Wall clock time and date at job start Wed Apr 1 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47390 * 2 1 4 4 C 1.53002 * 109.46738 * 120.00296 * 2 1 3 5 5 C 1.53007 * 109.46892 * 184.99965 * 4 2 1 6 6 N 1.46900 * 109.47536 * 64.99820 * 4 2 1 7 7 C 1.46898 * 110.99896 * 179.97438 * 6 4 2 8 8 C 1.50693 * 109.47175 * 180.02562 * 7 6 4 9 9 O 1.21287 * 119.99875 * 5.22039 * 8 7 6 10 10 N 1.34775 * 120.00323 * 185.21729 * 8 7 6 11 11 C 1.46504 * 120.00238 * 185.23229 * 10 8 7 12 12 C 1.50703 * 109.46688 * 90.00368 * 11 10 8 13 13 H 1.08000 * 119.99838 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99649 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00264 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47142 * 60.00297 * 16 14 12 18 18 H 1.48503 * 109.47113 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47319 * 300.00212 * 16 14 12 20 20 C 1.39930 * 119.99742 * 5.24139 * 10 8 7 21 21 C 1.38876 * 120.06487 * 292.52562 * 20 10 8 22 22 C 1.38109 * 119.92555 * 179.79215 * 21 20 10 23 23 C 1.38286 * 120.07252 * 0.49210 * 22 21 20 24 24 C 1.38285 * 120.14069 * 359.74073 * 23 22 21 25 25 C 1.38118 * 120.06882 * 0.02562 * 24 23 22 26 26 C 1.50701 * 109.46761 * 304.99305 * 4 2 1 27 27 N 1.34780 * 119.99673 * 85.00948 * 26 4 2 28 28 O 1.21287 * 120.00229 * 265.00018 * 26 4 2 29 29 H 1.09001 * 109.47021 * 300.00101 * 1 2 3 30 30 H 1.09006 * 109.47134 * 60.00076 * 1 2 3 31 31 H 1.09007 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47021 * 239.99899 * 2 1 3 33 33 H 1.08997 * 109.47484 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.46919 * 300.00055 * 3 2 1 35 35 H 1.09001 * 109.47121 * 59.99960 * 3 2 1 36 36 H 1.08992 * 109.47209 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.46859 * 299.99882 * 5 4 2 38 38 H 1.09000 * 109.47226 * 59.99538 * 5 4 2 39 39 H 1.00896 * 110.99592 * 303.95307 * 6 4 2 40 40 H 1.09001 * 109.47370 * 300.00316 * 7 6 4 41 41 H 1.09002 * 109.46966 * 59.99782 * 7 6 4 42 42 H 1.09002 * 109.46836 * 209.99997 * 11 10 8 43 43 H 1.08995 * 109.46902 * 330.00277 * 11 10 8 44 44 H 0.97003 * 120.00712 * 179.97438 * 15 14 12 45 45 H 1.07995 * 120.03436 * 0.02977 * 21 20 10 46 46 H 1.08001 * 119.96758 * 180.23438 * 22 21 20 47 47 H 1.08002 * 119.93120 * 179.72118 * 23 22 21 48 48 H 1.07996 * 119.96777 * 180.02562 * 24 23 22 49 49 H 1.07994 * 120.03454 * 179.97438 * 25 24 23 50 50 H 0.96999 * 119.99942 * 359.97438 * 27 26 4 51 51 H 0.97000 * 119.99583 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 1.6513 -2.1368 1.1904 7 6 2.1256 -2.8626 2.3762 8 6 1.7096 -4.3078 2.2802 9 8 1.1635 -4.7164 1.2773 10 7 1.9444 -5.1464 3.3088 11 6 1.6453 -6.5742 3.1730 12 6 2.8578 -7.2928 2.6395 13 1 3.7609 -6.7412 2.4237 14 6 2.8144 -8.6545 2.4279 15 7 1.7148 -9.3262 2.6912 16 14 4.3170 -9.5452 1.7659 17 1 5.4533 -9.3640 2.7047 18 1 4.0139 -10.9924 1.6283 19 1 4.6782 -8.9871 0.4380 20 6 2.4738 -4.6534 4.5066 21 6 3.7724 -4.1627 4.5435 22 6 4.2905 -3.6728 5.7263 23 6 3.5212 -3.6799 6.8754 24 6 2.2293 -4.1723 6.8430 25 6 1.7037 -4.6592 5.6623 26 6 1.4391 -0.0859 2.4765 27 7 0.2220 -0.4721 2.9081 28 8 2.0507 0.7729 3.0760 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9281 -1.1268 2.2039 37 1 3.9994 -1.0729 0.4260 38 1 3.8532 0.4368 1.3574 39 1 0.6527 -2.2333 1.0824 40 1 3.2125 -2.8005 2.4295 41 1 1.6920 -2.4180 3.2719 42 1 1.3796 -6.9840 4.1474 43 1 0.8117 -6.7067 2.4834 44 1 1.6841 -10.2842 2.5420 45 1 4.3752 -4.1607 3.6474 46 1 5.2991 -3.2875 5.7549 47 1 3.9302 -3.3003 7.8001 48 1 1.6308 -4.1761 7.7420 49 1 0.6949 -5.0440 5.6377 50 1 -0.2672 -1.1588 2.4285 51 1 -0.1646 -0.0634 3.6983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297367151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:00 Heat of formation + Delta-G solvation = -61.275017 kcal Electronic energy + Delta-G solvation = -32388.004718 eV Core-core repulsion = 28286.500854 eV Total energy + Delta-G solvation = -4101.503864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.01680 -41.18464 -39.49423 -37.95176 -36.52824 -35.20374 -34.77945 -34.46351 -31.90266 -31.11862 -30.73885 -29.56639 -28.27316 -27.06762 -25.26811 -24.44390 -23.65827 -23.35436 -22.65040 -20.53578 -20.21000 -19.10168 -18.72109 -18.22704 -17.86285 -17.46252 -17.15282 -16.81865 -16.69816 -16.26094 -15.79753 -15.69501 -15.41857 -15.31236 -15.08031 -14.53947 -14.48372 -14.38384 -14.31372 -13.88659 -13.66438 -13.53607 -13.40966 -13.32946 -13.13913 -13.08052 -12.95885 -12.70139 -12.63718 -12.42824 -12.17073 -12.11601 -12.07348 -11.83542 -11.75437 -11.59346 -11.23338 -10.94424 -10.69668 -10.66594 -10.12616 -9.85629 -9.58670 -9.24830 -8.24974 -6.39558 0.34098 0.47689 1.35437 1.39338 1.46099 1.48959 1.63875 2.01454 2.36416 2.40827 2.82650 2.98237 3.05385 3.50822 3.60111 3.68585 3.90985 4.01986 4.08256 4.10557 4.15245 4.26407 4.31446 4.36945 4.55170 4.57327 4.63566 4.71276 4.74899 4.80067 4.83928 4.93714 4.97317 4.99583 5.10053 5.12331 5.14104 5.22887 5.33573 5.38567 5.40150 5.51382 5.58457 5.60235 5.64735 5.75655 5.81894 6.00205 6.02876 6.06226 6.27181 6.64698 6.70817 7.16478 7.21090 7.35366 8.82045 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.003714 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.845820 B = 7537.841980 C = 8898.354489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.147 4.147 4 C 0.107 3.893 5 C -0.135 4.135 6 N -0.656 5.656 7 C 0.054 3.946 8 C 0.508 3.492 9 O -0.559 6.559 10 N -0.562 5.562 11 C 0.267 3.733 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.926 5.926 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.126 3.874 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.122 4.122 24 C -0.104 4.104 25 C -0.140 4.140 26 C 0.500 3.500 27 N -0.845 5.845 28 O -0.570 6.570 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.351 0.649 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.020 0.980 43 H 0.010 0.990 44 H 0.268 0.732 45 H 0.115 0.885 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.152 0.848 49 H 0.116 0.884 50 H 0.405 0.595 51 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 20.819 3.680 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.097 4.097 3 C -0.204 4.204 4 C 0.013 3.987 5 C -0.193 4.193 6 N -0.291 5.291 7 C -0.078 4.078 8 C 0.297 3.703 9 O -0.437 6.437 10 N -0.290 5.290 11 C 0.147 3.853 12 C -0.582 4.582 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.200 1.200 20 C 0.035 3.965 21 C -0.158 4.158 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.159 4.159 26 C 0.284 3.716 27 N -0.410 5.410 28 O -0.447 6.447 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.174 0.826 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.028 0.972 44 H 0.077 0.923 45 H 0.133 0.867 46 H 0.168 0.832 47 H 0.175 0.825 48 H 0.170 0.830 49 H 0.134 0.866 50 H 0.236 0.764 51 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.659 20.732 2.987 20.956 hybrid contribution -0.674 -1.133 0.331 1.359 sum -0.015 19.599 3.319 19.878 Atomic orbital electron populations 1.22104 0.94189 1.02429 1.03329 1.21123 0.96708 0.96287 0.95548 1.21917 1.01944 0.94442 1.02139 1.21468 0.97842 0.86333 0.93061 1.21854 0.91302 1.03387 1.02730 1.60245 1.20961 1.08993 1.38931 1.21867 1.03178 0.89540 0.93219 1.20972 0.78579 0.88655 0.82096 1.90657 1.43397 1.78791 1.30829 1.45754 1.61986 1.09127 1.12123 1.18832 0.95741 0.74826 0.95900 1.21587 0.98874 0.93387 1.44390 0.93013 1.25783 0.99423 0.98077 0.95370 1.70025 1.28621 1.08776 1.49070 0.85512 0.79273 0.77390 0.78951 1.18856 1.20132 1.20008 1.17995 0.93323 0.98692 0.86511 1.21419 0.93418 1.01119 0.99866 1.21351 1.00982 0.98427 0.91592 1.21553 0.93995 0.99299 0.99153 1.21335 0.96446 0.97300 0.97109 1.21378 1.00008 1.01499 0.93045 1.21793 0.81423 0.81913 0.86520 1.44045 1.19582 1.44025 1.33350 1.90702 1.61814 1.33389 1.58809 0.92233 0.90423 0.92098 0.88598 0.91609 0.90624 0.93733 0.93102 0.90254 0.90032 0.82628 0.87174 0.91346 0.96237 0.97223 0.92295 0.86701 0.83166 0.82530 0.82996 0.86584 0.76442 0.75939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.01 71.98 0.58 -1.92 16 2 C -0.08 -1.39 2.49 -10.80 -0.03 -1.42 16 3 C -0.15 -2.43 8.50 71.98 0.61 -1.81 16 4 C 0.11 2.34 0.47 2.78 0.00 2.34 16 5 C -0.14 -3.01 7.28 71.98 0.52 -2.49 16 6 N -0.66 -17.17 5.52 -477.87 -2.64 -19.81 16 7 C 0.05 1.63 3.93 85.56 0.34 1.97 16 8 C 0.51 21.07 7.60 87.66 0.67 21.74 16 9 O -0.56 -27.61 15.83 -3.05 -0.05 -27.66 16 10 N -0.56 -24.54 2.51 -635.29 -1.59 -26.13 16 11 C 0.27 14.51 5.15 85.63 0.44 14.95 16 12 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.93 -55.78 13.28 21.45 0.28 -55.49 16 16 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 20 C 0.13 4.53 4.44 38.15 0.17 4.70 16 21 C -0.14 -4.36 8.45 22.39 0.19 -4.17 16 22 C -0.11 -2.53 10.04 22.25 0.22 -2.31 16 23 C -0.12 -2.58 10.04 22.29 0.22 -2.35 16 24 C -0.10 -2.44 10.04 22.25 0.22 -2.22 16 25 C -0.14 -4.37 9.66 22.39 0.22 -4.15 16 26 C 0.50 11.40 4.08 87.66 0.36 11.76 16 27 N -0.85 -14.52 6.73 -173.52 -1.17 -15.69 16 28 O -0.57 -16.55 16.36 -3.05 -0.05 -16.60 16 29 H 0.06 0.89 6.26 -2.39 -0.01 0.87 16 30 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 0.96 6.68 -2.38 -0.02 0.95 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.07 6.34 -2.39 -0.02 1.05 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.04 0.87 6.97 -2.39 -0.02 0.85 16 36 H 0.05 1.21 6.40 -2.39 -0.02 1.20 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.72 6.07 -2.39 -0.01 1.71 16 39 H 0.35 8.76 5.35 -89.70 -0.48 8.28 16 40 H 0.11 3.30 5.05 -2.39 -0.01 3.29 16 41 H 0.07 1.91 6.30 -2.39 -0.02 1.89 16 42 H 0.02 1.10 7.84 -2.39 -0.02 1.08 16 43 H 0.01 0.59 7.36 -2.39 -0.02 0.58 16 44 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.11 3.70 7.54 -2.91 -0.02 3.68 16 46 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 48 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 49 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 50 H 0.41 6.18 6.75 -92.71 -0.63 5.55 16 51 H 0.41 5.91 8.93 -92.71 -0.83 5.08 16 Total: -1.00 -75.99 400.87 1.29 -74.70 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.96 Total: 35.11 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.43 Total: 4.47 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -5.11 Total: -117.13 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.10 Total: -44.26 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.99 1.29 -74.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297367151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.428 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds