Wall clock time and date at job start Wed Apr 1 2020 04:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 C 1.53000 * 109.46941 * 239.99802 * 2 1 3 5 5 C 1.50698 * 109.47113 * 60.00459 * 4 2 1 6 6 H 1.08004 * 119.99667 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99604 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47110 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47035 * 119.99846 * 9 7 5 12 12 H 1.48496 * 109.47199 * 240.00319 * 9 7 5 13 13 C 1.53001 * 109.47098 * 120.00123 * 2 1 3 14 14 N 1.46507 * 109.46898 * 299.99994 * 13 2 1 15 15 C 1.34777 * 119.99634 * 179.97438 * 14 13 2 16 16 O 1.21588 * 120.00069 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99879 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00270 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47258 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46816 * 180.02562 * 19 18 17 21 21 C 1.38381 * 119.92545 * 270.01696 * 20 19 18 22 22 C 1.38339 * 120.29147 * 180.02562 * 21 20 19 23 23 C 1.37977 * 120.14762 * 359.70490 * 22 21 20 24 24 C 1.39555 * 119.84926 * 0.52925 * 23 22 21 25 25 C 1.47846 * 120.14561 * 179.76817 * 24 23 22 26 26 N 1.34777 * 119.99557 * 359.72046 * 25 24 23 27 27 O 1.21553 * 120.00154 * 179.72347 * 25 24 23 28 28 C 1.37935 * 119.93187 * 90.00425 * 20 19 18 29 29 H 1.09003 * 109.47375 * 300.00223 * 1 2 3 30 30 H 1.09006 * 109.47439 * 59.99882 * 1 2 3 31 31 H 1.09008 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47223 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47253 * 300.00338 * 3 2 1 34 34 H 1.09003 * 109.47107 * 59.99613 * 3 2 1 35 35 H 1.08999 * 109.46983 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47471 * 299.99929 * 4 2 1 37 37 H 0.97006 * 119.99440 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47096 * 179.97438 * 13 2 1 39 39 H 1.09007 * 109.47391 * 59.99802 * 13 2 1 40 40 H 0.97001 * 119.99825 * 0.02562 * 14 13 2 41 41 H 0.97001 * 119.99580 * 0.02562 * 17 15 14 42 42 H 1.09008 * 109.46987 * 59.99874 * 18 17 15 43 43 H 1.09000 * 109.47028 * 300.00613 * 18 17 15 44 44 H 1.08990 * 109.47047 * 60.00009 * 19 18 17 45 45 H 1.09003 * 109.46953 * 300.00100 * 19 18 17 46 46 H 1.08004 * 119.85575 * 0.02562 * 21 20 19 47 47 H 1.08007 * 119.92505 * 179.97438 * 22 21 20 48 48 H 1.08001 * 120.07501 * 180.27443 * 23 22 21 49 49 H 0.97001 * 120.00485 * 0.02562 * 26 25 24 50 50 H 0.97005 * 119.99790 * 179.72357 * 26 25 24 51 51 H 1.07998 * 120.06859 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3805 7 6 1.8712 -0.4816 -3.7320 8 7 2.6280 -1.5504 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 0.4227 1.5651 -4.8530 11 1 2.4027 0.8661 -6.0654 12 1 0.4236 -0.5353 -6.0655 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5758 -1.4800 3.7810 17 7 1.4279 0.1442 4.7700 18 6 1.7818 -0.3563 6.1006 19 6 1.1496 0.5399 7.1673 20 6 1.5142 0.0254 8.5360 21 6 0.7019 -0.9025 9.1637 22 6 1.0291 -1.3796 10.4203 23 6 2.1722 -0.9369 11.0536 24 6 2.9932 0.0025 10.4283 25 6 4.2169 0.4852 11.1031 26 7 4.5386 0.0221 12.3272 27 8 4.9328 1.2997 10.5538 28 6 2.6571 0.4801 9.1603 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 -0.7217 -1.2490 36 1 1.6766 -1.7490 -1.2492 37 1 2.8623 -1.8818 -4.7337 38 1 3.1300 -0.7217 1.2490 39 1 1.6766 -1.7490 1.2493 40 1 0.9936 0.7578 2.3564 41 1 0.8706 0.9331 4.6809 42 1 2.8658 -0.3481 6.2154 43 1 1.4120 -1.3752 6.2157 44 1 0.0658 0.5321 7.0527 45 1 1.5199 1.5586 7.0520 46 1 -0.1916 -1.2559 8.6703 47 1 0.3905 -2.1034 10.9049 48 1 2.4288 -1.3135 12.0328 49 1 3.9676 -0.6281 12.7654 50 1 5.3437 0.3357 12.7683 51 1 3.2901 1.2044 8.6695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352682549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:53 Heat of formation + Delta-G solvation = -68.853471 kcal Electronic energy + Delta-G solvation = -28931.577446 eV Core-core repulsion = 24829.744955 eV Total energy + Delta-G solvation = -4101.832491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64060 -39.85231 -38.85017 -37.28431 -35.57950 -34.32669 -33.57325 -32.75719 -31.94170 -31.52190 -28.83622 -27.05988 -26.48566 -26.00201 -24.67168 -23.87337 -22.68724 -22.02151 -20.84380 -20.47718 -18.83510 -18.43695 -17.59871 -17.20595 -16.53429 -16.42301 -16.06688 -15.94019 -15.28581 -15.20073 -15.12839 -14.66494 -14.27625 -14.26811 -14.10582 -14.07995 -13.43211 -13.38554 -13.19589 -12.98622 -12.71886 -12.26772 -12.13054 -12.11932 -12.04669 -11.71502 -11.48090 -11.11742 -11.00534 -10.82196 -10.62354 -10.53628 -10.37555 -10.22438 -10.21760 -10.03030 -9.85164 -9.46321 -9.30625 -9.17648 -9.16080 -8.89545 -8.52064 -8.34530 -5.98368 -3.99508 0.34694 0.82192 2.38199 2.85071 2.99011 3.31254 3.36519 3.39344 3.41657 3.44053 4.16084 4.24336 4.32505 4.44562 4.49347 4.63093 4.69398 4.71163 4.82132 5.00899 5.14424 5.32530 5.37291 5.47143 5.52776 5.61415 5.67563 5.74310 5.76475 5.78127 5.84432 6.06232 6.20486 6.24127 6.24851 6.31065 6.36613 6.44380 6.46405 6.62860 6.65389 6.79923 6.83198 7.05934 7.09563 7.10239 7.18036 7.66887 7.75054 7.79138 8.00644 8.21101 8.42545 8.81889 9.05591 9.63542 11.13123 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.001446 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.473129 B =19362.369873 C =19697.436850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.593 6.593 17 N -0.753 5.753 18 C 0.145 3.855 19 C -0.093 4.093 20 C -0.085 4.085 21 C -0.084 4.084 22 C -0.125 4.125 23 C -0.089 4.089 24 C -0.139 4.139 25 C 0.563 3.437 26 N -0.852 5.852 27 O -0.537 6.537 28 C -0.051 4.051 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.394 0.606 41 H 0.394 0.606 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.125 0.875 49 H 0.401 0.599 50 H 0.405 0.595 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 3.570 34.328 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.023 3.977 14 N -0.392 5.392 15 C 0.399 3.601 16 O -0.472 6.472 17 N -0.410 5.410 18 C 0.021 3.979 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.142 4.142 25 C 0.349 3.651 26 N -0.416 5.416 27 O -0.414 6.414 28 C -0.070 4.070 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.227 0.773 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.230 0.770 50 H 0.237 0.763 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.366 3.044 33.779 34.196 hybrid contribution -0.747 0.819 -0.500 1.216 sum -5.113 3.862 33.279 33.890 Atomic orbital electron populations 1.21749 0.95311 1.01115 1.00114 1.20917 0.95460 0.95888 0.95072 1.21749 1.00562 0.95891 1.00121 1.19094 0.96409 0.95240 0.89448 1.21227 1.31064 1.12056 0.90519 0.92208 1.25018 0.95338 0.95096 0.99091 1.69980 1.36976 1.23091 1.23297 0.86590 0.78587 0.79657 0.83463 1.19818 1.21161 1.21160 1.21487 0.98685 0.95615 0.81877 1.45369 1.56122 1.33157 1.04555 1.16005 0.80503 0.83009 0.80578 1.90924 1.42673 1.27564 1.86002 1.45084 1.57623 1.33370 1.04962 1.21082 1.00144 0.97227 0.79492 1.20814 1.01908 0.99992 0.90351 1.19660 0.95119 0.97707 0.96105 1.21350 0.99173 0.95028 0.94671 1.21105 0.97151 1.00569 0.95476 1.21274 0.94397 0.95678 0.99419 1.19851 0.96537 1.01135 0.96712 1.18315 0.85011 0.80620 0.81142 1.43756 1.30143 1.48184 1.19527 1.90845 1.52194 1.33336 1.65052 1.21218 0.95229 0.97680 0.92877 0.95316 0.91514 0.93387 0.93361 0.91513 0.95301 0.96297 0.96313 0.93116 0.92024 0.92045 0.77181 0.77253 0.91481 0.91528 0.89845 0.89827 0.85182 0.85142 0.85674 0.76984 0.76344 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.15 2.66 4.56 -4.04 -0.02 2.64 16 14 N -0.74 -10.86 4.96 -65.22 -0.32 -11.18 16 15 C 0.70 10.86 8.57 -86.92 -0.74 10.12 16 16 O -0.59 -11.96 16.34 5.29 0.09 -11.88 16 17 N -0.75 -8.06 5.56 -65.22 -0.36 -8.42 16 18 C 0.15 1.40 5.66 -4.04 -0.02 1.38 16 19 C -0.09 -0.58 5.45 -27.88 -0.15 -0.74 16 20 C -0.09 -0.60 5.13 -104.68 -0.54 -1.14 16 21 C -0.08 -0.49 9.69 -39.49 -0.38 -0.87 16 22 C -0.13 -0.62 10.03 -39.64 -0.40 -1.02 16 23 C -0.09 -0.45 9.54 -39.19 -0.37 -0.83 16 24 C -0.14 -1.07 5.87 -104.97 -0.62 -1.68 16 25 C 0.56 4.88 8.05 -12.33 -0.10 4.79 16 26 N -0.85 -3.63 8.82 30.53 0.27 -3.36 16 27 O -0.54 -7.00 17.18 5.32 0.09 -6.91 16 28 C -0.05 -0.43 9.24 -39.19 -0.36 -0.79 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.39 4.77 6.18 -40.82 -0.25 4.52 16 41 H 0.39 2.96 8.49 -40.82 -0.35 2.62 16 42 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 46 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 48 H 0.13 0.23 6.41 -52.49 -0.34 -0.10 16 49 H 0.40 0.49 6.86 -40.82 -0.28 0.21 16 50 H 0.41 1.31 8.93 -40.82 -0.36 0.95 16 51 H 0.14 1.25 7.65 -52.49 -0.40 0.85 16 LS Contribution 415.48 15.07 6.26 6.26 Total: -1.00 -36.58 415.48 -9.81 -46.39 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.88 Total: 3.70 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.67 Total: -5.05 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.32 Total: -48.74 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.18 Total: -18.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.58 -9.81 -46.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352682549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.463 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds