Wall clock time and date at job start Wed Apr 1 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 C 1.52995 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.46845 * 111.00231 * 290.48204 * 5 4 3 7 7 C 1.53039 * 109.52387 * 174.16212 * 6 5 4 8 8 C 1.53112 * 109.28259 * 59.17659 * 7 6 5 9 9 C 1.53120 * 109.15839 * 302.34920 * 8 7 6 10 10 C 1.46847 * 111.00006 * 166.27086 * 5 4 3 11 11 H 1.08995 * 109.45584 * 65.83043 * 10 5 4 12 12 C 1.53009 * 109.46045 * 305.85733 * 10 5 4 13 13 N 1.46503 * 109.47113 * 305.93903 * 12 10 5 14 14 S 1.65595 * 119.99908 * 164.61732 * 13 12 10 15 15 O 1.42103 * 106.40002 * 311.46371 * 14 13 12 16 16 O 1.42100 * 106.40162 * 178.54732 * 14 13 12 17 17 N 1.65593 * 107.21691 * 65.00340 * 14 13 12 18 18 C 1.46503 * 120.00130 * 269.99679 * 17 14 13 19 19 C 1.46497 * 120.00232 * 90.00358 * 17 14 13 20 20 C 1.50694 * 109.47624 * 94.99491 * 19 17 14 21 21 H 1.07999 * 119.99917 * 0.02562 * 20 19 17 22 22 C 1.37875 * 120.00486 * 180.02562 * 20 19 17 23 23 N 1.31515 * 119.99690 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00480 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46890 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47592 * 240.00290 * 24 22 20 27 27 H 1.48505 * 109.47245 * 119.99633 * 24 22 20 28 28 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46713 * 300.00312 * 1 2 3 30 30 H 1.08996 * 109.47045 * 59.99964 * 1 2 3 31 31 H 1.09009 * 109.46685 * 240.00167 * 2 1 3 32 32 H 1.08996 * 109.47045 * 120.00036 * 2 1 3 33 33 H 1.08996 * 109.47193 * 60.00086 * 3 2 1 34 34 H 1.09009 * 109.47124 * 300.00245 * 3 2 1 35 35 H 1.09001 * 109.47215 * 60.00395 * 4 3 2 36 36 H 1.09000 * 109.47453 * 299.99986 * 4 3 2 37 37 H 1.08996 * 109.46192 * 54.13720 * 6 5 4 38 38 H 1.09009 * 109.45162 * 294.16774 * 6 5 4 39 39 H 1.08997 * 109.49728 * 299.23523 * 7 6 5 40 40 H 1.08999 * 109.49995 * 179.11843 * 7 6 5 41 41 H 1.09000 * 109.52647 * 182.44130 * 8 7 6 42 42 H 1.09003 * 109.57222 * 62.27967 * 8 7 6 43 43 H 1.09001 * 109.50707 * 297.70566 * 9 8 7 44 44 H 1.09003 * 109.50097 * 177.59181 * 9 8 7 45 45 H 1.09000 * 109.46936 * 185.94625 * 12 10 5 46 46 H 1.08990 * 109.47094 * 65.94395 * 12 10 5 47 47 H 0.97005 * 119.99659 * 344.62378 * 13 12 10 48 48 H 1.09003 * 109.47555 * 270.00503 * 18 17 14 49 49 H 1.09003 * 109.47023 * 29.99986 * 18 17 14 50 50 H 1.08997 * 109.47167 * 149.99755 * 18 17 14 51 51 H 1.09008 * 109.46893 * 334.99573 * 19 17 14 52 52 H 1.09001 * 109.47212 * 214.99961 * 19 17 14 53 53 H 0.96998 * 120.00322 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8274 -0.0013 6 6 3.7824 3.4831 -1.2856 7 6 4.1727 4.9605 -1.2004 8 6 5.6615 5.0713 -0.8605 9 6 5.9321 4.3390 0.4568 10 6 5.4909 2.8797 0.3235 11 1 6.0613 2.3990 -0.4712 12 6 5.7410 2.1488 1.6443 13 7 4.8679 2.7031 2.6820 14 16 4.6372 1.8765 4.0982 15 8 4.3311 0.5370 3.7358 16 8 3.7802 2.6806 4.8971 17 7 6.0959 1.8277 4.8804 18 6 7.0208 0.7179 4.6370 19 6 6.4616 2.8941 5.8160 20 6 6.1022 2.4769 7.2187 21 1 5.6474 1.5135 7.3958 22 6 6.3541 3.3250 8.2761 23 7 6.9076 4.4984 8.0605 24 14 5.9093 2.8076 10.0150 25 1 5.3042 1.4517 9.9885 26 1 4.9362 3.7734 10.5853 27 1 7.1347 2.7858 10.8538 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8891 37 1 2.7197 3.4007 -1.5134 38 1 4.3612 2.9994 -2.0726 39 1 3.5846 5.4478 -0.4228 40 1 3.9813 5.4432 -2.1587 41 1 5.9341 6.1215 -0.7561 42 1 6.2525 4.6189 -1.6568 43 1 5.3718 4.8167 1.2605 44 1 6.9978 4.3778 0.6824 45 1 6.7824 2.2773 1.9391 46 1 5.5273 1.0875 1.5183 47 1 4.4249 3.5542 2.5394 48 1 6.8198 -0.0850 5.3463 49 1 6.8845 0.3475 3.6209 50 1 8.0463 1.0654 4.7625 51 1 5.9209 3.8048 5.5580 52 1 7.5341 3.0787 5.7553 53 1 7.1389 4.7670 7.1576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161241835.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:36 Heat of formation + Delta-G solvation = -119.154971 kcal Electronic energy + Delta-G solvation = -31063.233218 eV Core-core repulsion = 27094.663442 eV Total energy + Delta-G solvation = -3968.569776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62680 -38.31796 -37.43429 -36.88560 -36.60389 -36.03389 -34.69011 -33.84087 -31.71275 -29.50868 -29.34700 -27.07264 -26.58649 -25.41008 -24.45049 -23.37989 -22.25975 -21.69262 -20.82804 -20.20405 -19.35140 -18.50510 -18.33484 -17.51905 -16.82548 -16.71442 -16.18719 -16.05282 -15.67651 -15.63616 -15.26983 -15.02548 -15.00149 -14.85950 -14.40218 -14.26626 -14.05851 -14.00782 -13.76500 -13.62707 -13.37593 -13.23687 -13.20027 -13.18734 -13.05871 -12.91430 -12.72519 -12.42281 -12.30395 -12.21160 -12.12809 -12.02932 -11.96031 -11.84259 -11.60671 -11.50835 -11.28945 -11.07412 -11.05414 -10.57092 -10.42470 -9.78882 -9.21053 -8.66582 -6.39940 -0.35807 1.51111 1.60491 1.77390 2.02447 2.53110 2.60324 2.89089 3.12870 3.40913 3.63782 3.78442 3.90857 3.93776 4.02143 4.08501 4.20423 4.24501 4.31857 4.34190 4.41576 4.50157 4.55432 4.58911 4.62641 4.68980 4.70438 4.74890 4.80822 4.82926 4.85342 4.90997 4.94305 4.98568 4.99772 5.05112 5.10452 5.15615 5.24470 5.26737 5.30159 5.33711 5.39161 5.44953 5.51939 5.66569 5.86361 6.10322 6.19091 6.22309 6.25833 6.54105 7.35807 8.71407 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003340 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.488460 B = 8381.392957 C = 9630.191385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C 0.047 3.953 5 N -0.543 5.543 6 C 0.057 3.943 7 C -0.116 4.116 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.087 3.913 11 H 0.070 0.930 12 C 0.116 3.884 13 N -1.103 6.103 14 S 2.799 3.201 15 O -1.006 7.006 16 O -1.017 7.017 17 N -1.001 6.001 18 C 0.099 3.901 19 C 0.260 3.740 20 C -0.625 4.625 21 H 0.041 0.959 22 C -0.028 4.028 23 N -0.930 5.930 24 Si 1.114 2.886 25 H -0.279 1.279 26 H -0.279 1.279 27 H -0.268 1.268 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.422 0.578 48 H 0.040 0.960 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.010 0.990 52 H 0.026 0.974 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -3.990 -24.792 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.080 4.080 5 N -0.268 5.268 6 C -0.071 4.071 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.022 4.022 11 H 0.087 0.913 12 C -0.011 4.011 13 N -0.868 5.868 14 S 2.807 3.193 15 O -0.989 6.989 16 O -1.001 7.001 17 N -0.842 5.842 18 C -0.047 4.047 19 C 0.136 3.864 20 C -0.664 4.664 21 H 0.059 0.941 22 C -0.227 4.227 23 N -0.567 5.567 24 Si 0.935 3.065 25 H -0.204 1.204 26 H -0.205 1.205 27 H -0.193 1.193 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.258 0.742 48 H 0.059 0.941 49 H 0.104 0.896 50 H 0.099 0.901 51 H 0.028 0.972 52 H 0.044 0.956 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.630 -3.825 -22.544 23.152 hybrid contribution 0.466 -0.303 -1.973 2.050 sum -3.164 -4.128 -24.516 25.062 Atomic orbital electron populations 1.21756 0.95201 1.02014 1.01836 1.21511 0.96551 0.96473 1.01893 1.21555 0.94479 0.96814 1.02027 1.22234 0.95903 0.88872 1.00995 1.61807 1.15624 1.16779 1.32632 1.22159 1.01336 0.94750 0.88827 1.21591 0.96314 0.95429 1.02063 1.21548 0.96420 1.00662 0.96748 1.21662 1.01353 0.93730 0.98592 1.21769 0.88748 0.96840 0.94873 0.91275 1.21635 0.93987 0.97891 0.87540 1.55512 1.62188 1.37282 1.31773 1.01180 0.72692 0.72836 0.72629 1.93504 1.83393 1.37678 1.84370 1.93561 1.66114 1.71318 1.69117 1.57431 1.37475 1.33160 1.56164 1.21480 0.94277 0.87941 1.00958 1.18724 0.95447 0.84777 0.87461 1.22718 1.44420 1.04928 0.94373 0.94103 1.27167 0.93637 0.93305 1.08546 1.70865 1.40764 1.20921 1.24185 0.82982 0.77171 0.75555 0.70748 1.20428 1.20514 1.19339 0.92142 0.93663 0.91737 0.90895 0.93423 0.93360 0.90811 0.93729 0.91501 0.90302 0.94279 0.92336 0.90186 0.91359 0.91296 0.92350 0.90481 0.89947 0.90582 0.74189 0.94089 0.89556 0.90123 0.97230 0.95563 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.87 16 2 C -0.13 -2.40 5.93 30.60 0.18 -2.22 16 3 C -0.11 -2.22 5.22 30.59 0.16 -2.06 16 4 C 0.05 0.96 4.74 86.30 0.41 1.36 16 5 N -0.54 -10.36 4.09 -871.09 -3.56 -13.92 16 6 C 0.06 0.85 5.30 86.33 0.46 1.31 16 7 C -0.12 -1.64 6.09 30.65 0.19 -1.46 16 8 C -0.12 -1.62 6.00 30.67 0.18 -1.43 16 9 C -0.12 -1.99 5.26 30.65 0.16 -1.83 16 10 C 0.09 1.56 2.12 44.94 0.10 1.66 16 11 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 12 C 0.12 2.55 5.14 86.38 0.44 2.99 16 13 N -1.10 -32.28 5.66 -187.48 -1.06 -33.34 16 14 S 2.80 112.82 6.05 -56.49 -0.34 112.48 16 15 O -1.01 -41.52 16.68 -128.00 -2.13 -43.65 16 16 O -1.02 -51.54 17.11 -128.00 -2.19 -53.73 16 17 N -1.00 -41.75 3.23 -543.22 -1.75 -43.50 16 18 C 0.10 3.29 10.33 127.77 1.32 4.61 16 19 C 0.26 13.25 4.43 85.63 0.38 13.63 16 20 C -0.63 -36.56 9.38 25.60 0.24 -36.32 16 21 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 22 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 23 N -0.93 -56.64 13.65 21.45 0.29 -56.34 16 24 Si 1.11 52.18 29.90 68.60 2.05 54.24 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.24 6.56 -2.38 -0.02 1.22 16 35 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 36 H 0.07 1.64 5.61 -2.39 -0.01 1.62 16 37 H 0.08 1.15 6.38 -2.39 -0.02 1.13 16 38 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 1.22 6.94 -2.39 -0.02 1.20 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.69 5.99 -2.39 -0.01 1.67 16 47 H 0.42 12.02 7.37 -96.74 -0.71 11.31 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.09 2.24 7.79 -2.39 -0.02 2.22 16 50 H 0.08 2.42 7.94 -2.39 -0.02 2.40 16 51 H 0.01 0.53 7.48 -2.38 -0.02 0.51 16 52 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 53 H 0.26 15.65 7.22 -92.71 -0.67 14.98 16 Total: -1.00 -74.33 418.15 -3.04 -77.37 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.26 Total: 23.18 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.39 Total: -22.78 kcal Atomic # 7 Polarization: -141.03 SS G_CDS: -6.08 Total: -147.11 kcal Atomic # 8 Polarization: -93.06 SS G_CDS: -4.32 Total: -97.39 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.05 Total: 54.24 kcal Atomic # 16 Polarization: 112.82 SS G_CDS: -0.34 Total: 112.48 kcal Total: -74.33 -3.04 -77.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161241835.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.780 kcal (2) G-P(sol) polarization free energy of solvation -74.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds