Wall clock time and date at job start Wed Apr 1 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 C 1.53000 * 109.46941 * 239.99802 * 2 1 3 5 5 C 1.50698 * 109.47113 * 60.00459 * 4 2 1 6 6 H 1.08004 * 119.99667 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99604 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47110 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47035 * 119.99846 * 9 7 5 12 12 H 1.48496 * 109.47199 * 240.00319 * 9 7 5 13 13 C 1.53001 * 109.47098 * 120.00123 * 2 1 3 14 14 N 1.46507 * 109.46898 * 299.99994 * 13 2 1 15 15 C 1.34777 * 119.99634 * 179.97438 * 14 13 2 16 16 O 1.21588 * 120.00069 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99879 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00270 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47258 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46816 * 180.02562 * 19 18 17 21 21 C 1.38381 * 119.92545 * 270.01696 * 20 19 18 22 22 C 1.38339 * 120.29147 * 180.02562 * 21 20 19 23 23 C 1.37977 * 120.14762 * 359.70490 * 22 21 20 24 24 C 1.39555 * 119.84926 * 0.52925 * 23 22 21 25 25 C 1.47846 * 120.14561 * 179.76817 * 24 23 22 26 26 N 1.34777 * 119.99557 * 359.72046 * 25 24 23 27 27 O 1.21553 * 120.00154 * 179.72347 * 25 24 23 28 28 C 1.37935 * 119.93187 * 90.00425 * 20 19 18 29 29 H 1.09003 * 109.47375 * 300.00223 * 1 2 3 30 30 H 1.09006 * 109.47439 * 59.99882 * 1 2 3 31 31 H 1.09008 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47223 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47253 * 300.00338 * 3 2 1 34 34 H 1.09003 * 109.47107 * 59.99613 * 3 2 1 35 35 H 1.08999 * 109.46983 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47471 * 299.99929 * 4 2 1 37 37 H 0.97006 * 119.99440 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47096 * 179.97438 * 13 2 1 39 39 H 1.09007 * 109.47391 * 59.99802 * 13 2 1 40 40 H 0.97001 * 119.99825 * 0.02562 * 14 13 2 41 41 H 0.97001 * 119.99580 * 0.02562 * 17 15 14 42 42 H 1.09008 * 109.46987 * 59.99874 * 18 17 15 43 43 H 1.09000 * 109.47028 * 300.00613 * 18 17 15 44 44 H 1.08990 * 109.47047 * 60.00009 * 19 18 17 45 45 H 1.09003 * 109.46953 * 300.00100 * 19 18 17 46 46 H 1.08004 * 119.85575 * 0.02562 * 21 20 19 47 47 H 1.08007 * 119.92505 * 179.97438 * 22 21 20 48 48 H 1.08001 * 120.07501 * 180.27443 * 23 22 21 49 49 H 0.97001 * 120.00485 * 0.02562 * 26 25 24 50 50 H 0.97005 * 119.99790 * 179.72357 * 26 25 24 51 51 H 1.07998 * 120.06859 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3805 7 6 1.8712 -0.4816 -3.7320 8 7 2.6280 -1.5504 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 0.4227 1.5651 -4.8530 11 1 2.4027 0.8661 -6.0654 12 1 0.4236 -0.5353 -6.0655 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5758 -1.4800 3.7810 17 7 1.4279 0.1442 4.7700 18 6 1.7818 -0.3563 6.1006 19 6 1.1496 0.5399 7.1673 20 6 1.5142 0.0254 8.5360 21 6 0.7019 -0.9025 9.1637 22 6 1.0291 -1.3796 10.4203 23 6 2.1722 -0.9369 11.0536 24 6 2.9932 0.0025 10.4283 25 6 4.2169 0.4852 11.1031 26 7 4.5386 0.0221 12.3272 27 8 4.9328 1.2997 10.5538 28 6 2.6571 0.4801 9.1603 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 -0.7217 -1.2490 36 1 1.6766 -1.7490 -1.2492 37 1 2.8623 -1.8818 -4.7337 38 1 3.1300 -0.7217 1.2490 39 1 1.6766 -1.7490 1.2493 40 1 0.9936 0.7578 2.3564 41 1 0.8706 0.9331 4.6809 42 1 2.8658 -0.3481 6.2154 43 1 1.4120 -1.3752 6.2157 44 1 0.0658 0.5321 7.0527 45 1 1.5199 1.5586 7.0520 46 1 -0.1916 -1.2559 8.6703 47 1 0.3905 -2.1034 10.9049 48 1 2.4288 -1.3135 12.0328 49 1 3.9676 -0.6281 12.7654 50 1 5.3437 0.3357 12.7683 51 1 3.2901 1.2044 8.6695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352682549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:52 Heat of formation + Delta-G solvation = -96.245721 kcal Electronic energy + Delta-G solvation = -28932.765263 eV Core-core repulsion = 24829.744955 eV Total energy + Delta-G solvation = -4103.020308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26321 -41.03443 -39.47354 -38.77830 -36.49229 -35.22649 -34.96515 -34.02894 -33.22433 -31.98503 -29.67079 -28.93156 -27.93249 -27.37063 -25.23568 -25.04878 -24.14547 -22.55782 -21.96854 -21.16926 -20.14051 -19.18294 -18.80239 -18.35528 -17.78130 -17.29391 -16.97335 -16.86635 -16.50265 -16.10002 -15.89023 -15.81285 -15.55269 -15.37382 -15.30719 -14.75554 -14.63126 -14.55133 -14.34513 -13.92454 -13.91146 -13.74463 -13.73066 -12.88697 -12.73848 -12.71606 -12.68192 -12.57524 -12.32295 -12.29721 -12.21126 -11.99882 -11.92589 -11.51488 -11.42863 -11.21444 -10.96404 -10.82834 -10.77996 -10.50782 -10.36968 -9.93430 -9.76850 -9.72359 -8.12579 -6.20338 -0.15150 0.35621 1.43031 1.43951 1.55775 1.71023 1.85075 2.17926 2.45653 2.50885 2.85272 3.22090 3.34593 3.80735 3.82880 3.92461 3.99699 4.07673 4.11671 4.14999 4.20854 4.25454 4.36612 4.52733 4.58026 4.71623 4.76005 4.78559 4.81347 4.97640 4.99669 5.01903 5.10393 5.14389 5.15216 5.29813 5.42380 5.42863 5.49252 5.52108 5.52669 5.56518 5.58196 5.61320 5.81530 5.82969 5.91791 5.93590 6.05211 6.32761 6.38583 6.95058 7.15620 7.24954 7.47433 7.61888 9.00216 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.001446 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.473129 B =19362.369873 C =19697.436850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.723 5.723 15 C 0.696 3.304 16 O -0.644 6.644 17 N -0.730 5.730 18 C 0.147 3.853 19 C -0.080 4.080 20 C -0.096 4.096 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.081 4.081 24 C -0.159 4.159 25 C 0.557 3.443 26 N -0.829 5.829 27 O -0.594 6.594 28 C -0.074 4.074 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.070 0.930 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.411 0.589 41 H 0.415 0.585 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.161 0.839 48 H 0.160 0.840 49 H 0.418 0.582 50 H 0.412 0.588 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 4.833 36.534 37.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.036 3.964 14 N -0.379 5.379 15 C 0.396 3.604 16 O -0.526 6.526 17 N -0.388 5.388 18 C 0.022 3.978 19 C -0.117 4.117 20 C -0.096 4.096 21 C -0.104 4.104 22 C -0.143 4.143 23 C -0.099 4.099 24 C -0.162 4.162 25 C 0.344 3.656 26 N -0.393 5.393 27 O -0.476 6.476 28 C -0.093 4.093 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.003 0.997 36 H 0.005 0.995 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.252 0.748 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.108 0.892 46 H 0.168 0.832 47 H 0.178 0.822 48 H 0.177 0.823 49 H 0.251 0.749 50 H 0.244 0.756 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.414 4.348 36.067 37.077 hybrid contribution 0.196 0.345 -1.049 1.122 sum -7.218 4.692 35.018 36.061 Atomic orbital electron populations 1.21678 0.93351 1.00979 1.01676 1.20718 0.96895 0.96283 0.92617 1.21684 0.99799 0.94633 1.01664 1.18980 0.94242 0.94258 0.92386 1.21634 1.30290 1.12071 0.91016 0.90787 1.25965 0.95693 0.95883 1.02777 1.70138 1.38839 1.25081 1.23983 0.85469 0.77999 0.78823 0.79174 1.17920 1.21200 1.21072 1.21042 0.97325 0.94991 0.82998 1.44989 1.56175 1.33378 1.03391 1.16196 0.80149 0.82651 0.81451 1.90898 1.44943 1.30003 1.86741 1.44879 1.56618 1.33261 1.03991 1.21121 0.99080 0.97861 0.79699 1.20724 1.02990 0.99264 0.88722 1.19717 0.95046 0.98476 0.96409 1.21680 0.99427 0.94159 0.95143 1.21515 0.97162 1.00484 0.95121 1.21642 0.93633 0.94114 1.00520 1.19922 0.96910 1.02512 0.96866 1.18623 0.84996 0.80061 0.81953 1.43583 1.30295 1.47408 1.18045 1.90810 1.54036 1.36080 1.66683 1.21226 0.95956 0.98338 0.93812 0.91021 0.92566 0.94449 0.94664 0.92526 0.91080 0.99711 0.99543 0.93232 0.94197 0.93898 0.75133 0.74846 0.93880 0.92293 0.87368 0.89250 0.83243 0.82186 0.82298 0.74939 0.75597 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.52 7.65 25.60 0.20 -27.32 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 8 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.16 5.94 4.56 86.38 0.39 6.33 16 14 N -0.72 -20.19 4.96 -478.51 -2.37 -22.57 16 15 C 0.70 21.07 8.57 179.05 1.53 22.60 16 16 O -0.64 -26.50 16.34 -3.99 -0.07 -26.56 16 17 N -0.73 -14.31 5.56 -478.53 -2.66 -16.97 16 18 C 0.15 2.72 5.66 86.38 0.49 3.21 16 19 C -0.08 -0.86 5.45 29.85 0.16 -0.70 16 20 C -0.10 -1.24 5.13 -19.90 -0.10 -1.34 16 21 C -0.09 -0.78 9.69 22.33 0.22 -0.57 16 22 C -0.13 -0.83 10.03 22.23 0.22 -0.61 16 23 C -0.08 -0.62 9.54 22.53 0.21 -0.40 16 24 C -0.16 -2.38 5.87 -20.09 -0.12 -2.49 16 25 C 0.56 9.81 8.05 86.79 0.70 10.51 16 26 N -0.83 -6.10 8.82 -175.60 -1.55 -7.65 16 27 O -0.59 -16.56 17.18 -3.88 -0.07 -16.63 16 28 C -0.07 -1.28 9.24 22.53 0.21 -1.07 16 29 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 30 H 0.06 1.99 6.62 -2.38 -0.02 1.97 16 31 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 34 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 35 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.41 8.49 6.18 -92.71 -0.57 7.92 16 41 H 0.41 4.86 8.49 -92.71 -0.79 4.07 16 42 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.11 0.66 8.08 -2.39 -0.02 0.64 16 45 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 46 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 47 H 0.16 0.13 8.06 -2.91 -0.02 0.10 16 48 H 0.16 -0.02 6.41 -2.91 -0.02 -0.03 16 49 H 0.42 -0.01 6.86 -92.71 -0.64 -0.64 16 50 H 0.41 2.29 8.93 -92.70 -0.83 1.46 16 51 H 0.12 2.40 7.65 -2.91 -0.02 2.38 16 Total: -1.00 -85.72 415.48 -0.41 -86.13 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -1.84 Total: 14.73 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.83 Total: 1.04 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -6.30 Total: -104.46 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.13 Total: -43.19 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -85.72 -0.41 -86.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352682549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -85.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds