Wall clock time and date at job start Wed Apr 1 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 C 1.53003 * 109.47014 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47210 * 179.97438 * 4 3 2 6 6 C 1.46846 * 111.00082 * 170.00237 * 5 4 3 7 7 C 1.53033 * 109.52576 * 185.83966 * 6 5 4 8 8 C 1.53118 * 109.27708 * 300.81897 * 7 6 5 9 9 N 1.46501 * 109.52301 * 177.55850 * 8 7 6 10 10 S 1.65600 * 119.99958 * 144.99949 * 9 8 7 11 11 O 1.42100 * 106.40472 * 311.46100 * 10 9 8 12 12 O 1.42100 * 106.40369 * 178.54109 * 10 9 8 13 13 N 1.65596 * 107.21951 * 64.99870 * 10 9 8 14 14 C 1.46505 * 120.00160 * 270.00283 * 13 10 9 15 15 C 1.46503 * 120.00153 * 89.99728 * 13 10 9 16 16 H 1.08995 * 109.47275 * 0.02562 * 15 13 10 17 17 C 1.53004 * 109.47209 * 120.00128 * 15 13 10 18 18 C 1.50694 * 109.47638 * 240.00159 * 15 13 10 19 19 H 1.08004 * 120.00041 * 354.47164 * 18 15 13 20 20 C 1.37874 * 120.00445 * 174.47519 * 18 15 13 21 21 N 1.31515 * 120.00126 * 164.53677 * 20 18 15 22 22 Si 1.86798 * 119.99834 * 344.81119 * 20 18 15 23 23 H 1.48497 * 109.47337 * 269.72517 * 22 20 18 24 24 H 1.48505 * 109.47321 * 29.72598 * 22 20 18 25 25 H 1.48501 * 109.47286 * 149.72468 * 22 20 18 26 26 C 1.53124 * 109.16341 * 57.65215 * 8 7 6 27 27 C 1.46845 * 110.99864 * 294.20805 * 5 4 3 28 28 H 1.09002 * 109.46652 * 60.00108 * 1 2 3 29 29 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46948 * 300.00784 * 1 2 3 31 31 H 1.08999 * 109.47253 * 239.99931 * 2 1 3 32 32 H 1.09001 * 109.47165 * 119.99772 * 2 1 3 33 33 H 1.08996 * 109.47585 * 60.00172 * 3 2 1 34 34 H 1.09002 * 109.47323 * 299.99482 * 3 2 1 35 35 H 1.09004 * 109.47398 * 59.99453 * 4 3 2 36 36 H 1.09001 * 109.47165 * 299.99772 * 4 3 2 37 37 H 1.08997 * 109.46955 * 65.82097 * 6 5 4 38 38 H 1.09005 * 109.45452 * 305.84597 * 6 5 4 39 39 H 1.08995 * 109.50773 * 180.87551 * 7 6 5 40 40 H 1.09001 * 109.50817 * 60.75430 * 7 6 5 41 41 H 1.09002 * 109.52086 * 297.68085 * 8 7 6 42 42 H 0.96994 * 120.00000 * 324.99656 * 9 8 7 43 43 H 1.09001 * 109.46603 * 269.99670 * 14 13 10 44 44 H 1.08995 * 109.46945 * 29.99287 * 14 13 10 45 45 H 1.09000 * 109.47211 * 149.99888 * 14 13 10 46 46 H 1.08993 * 109.47452 * 173.77820 * 17 15 13 47 47 H 1.09007 * 109.46827 * 293.78034 * 17 15 13 48 48 H 1.08997 * 109.47194 * 53.77298 * 17 15 13 49 49 H 0.96998 * 119.99914 * 355.18563 * 21 20 18 50 50 H 1.09003 * 109.49983 * 62.28737 * 26 8 7 51 51 H 1.08999 * 109.50488 * 182.40801 * 26 8 7 52 52 H 1.09002 * 109.46646 * 294.17284 * 27 5 4 53 53 H 1.08997 * 109.46425 * 54.15889 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5079 2.8737 0.2386 7 6 5.9574 4.3301 0.3761 8 6 5.6081 5.0901 -0.9064 9 7 5.9832 6.4985 -0.7585 10 16 6.5508 7.3457 -2.0633 11 8 7.5545 6.5368 -2.6612 12 8 6.7892 8.6707 -1.6086 13 7 5.3140 7.4431 -3.1601 14 6 5.1553 6.4030 -4.1796 15 6 4.3783 8.5694 -3.1110 16 1 4.6539 9.2352 -2.2933 17 6 4.4339 9.3366 -4.4336 18 6 2.9805 8.0520 -2.8889 19 1 2.7930 6.9884 -2.8829 20 6 1.9410 8.9364 -2.6933 21 7 0.6971 8.5236 -2.8024 22 14 2.2995 10.7226 -2.2807 23 1 2.3783 10.8841 -0.8067 24 1 3.5926 11.1220 -2.8922 25 1 1.2128 11.5819 -2.8154 26 6 4.1012 4.9857 -1.1580 27 6 3.7056 3.5102 -1.2509 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9338 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 6.0291 2.4104 -0.5991 38 1 5.7422 2.3333 1.1558 39 1 7.0347 4.3648 0.5377 40 1 5.4470 4.7902 1.2222 41 1 6.1496 4.6552 -1.7465 42 1 5.8992 6.9348 0.1037 43 1 5.7226 6.6767 -5.0692 44 1 5.5247 5.4540 -3.7910 45 1 4.1008 6.3045 -4.4372 46 1 3.6615 10.1056 -4.4403 47 1 5.4128 9.8039 -4.5417 48 1 4.2672 8.6470 -5.2610 49 1 0.5107 7.6157 -3.0885 50 1 3.5616 5.4561 -0.3360 51 1 3.8526 5.4887 -2.0925 52 1 4.2352 3.0439 -2.0817 53 1 2.6310 3.4323 -1.4156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330403456.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:31 Heat of formation + Delta-G solvation = -112.347840 kcal Electronic energy + Delta-G solvation = -31216.382547 eV Core-core repulsion = 27248.107951 eV Total energy + Delta-G solvation = -3968.274597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.33593 -38.39643 -38.07024 -37.19704 -36.95312 -35.28594 -34.54988 -32.05990 -31.91012 -31.53298 -28.97708 -27.24832 -26.58000 -25.11929 -24.16775 -22.95656 -22.45635 -21.65664 -21.08620 -20.25070 -19.47850 -18.72013 -18.45314 -17.61203 -16.89195 -16.58788 -16.23786 -15.83615 -15.72905 -15.48994 -15.18751 -15.06175 -14.84687 -14.69640 -14.62110 -14.13048 -13.94607 -13.87140 -13.61224 -13.51597 -13.45933 -13.27102 -13.23910 -13.13052 -13.02133 -12.89176 -12.48961 -12.47146 -12.42732 -12.20351 -12.15945 -11.98178 -11.89305 -11.83218 -11.59179 -11.43459 -11.40486 -11.31090 -11.02418 -10.46542 -10.37898 -9.77822 -9.25321 -8.58191 -6.24284 -0.33796 1.53209 1.54263 1.71488 1.92685 2.52344 2.56970 2.91272 3.15435 3.36800 3.67972 3.81066 3.92406 3.98644 4.00918 4.08155 4.24947 4.27574 4.29402 4.38448 4.47173 4.51317 4.52530 4.61569 4.64794 4.68953 4.74103 4.76471 4.81666 4.88167 4.90530 4.93499 4.96540 4.98274 5.00998 5.08777 5.10097 5.17552 5.26887 5.29473 5.32265 5.39545 5.46280 5.49442 5.56389 5.75541 6.02752 6.10499 6.14318 6.20412 6.21141 6.76560 7.48675 8.76584 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.003912 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.780252 B = 7156.513642 C = 9007.380946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.117 4.117 4 C 0.059 3.941 5 N -0.550 5.550 6 C 0.060 3.940 7 C -0.114 4.114 8 C 0.154 3.846 9 N -1.113 6.113 10 S 2.796 3.204 11 O -1.005 7.005 12 O -1.013 7.013 13 N -0.990 5.990 14 C 0.103 3.897 15 C 0.245 3.755 16 H 0.039 0.961 17 C -0.153 4.153 18 C -0.586 4.586 19 H 0.054 0.946 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 1.054 2.946 23 H -0.280 1.280 24 H -0.244 1.244 25 H -0.287 1.287 26 C -0.133 4.133 27 C 0.064 3.936 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.421 0.579 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.043 0.957 48 H 0.057 0.943 49 H 0.257 0.743 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.038 0.962 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 -15.755 5.401 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.154 4.154 4 C -0.068 4.068 5 N -0.275 5.275 6 C -0.068 4.068 7 C -0.153 4.153 8 C 0.047 3.953 9 N -0.874 5.874 10 S 2.805 3.195 11 O -0.988 6.988 12 O -0.997 6.997 13 N -0.830 5.830 14 C -0.043 4.043 15 C 0.140 3.860 16 H 0.057 0.943 17 C -0.213 4.213 18 C -0.625 4.625 19 H 0.072 0.928 20 C -0.206 4.206 21 N -0.573 5.573 22 Si 0.878 3.122 23 H -0.206 1.206 24 H -0.167 1.167 25 H -0.213 1.213 26 C -0.172 4.172 27 C -0.065 4.065 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.256 0.744 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.056 0.944 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.397 -13.798 5.867 16.719 hybrid contribution 0.001 -1.612 -0.788 1.794 sum 7.398 -15.409 5.079 17.832 Atomic orbital electron populations 1.21781 0.95876 1.01973 1.01543 1.21451 0.95897 0.95726 1.02466 1.21618 0.94758 0.97318 1.01756 1.22135 0.95426 0.87865 1.01399 1.61938 1.14447 1.16366 1.34725 1.22094 0.86764 0.96043 1.01932 1.21851 1.02098 0.94982 0.96413 1.20909 0.94571 0.79686 1.00161 1.55797 1.83743 1.21229 1.26601 1.01231 0.73245 0.72059 0.72924 1.93534 1.56770 1.71023 1.77472 1.93537 1.85588 1.38626 1.81964 1.57421 1.47355 1.33125 1.45145 1.21354 1.02958 0.88882 0.91084 1.18829 0.88243 0.84080 0.94878 0.94288 1.22371 0.99792 0.99871 0.99219 1.22360 0.92552 0.94580 1.53022 0.92811 1.26532 0.92519 1.07770 0.93749 1.70922 1.20977 1.19562 1.45866 0.84008 0.77181 0.73263 0.77767 1.20614 1.16731 1.21341 1.22133 0.95898 0.96359 1.02857 1.21983 1.00809 0.93296 0.90395 0.93500 0.91777 0.92960 0.91788 0.91021 0.92215 0.93249 0.94608 0.89441 0.94223 0.88440 0.89430 0.90441 0.89961 0.74414 0.92374 0.91294 0.91197 0.92867 0.93831 0.92391 0.93397 0.92297 0.91365 0.94391 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.64 16 2 C -0.12 -1.73 5.93 30.60 0.18 -1.55 16 3 C -0.12 -2.17 5.14 30.60 0.16 -2.01 16 4 C 0.06 1.04 4.96 86.30 0.43 1.47 16 5 N -0.55 -11.85 4.66 -896.37 -4.17 -16.02 16 6 C 0.06 1.10 5.46 86.32 0.47 1.57 16 7 C -0.11 -2.35 5.63 30.64 0.17 -2.18 16 8 C 0.15 4.07 2.88 45.07 0.13 4.20 16 9 N -1.11 -33.06 5.54 -169.04 -0.94 -33.99 16 10 S 2.80 101.28 6.07 -56.49 -0.34 100.94 16 11 O -1.00 -37.84 16.55 -128.00 -2.12 -39.96 16 12 O -1.01 -42.60 16.70 -128.00 -2.14 -44.74 16 13 N -0.99 -37.51 2.87 -520.44 -1.49 -39.00 16 14 C 0.10 3.37 8.01 127.77 1.02 4.39 16 15 C 0.25 10.81 2.17 44.24 0.10 10.90 16 16 H 0.04 1.82 5.54 -2.39 -0.01 1.81 16 17 C -0.15 -6.26 8.57 71.98 0.62 -5.64 16 18 C -0.59 -29.27 8.37 25.60 0.21 -29.06 16 19 H 0.05 2.82 5.87 -2.91 -0.02 2.81 16 20 C -0.01 -0.30 5.33 84.65 0.45 0.16 16 21 N -0.94 -54.77 13.70 21.45 0.29 -54.48 16 22 Si 1.05 48.24 26.17 68.60 1.80 50.03 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.24 -10.12 5.53 99.48 0.55 -9.57 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 C -0.13 -3.96 5.70 30.65 0.17 -3.79 16 27 C 0.06 1.61 5.29 86.33 0.46 2.07 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.07 6.43 -2.39 -0.02 1.05 16 35 H 0.04 0.61 8.12 -2.39 -0.02 0.59 16 36 H 0.09 1.28 7.99 -2.39 -0.02 1.26 16 37 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.41 8.02 -2.38 -0.02 1.39 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 2.17 7.06 -2.39 -0.02 2.16 16 42 H 0.42 11.21 8.84 -96.75 -0.86 10.36 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 1.97 7.34 -2.39 -0.02 1.95 16 45 H 0.07 2.45 6.92 -2.39 -0.02 2.43 16 46 H 0.05 2.21 5.06 -2.39 -0.01 2.20 16 47 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.06 2.23 7.47 -2.39 -0.02 2.21 16 49 H 0.26 15.08 8.73 -92.71 -0.81 14.27 16 50 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.07 2.36 5.17 -2.39 -0.01 2.35 16 52 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.07 1.92 6.21 -2.39 -0.01 1.91 16 Total: -1.00 -64.16 405.97 -3.99 -68.15 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.16 Total: 30.19 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.29 Total: -21.13 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -6.31 Total: -143.49 kcal Atomic # 8 Polarization: -80.43 SS G_CDS: -4.26 Total: -84.69 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.80 Total: 50.03 kcal Atomic # 16 Polarization: 101.28 SS G_CDS: -0.34 Total: 100.94 kcal Total: -64.16 -3.99 -68.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330403456.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.197 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds