -13.75430 -13.40527 -13.21347 -13.09313 -12.93711 -12.67688 -12.55214 -12.46207 -12.28874 -11.79416 -11.77506 -11.69977 -11.47628 -11.23600 -11.15533 -11.02819 -10.97952 -10.91748 -10.77882 -10.53051 -10.35515 -10.25960 -9.16640 -9.13170 -9.07580 -8.91123 -8.61356 -8.10546 -7.18664 -6.16219 -4.25593 1.28796 1.39335 2.01408 2.77811 2.89683 3.24718 3.31476 3.34975 3.66828 3.89052 4.17575 4.36474 4.41770 4.45408 4.64021 4.73781 4.74650 4.89463 4.94747 5.08774 5.12734 5.15207 5.17349 5.25525 5.31593 5.32819 5.36149 5.42217 5.44270 5.51650 5.53874 5.73595 5.78622 5.90895 5.94733 6.01359 6.13658 6.37414 6.47896 6.73629 6.82360 6.86800 7.03907 7.06031 7.18780 7.26778 7.33147 7.46373 7.63784 7.80737 8.02907 8.06788 8.47536 8.64079 8.87587 9.41310 10.89814 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.001740 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.766192 B =16088.956242 C =16376.306568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.635 5.635 6 C 0.094 3.906 7 C 0.200 3.800 8 C -0.179 4.179 9 C -0.070 4.070 10 C 0.088 3.912 11 N -0.647 5.647 12 C 0.506 3.494 13 O -0.511 6.511 14 C 0.495 3.505 15 O -0.537 6.537 16 N -0.669 5.669 17 C 0.261 3.739 18 H 0.054 0.946 19 C -0.148 4.148 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.285 1.285 28 C -0.093 4.093 29 C -0.179 4.179 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.420 0.580 45 H 0.402 0.598 46 H 0.094 0.906 47 H 0.016 0.984 48 H 0.030 0.970 49 H 0.265 0.735 50 H 0.126 0.874 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -21.368 -21.411 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.002 3.998 5 N -0.347 5.347 6 C -0.049 4.049 7 C 0.100 3.900 8 C -0.202 4.202 9 C -0.090 4.090 10 C -0.007 4.007 11 N -0.294 5.294 12 C 0.289 3.711 13 O -0.386 6.386 14 C 0.273 3.727 15 O -0.416 6.416 16 N -0.317 5.317 17 C 0.160 3.840 18 H 0.072 0.928 19 C -0.207 4.207 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.136 4.136 23 N -0.521 5.521 24 Si 0.732 3.268 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.210 1.210 28 C -0.113 4.113 29 C -0.202 4.202 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.257 0.743 45 H 0.237 0.763 46 H 0.113 0.887 47 H 0.035 0.965 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.144 0.856 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.670 -21.284 -21.307 30.163 hybrid contribution -0.593 0.832 0.031 1.022 sum -2.263 -20.452 -21.276 29.598 Atomic orbital electron populations 1.21763 0.95676 1.01604 1.01983 1.21463 0.96161 0.96427 1.01988 1.22103 0.96063 0.96967 1.02900 1.21432 0.93474 0.82420 1.02523 1.46397 1.72225 1.13104 1.02967 1.21598 1.00311 0.97929 0.85068 1.17828 0.95015 0.91526 0.85655 1.20575 1.07742 0.93597 0.98279 1.21098 0.97227 1.00506 0.90219 1.17579 1.04793 0.92945 0.85397 1.43121 1.64019 1.08973 1.13265 1.20878 0.77325 0.82530 0.90365 1.90708 1.44438 1.64635 1.38770 1.19718 0.80845 0.84404 0.87718 1.90724 1.47569 1.65118 1.38190 1.46487 1.63176 1.06695 1.15374 1.18976 0.93954 0.92169 0.78908 0.92792 1.22093 0.96540 0.98512 1.03519 1.21196 1.26261 1.08566 1.01379 0.91751 1.24880 0.95606 0.98010 0.95131 1.69893 1.39182 1.38545 1.04431 0.86392 0.80534 0.82485 0.77395 1.20467 1.19760 1.21038 1.20691 0.98729 0.93701 0.98215 1.20411 1.08826 1.00524 0.90409 0.92745 0.92587 0.92827 0.92074 0.91868 0.91369 0.91909 0.91092 0.90657 0.93537 0.91840 0.91274 0.85766 0.84259 0.74273 0.76346 0.88745 0.96461 0.95114 0.92472 0.85586 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.77 16 3 C -0.14 -0.87 5.54 -26.73 -0.15 -1.02 16 4 C 0.12 0.78 5.16 -4.04 -0.02 0.76 16 5 N -0.63 -5.20 3.01 -179.56 -0.54 -5.74 16 6 C 0.09 0.60 10.19 59.85 0.61 1.21 16 7 C 0.20 2.11 6.56 -83.70 -0.55 1.56 16 8 C -0.18 -2.07 9.20 -39.41 -0.36 -2.43 16 9 C -0.07 -0.96 8.69 -39.40 -0.34 -1.30 16 10 C 0.09 1.19 6.30 -83.67 -0.53 0.66 16 11 N -0.65 -9.41 5.32 -10.26 -0.05 -9.47 16 12 C 0.51 8.89 7.73 -11.64 -0.09 8.80 16 13 O -0.51 -9.55 13.91 5.46 0.08 -9.47 16 14 C 0.49 10.10 7.85 -11.64 -0.09 10.01 16 15 O -0.54 -12.03 16.14 5.48 0.09 -11.94 16 16 N -0.67 -14.54 5.06 -55.41 -0.28 -14.82 16 17 C 0.26 6.61 2.56 -69.09 -0.18 6.44 16 18 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 19 C -0.15 -3.63 9.26 37.15 0.34 -3.29 16 20 C -0.54 -14.23 8.73 -34.44 -0.30 -14.53 16 21 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 22 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 23 N -0.88 -24.52 11.32 55.43 0.63 -23.90 16 24 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C -0.09 -1.04 9.96 -39.40 -0.39 -1.43 16 29 C -0.18 -1.83 9.20 -39.41 -0.36 -2.19 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.35 8.07 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 6.19 -51.93 -0.32 0.14 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 41 H 0.07 0.46 6.20 -51.93 -0.32 0.13 16 42 H 0.12 1.22 6.14 -52.49 -0.32 0.90 16 43 H 0.14 2.08 6.22 -52.49 -0.33 1.75 16 44 H 0.42 5.46 8.30 -40.82 -0.34 5.12 16 45 H 0.40 8.17 8.01 -40.82 -0.33 7.84 16 46 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 51 H 0.12 1.02 6.13 -52.49 -0.32 0.70 16 LS Contribution 416.20 15.07 6.27 6.27 Total: -1.00 -30.37 416.20 -9.15 -39.52 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.02 Total: 10.16 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.29 Total: 3.73 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.25 Total: -53.92 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.16 Total: -21.41 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.37 -9.15 -39.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123079778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.609 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds