Wall clock time and date at job start Wed Apr 1 2020 04:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47390 * 2 1 4 4 C 1.53002 * 109.46738 * 120.00296 * 2 1 3 5 5 C 1.53007 * 109.46892 * 184.99965 * 4 2 1 6 6 N 1.46900 * 109.47536 * 64.99820 * 4 2 1 7 7 C 1.46898 * 110.99896 * 179.97438 * 6 4 2 8 8 C 1.50693 * 109.47175 * 180.02562 * 7 6 4 9 9 O 1.21287 * 119.99875 * 5.22039 * 8 7 6 10 10 N 1.34775 * 120.00323 * 185.21729 * 8 7 6 11 11 C 1.46504 * 120.00238 * 185.23229 * 10 8 7 12 12 C 1.50703 * 109.46688 * 90.00368 * 11 10 8 13 13 H 1.08000 * 119.99838 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99649 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00264 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47142 * 60.00297 * 16 14 12 18 18 H 1.48503 * 109.47113 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47319 * 300.00212 * 16 14 12 20 20 C 1.39930 * 119.99742 * 5.24139 * 10 8 7 21 21 C 1.38876 * 120.06487 * 292.52562 * 20 10 8 22 22 C 1.38109 * 119.92555 * 179.79215 * 21 20 10 23 23 C 1.38286 * 120.07252 * 0.49210 * 22 21 20 24 24 C 1.38285 * 120.14069 * 359.74073 * 23 22 21 25 25 C 1.38118 * 120.06882 * 0.02562 * 24 23 22 26 26 C 1.50701 * 109.46761 * 304.99305 * 4 2 1 27 27 N 1.34780 * 119.99673 * 85.00948 * 26 4 2 28 28 O 1.21287 * 120.00229 * 265.00018 * 26 4 2 29 29 H 1.09001 * 109.47021 * 300.00101 * 1 2 3 30 30 H 1.09006 * 109.47134 * 60.00076 * 1 2 3 31 31 H 1.09007 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47021 * 239.99899 * 2 1 3 33 33 H 1.08997 * 109.47484 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.46919 * 300.00055 * 3 2 1 35 35 H 1.09001 * 109.47121 * 59.99960 * 3 2 1 36 36 H 1.08992 * 109.47209 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.46859 * 299.99882 * 5 4 2 38 38 H 1.09000 * 109.47226 * 59.99538 * 5 4 2 39 39 H 1.00896 * 110.99592 * 303.95307 * 6 4 2 40 40 H 1.09001 * 109.47370 * 300.00316 * 7 6 4 41 41 H 1.09002 * 109.46966 * 59.99782 * 7 6 4 42 42 H 1.09002 * 109.46836 * 209.99997 * 11 10 8 43 43 H 1.08995 * 109.46902 * 330.00277 * 11 10 8 44 44 H 0.97003 * 120.00712 * 179.97438 * 15 14 12 45 45 H 1.07995 * 120.03436 * 0.02977 * 21 20 10 46 46 H 1.08001 * 119.96758 * 180.23438 * 22 21 20 47 47 H 1.08002 * 119.93120 * 179.72118 * 23 22 21 48 48 H 1.07996 * 119.96777 * 180.02562 * 24 23 22 49 49 H 1.07994 * 120.03454 * 179.97438 * 25 24 23 50 50 H 0.96999 * 119.99942 * 359.97438 * 27 26 4 51 51 H 0.97000 * 119.99583 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 1.6513 -2.1368 1.1904 7 6 2.1256 -2.8626 2.3762 8 6 1.7096 -4.3078 2.2802 9 8 1.1635 -4.7164 1.2773 10 7 1.9444 -5.1464 3.3088 11 6 1.6453 -6.5742 3.1730 12 6 2.8578 -7.2928 2.6395 13 1 3.7609 -6.7412 2.4237 14 6 2.8144 -8.6545 2.4279 15 7 1.7148 -9.3262 2.6912 16 14 4.3170 -9.5452 1.7659 17 1 5.4533 -9.3640 2.7047 18 1 4.0139 -10.9924 1.6283 19 1 4.6782 -8.9871 0.4380 20 6 2.4738 -4.6534 4.5066 21 6 3.7724 -4.1627 4.5435 22 6 4.2905 -3.6728 5.7263 23 6 3.5212 -3.6799 6.8754 24 6 2.2293 -4.1723 6.8430 25 6 1.7037 -4.6592 5.6623 26 6 1.4391 -0.0859 2.4765 27 7 0.2220 -0.4721 2.9081 28 8 2.0507 0.7729 3.0760 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9281 -1.1268 2.2039 37 1 3.9994 -1.0729 0.4260 38 1 3.8532 0.4368 1.3574 39 1 0.6527 -2.2333 1.0824 40 1 3.2125 -2.8005 2.4295 41 1 1.6920 -2.4180 3.2719 42 1 1.3796 -6.9840 4.1474 43 1 0.8117 -6.7067 2.4834 44 1 1.6841 -10.2842 2.5420 45 1 4.3752 -4.1607 3.6474 46 1 5.2991 -3.2875 5.7549 47 1 3.9302 -3.3003 7.8001 48 1 1.6308 -4.1761 7.7420 49 1 0.6949 -5.0440 5.6377 50 1 -0.2672 -1.1588 2.4285 51 1 -0.1646 -0.0634 3.6983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297367151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:01 Heat of formation + Delta-G solvation = -37.762369 kcal Electronic energy + Delta-G solvation = -32386.985133 eV Core-core repulsion = 28286.500854 eV Total energy + Delta-G solvation = -4100.484279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97205 -39.83503 -38.16150 -36.93915 -34.93715 -34.21254 -33.57007 -32.69487 -30.76052 -29.98657 -29.41455 -28.20233 -27.01619 -25.90313 -24.02384 -22.85068 -22.46874 -22.15010 -21.66259 -19.32290 -19.12760 -17.95219 -17.26121 -16.83270 -16.48451 -16.11881 -15.95307 -15.67914 -15.14738 -14.95033 -14.65499 -14.44820 -14.27405 -14.05837 -13.87226 -13.63040 -13.20649 -13.15209 -12.86698 -12.66597 -12.49568 -12.42234 -12.34382 -12.16983 -11.94967 -11.79674 -11.48584 -11.26955 -11.22832 -11.04176 -11.02459 -10.87865 -10.78369 -10.64087 -10.26643 -10.20095 -9.82766 -9.78656 -9.36804 -8.73388 -8.71032 -8.47987 -8.41800 -7.72096 -6.09037 -4.13808 1.52874 1.60748 2.43968 3.18140 3.22814 3.30930 3.34665 3.38115 3.49977 3.97934 4.12020 4.41870 4.44278 4.52763 4.72125 4.84822 4.92446 5.13117 5.14925 5.17663 5.26292 5.29169 5.32143 5.34788 5.42498 5.50446 5.61725 5.64141 5.65059 5.73235 5.74952 5.78212 5.87698 5.98665 6.00317 6.11627 6.18809 6.22136 6.47230 6.56326 6.67465 6.69770 6.75262 6.93381 7.03766 7.15617 7.18639 7.30783 7.42691 7.86191 8.03858 8.14479 8.27677 8.78568 8.93412 9.50983 10.99258 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.003714 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.845820 B = 7537.841980 C = 8898.354489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.079 4.079 3 C -0.152 4.152 4 C 0.105 3.895 5 C -0.134 4.134 6 N -0.650 5.650 7 C 0.030 3.970 8 C 0.514 3.486 9 O -0.513 6.513 10 N -0.561 5.561 11 C 0.249 3.751 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.162 3.838 21 C -0.126 4.126 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.126 4.126 26 C 0.498 3.502 27 N -0.858 5.858 28 O -0.538 6.538 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.348 0.652 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.049 0.951 44 H 0.265 0.735 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.399 0.601 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 19.313 2.430 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.098 4.098 3 C -0.209 4.209 4 C 0.010 3.990 5 C -0.192 4.192 6 N -0.285 5.285 7 C -0.102 4.102 8 C 0.301 3.699 9 O -0.387 6.387 10 N -0.290 5.290 11 C 0.131 3.869 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.070 3.930 21 C -0.146 4.146 22 C -0.127 4.127 23 C -0.152 4.152 24 C -0.128 4.128 25 C -0.146 4.146 26 C 0.281 3.719 27 N -0.423 5.423 28 O -0.413 6.413 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.228 0.772 51 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.760 19.200 1.701 19.290 hybrid contribution -0.195 -0.703 0.631 0.965 sum -0.955 18.497 2.332 18.668 Atomic orbital electron populations 1.22110 0.95143 1.02358 1.02589 1.21099 0.95866 0.96163 0.96685 1.21957 1.01897 0.95058 1.02027 1.21408 0.97817 0.87553 0.92184 1.21837 0.91175 1.03112 1.03041 1.60254 1.20569 1.07881 1.39827 1.22130 1.03143 0.92922 0.91981 1.20136 0.79739 0.86923 0.83127 1.90695 1.41319 1.77584 1.29130 1.45959 1.61835 1.10858 1.10324 1.19433 0.97720 0.71631 0.98085 1.21323 0.98501 0.92736 1.44092 0.92420 1.24894 0.96379 0.97268 0.95299 1.69910 1.26672 1.08385 1.48319 0.86547 0.82768 0.78448 0.79645 1.20196 1.21116 1.20061 1.17749 0.91948 0.96123 0.87204 1.21383 0.94180 1.00282 0.98775 1.20987 0.99626 0.99596 0.92479 1.21068 0.94718 1.01310 0.98116 1.20965 0.95716 0.98814 0.97282 1.21281 1.00116 1.00672 0.92489 1.21781 0.81041 0.82338 0.86713 1.44148 1.20392 1.44460 1.33324 1.90714 1.60817 1.31875 1.57890 0.92369 0.91723 0.91856 0.88561 0.91684 0.92288 0.92398 0.92170 0.90589 0.90598 0.83045 0.87523 0.92522 0.94753 0.93291 0.92581 0.85899 0.86087 0.86366 0.86116 0.85848 0.77200 0.76897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.01 37.16 0.30 -1.07 16 2 C -0.08 -0.75 2.49 -90.62 -0.23 -0.98 16 3 C -0.15 -1.36 8.50 37.15 0.32 -1.04 16 4 C 0.11 1.18 0.47 -132.75 -0.06 1.12 16 5 C -0.13 -1.54 7.28 37.16 0.27 -1.27 16 6 N -0.65 -8.51 5.52 -102.39 -0.57 -9.07 16 7 C 0.03 0.45 3.93 -4.98 -0.02 0.43 16 8 C 0.51 10.19 7.60 -10.99 -0.08 10.11 16 9 O -0.51 -11.99 15.83 5.55 0.09 -11.91 16 10 N -0.56 -11.67 2.51 -114.73 -0.29 -11.95 16 11 C 0.25 6.38 5.15 -5.19 -0.03 6.35 16 12 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -26.22 13.28 55.43 0.74 -25.49 16 16 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.16 2.88 4.44 -83.69 -0.37 2.51 16 21 C -0.13 -2.03 8.45 -39.39 -0.33 -2.36 16 22 C -0.11 -1.46 10.04 -39.61 -0.40 -1.85 16 23 C -0.13 -1.68 10.04 -39.55 -0.40 -2.07 16 24 C -0.11 -1.44 10.04 -39.61 -0.40 -1.83 16 25 C -0.13 -1.98 9.66 -39.39 -0.38 -2.36 16 26 C 0.50 5.90 4.08 -10.98 -0.04 5.86 16 27 N -0.86 -7.80 6.73 31.22 0.21 -7.59 16 28 O -0.54 -8.07 16.36 5.55 0.09 -7.98 16 29 H 0.06 0.47 6.26 -51.93 -0.32 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.57 6.34 -51.93 -0.33 0.24 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.60 6.97 -51.93 -0.36 0.24 16 36 H 0.06 0.73 6.40 -51.93 -0.33 0.40 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.83 6.07 -51.93 -0.32 0.52 16 39 H 0.35 4.31 5.35 -39.29 -0.21 4.10 16 40 H 0.11 1.59 5.05 -51.93 -0.26 1.32 16 41 H 0.06 0.80 6.30 -51.93 -0.33 0.47 16 42 H 0.03 0.90 7.84 -51.93 -0.41 0.50 16 43 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 1.96 7.54 -52.49 -0.40 1.57 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 49 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 50 H 0.40 3.19 6.75 -40.82 -0.28 2.92 16 51 H 0.40 3.15 8.93 -40.82 -0.36 2.78 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -33.76 400.87 -8.55 -42.30 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.56 Total: 10.74 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.28 Total: -1.87 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.09 Total: -54.10 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.76 -8.55 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297367151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.542 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds