Wall clock time and date at job start Wed Apr 1 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47419 * 2 1 4 4 C 1.52998 * 109.47374 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47393 * 180.02562 * 4 3 2 6 6 C 1.46843 * 110.99921 * 170.00163 * 5 4 3 7 7 C 1.53038 * 109.52236 * 185.84336 * 6 5 4 8 8 C 1.53123 * 109.27805 * 300.82051 * 7 6 5 9 9 N 1.46500 * 109.52647 * 177.55858 * 8 7 6 10 10 S 1.65593 * 119.99925 * 144.99910 * 9 8 7 11 11 O 1.42096 * 106.40460 * 311.46213 * 10 9 8 12 12 O 1.42108 * 106.40218 * 178.54273 * 10 9 8 13 13 N 1.65606 * 107.21842 * 65.00539 * 10 9 8 14 14 C 1.46497 * 119.99739 * 269.99739 * 13 10 9 15 15 C 1.46497 * 120.00188 * 89.99816 * 13 10 9 16 16 H 1.09007 * 109.47078 * 359.97438 * 15 13 10 17 17 C 1.53000 * 109.47021 * 240.00233 * 15 13 10 18 18 C 1.50694 * 109.47115 * 120.00014 * 15 13 10 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.53125 * 109.15792 * 57.65551 * 8 7 6 27 27 C 1.46846 * 110.99945 * 294.21515 * 5 4 3 28 28 H 1.09004 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47001 * 299.99506 * 1 2 3 30 30 H 1.09005 * 109.46757 * 59.99659 * 1 2 3 31 31 H 1.09005 * 109.46777 * 239.99889 * 2 1 3 32 32 H 1.08999 * 109.47087 * 120.00540 * 2 1 3 33 33 H 1.09001 * 109.46854 * 59.99836 * 3 2 1 34 34 H 1.08999 * 109.47432 * 300.00329 * 3 2 1 35 35 H 1.09001 * 109.46964 * 60.00271 * 4 3 2 36 36 H 1.08999 * 109.47409 * 300.00710 * 4 3 2 37 37 H 1.08997 * 109.46262 * 65.82559 * 6 5 4 38 38 H 1.09006 * 109.45777 * 305.85051 * 6 5 4 39 39 H 1.08998 * 109.50809 * 180.88235 * 7 6 5 40 40 H 1.09000 * 109.50524 * 60.76264 * 7 6 5 41 41 H 1.08998 * 109.52606 * 297.69214 * 8 7 6 42 42 H 0.97000 * 119.99178 * 325.00264 * 9 8 7 43 43 H 1.09001 * 109.46905 * 270.00036 * 14 13 10 44 44 H 1.09005 * 109.47144 * 29.99977 * 14 13 10 45 45 H 1.08993 * 109.47302 * 150.00165 * 14 13 10 46 46 H 1.08995 * 109.47131 * 179.97438 * 17 15 13 47 47 H 1.09002 * 109.47106 * 299.99878 * 17 15 13 48 48 H 1.08998 * 109.47089 * 59.99825 * 17 15 13 49 49 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.50810 * 62.28756 * 26 8 7 51 51 H 1.09007 * 109.49975 * 182.40733 * 26 8 7 52 52 H 1.08999 * 109.46387 * 294.17067 * 27 5 4 53 53 H 1.09005 * 109.46418 * 54.15473 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8274 0.0013 6 6 5.5080 2.8733 0.2399 7 6 5.9575 4.3296 0.3788 8 6 5.6081 5.0909 -0.9030 9 7 5.9833 6.4992 -0.7538 10 16 6.5507 7.3475 -2.0578 11 8 7.5544 6.5392 -2.6565 12 8 6.7892 8.6722 -1.6019 13 7 5.3138 7.4461 -3.1545 14 6 5.1551 6.4070 -4.1749 15 6 4.3783 8.5723 -3.1043 16 1 4.6534 9.2370 -2.2853 17 6 2.9591 8.0468 -2.8791 18 6 4.4329 9.3292 -4.4062 19 1 5.0983 9.0042 -5.1923 20 6 3.6342 10.4374 -4.5934 21 7 2.8243 10.8336 -3.6360 22 14 3.7026 11.3760 -6.2070 23 1 4.7327 12.4418 -6.1165 24 1 4.0513 10.4428 -7.3082 25 1 2.3779 11.9898 -6.4791 26 6 4.1013 4.9867 -1.1545 27 6 3.7056 3.5113 -1.2490 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9284 -0.8892 36 1 3.9330 0.9286 0.8908 37 1 6.0290 2.4107 -0.5983 38 1 5.7423 2.3320 1.1566 39 1 7.0349 4.3642 0.5403 40 1 5.4471 4.7889 1.2254 41 1 6.1494 4.6568 -1.7436 42 1 5.8992 6.9346 0.1089 43 1 5.7224 6.6815 -5.0643 44 1 5.5244 5.4575 -3.7872 45 1 4.1006 6.3087 -4.4326 46 1 2.2631 8.8847 -2.8412 47 1 2.6837 7.3819 -3.6977 48 1 2.9196 7.4993 -1.9374 49 1 2.2627 11.6134 -3.7676 50 1 3.5616 5.4563 -0.3321 51 1 3.8525 5.4907 -2.0886 52 1 4.2351 3.0458 -2.0802 53 1 2.6309 3.4335 -1.4137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330403455.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:28 Heat of formation + Delta-G solvation = -113.121139 kcal Electronic energy + Delta-G solvation = -30836.782158 eV Core-core repulsion = 26868.474029 eV Total energy + Delta-G solvation = -3968.308129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.29031 -38.31736 -37.92137 -37.14928 -36.87916 -35.24156 -34.51643 -32.01840 -31.80398 -30.88744 -28.92200 -27.27909 -26.98131 -25.06250 -24.14016 -22.91108 -22.54221 -21.60371 -21.06423 -20.15201 -18.78543 -18.54753 -18.15270 -17.49999 -16.97835 -16.53547 -16.39878 -15.93429 -15.76905 -15.28641 -15.14221 -14.91572 -14.80856 -14.66760 -14.49958 -14.10817 -13.87398 -13.74710 -13.45797 -13.38108 -13.23586 -13.16664 -13.05565 -12.98674 -12.87297 -12.74843 -12.58455 -12.42189 -12.38714 -12.21296 -12.11154 -12.09944 -11.93662 -11.89371 -11.74767 -11.54020 -11.36066 -11.25285 -11.12181 -10.48994 -10.35515 -9.64094 -9.20849 -8.10300 -6.23335 -0.29950 1.42012 1.44378 1.52973 2.04470 2.43975 2.65490 2.96054 3.18082 3.44823 3.72155 3.85962 3.99768 4.03933 4.08292 4.14015 4.29815 4.33341 4.34422 4.45447 4.52363 4.56784 4.67614 4.68329 4.75178 4.79769 4.81360 4.90328 4.94911 5.00585 5.01693 5.03947 5.05325 5.07215 5.15400 5.17639 5.20112 5.22201 5.30387 5.34846 5.44639 5.48633 5.54182 5.63934 5.73525 5.90584 6.08903 6.18898 6.21499 6.25206 6.33414 6.84452 7.45457 8.93567 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003067 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.118526 B = 9127.253977 C =10668.437007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.114 4.114 4 C 0.057 3.943 5 N -0.547 5.547 6 C 0.060 3.940 7 C -0.114 4.114 8 C 0.148 3.852 9 N -1.112 6.112 10 S 2.794 3.206 11 O -1.011 7.011 12 O -1.019 7.019 13 N -0.994 5.994 14 C 0.105 3.895 15 C 0.277 3.723 16 H 0.023 0.977 17 C -0.132 4.132 18 C -0.537 4.537 19 H 0.055 0.945 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.953 3.047 23 H -0.284 1.284 24 H -0.267 1.267 25 H -0.279 1.279 26 C -0.137 4.137 27 C 0.060 3.940 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.421 0.579 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.264 0.736 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.037 0.963 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -22.673 8.932 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.070 4.070 5 N -0.272 5.272 6 C -0.069 4.069 7 C -0.153 4.153 8 C 0.041 3.959 9 N -0.873 5.873 10 S 2.804 3.196 11 O -0.995 6.995 12 O -1.004 7.004 13 N -0.835 5.835 14 C -0.041 4.041 15 C 0.173 3.827 16 H 0.041 0.959 17 C -0.192 4.192 18 C -0.577 4.577 19 H 0.073 0.927 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.779 3.221 23 H -0.210 1.210 24 H -0.192 1.192 25 H -0.204 1.204 26 C -0.176 4.176 27 C -0.069 4.069 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.257 0.743 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.073 0.927 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.055 0.945 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.003 -22.014 9.059 23.826 hybrid contribution -0.020 0.780 -1.152 1.391 sum -1.023 -21.235 7.907 22.682 Atomic orbital electron populations 1.21774 0.95746 1.01856 1.01723 1.21462 0.95993 0.96101 1.02240 1.21600 0.94348 0.97081 1.02181 1.22139 0.95729 0.87948 1.01186 1.61961 1.14020 1.16242 1.34980 1.22073 0.87127 0.95931 1.01737 1.21843 1.01893 0.95018 0.96595 1.20998 0.95386 0.79414 1.00106 1.55848 1.83979 1.21208 1.26313 1.01237 0.73422 0.71785 0.73170 1.93509 1.57115 1.71204 1.77626 1.93550 1.85508 1.39132 1.82169 1.57522 1.48235 1.33354 1.44419 1.21335 1.03272 0.88492 0.91007 1.18354 0.86306 0.82002 0.96088 0.95934 1.21905 0.98687 1.00282 0.98317 1.21668 1.22829 1.11897 1.01274 0.92678 1.25608 0.95014 0.97811 0.99737 1.69977 1.25637 1.25847 1.33772 0.85642 0.77302 0.78774 0.80407 1.21015 1.19156 1.20440 1.22209 0.95359 0.96859 1.03210 1.22060 1.01500 0.93068 0.90230 0.92203 0.92828 0.93110 0.91978 0.91459 0.91892 0.92471 0.94773 0.89943 0.94509 0.88775 0.90125 0.90042 0.90224 0.74333 0.94177 0.90688 0.90138 0.91811 0.93818 0.94264 0.92707 0.90847 0.90950 0.94495 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.11 -1.55 5.14 30.59 0.16 -1.40 16 4 C 0.06 0.79 4.96 86.30 0.43 1.22 16 5 N -0.55 -9.24 4.66 -896.35 -4.17 -13.41 16 6 C 0.06 0.93 5.46 86.33 0.47 1.40 16 7 C -0.11 -2.05 5.63 30.65 0.17 -1.88 16 8 C 0.15 3.43 2.88 45.07 0.13 3.56 16 9 N -1.11 -31.22 5.53 -169.04 -0.94 -32.16 16 10 S 2.79 108.05 6.07 -56.49 -0.34 107.71 16 11 O -1.01 -41.12 16.55 -128.00 -2.12 -43.24 16 12 O -1.02 -48.56 16.70 -128.00 -2.14 -50.69 16 13 N -0.99 -39.87 2.86 -520.46 -1.49 -41.36 16 14 C 0.10 3.51 8.39 127.77 1.07 4.58 16 15 C 0.28 13.40 2.62 44.24 0.12 13.51 16 16 H 0.02 1.26 6.91 -2.38 -0.02 1.24 16 17 C -0.13 -5.76 8.73 71.98 0.63 -5.13 16 18 C -0.54 -29.00 8.37 25.60 0.21 -28.78 16 19 H 0.05 2.97 7.65 -2.91 -0.02 2.95 16 20 C 0.02 0.99 5.30 84.66 0.45 1.43 16 21 N -0.91 -51.26 11.32 21.45 0.24 -51.02 16 22 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.14 -3.09 5.68 30.65 0.17 -2.92 16 27 C 0.06 1.12 5.29 86.33 0.46 1.58 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 35 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.08 0.98 7.99 -2.39 -0.02 0.96 16 37 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 1.17 8.02 -2.38 -0.02 1.15 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.94 7.06 -2.39 -0.02 1.92 16 42 H 0.42 10.43 8.84 -96.74 -0.86 9.58 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 2.05 7.34 -2.38 -0.02 2.04 16 45 H 0.08 2.56 6.43 -2.39 -0.02 2.54 16 46 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 47 H 0.04 1.76 6.66 -2.39 -0.02 1.75 16 48 H 0.04 1.46 7.50 -2.39 -0.02 1.44 16 49 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.07 1.83 5.82 -2.38 -0.01 1.82 16 52 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.08 1.53 6.21 -2.38 -0.01 1.52 16 Total: -1.00 -67.41 411.92 -3.54 -70.95 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.02 Total: 22.76 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.36 Total: -15.02 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -6.36 Total: -137.95 kcal Atomic # 8 Polarization: -89.68 SS G_CDS: -4.26 Total: -93.93 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 108.05 SS G_CDS: -0.34 Total: 107.71 kcal Total: -67.41 -3.54 -70.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330403455.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.170 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds