Wall clock time and date at job start Wed Apr 1 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 C 1.52998 * 109.47347 * 174.55826 * 3 2 1 5 5 C 1.53001 * 109.47282 * 187.49382 * 4 3 2 6 6 C 1.52999 * 109.47338 * 294.56001 * 3 2 1 7 7 H 1.09006 * 109.46860 * 54.21058 * 6 3 2 8 8 N 1.46495 * 109.47631 * 174.21560 * 6 3 2 9 9 C 1.34780 * 119.99916 * 285.65181 * 8 6 3 10 10 O 1.21590 * 119.99871 * 4.95922 * 9 8 6 11 11 N 1.34773 * 119.99708 * 184.96892 * 9 8 6 12 12 C 1.46501 * 119.99740 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47156 * 179.97438 * 12 11 9 14 14 O 1.21295 * 120.00192 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00285 * 179.97438 * 13 12 11 16 16 C 1.37105 * 120.00277 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99563 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99561 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00528 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99302 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47508 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47265 * 120.00265 * 20 18 16 23 23 H 1.48507 * 109.47042 * 240.00086 * 20 18 16 24 24 C 1.50702 * 109.46849 * 294.21772 * 6 3 2 25 25 C 1.38233 * 119.99848 * 271.51432 * 24 6 3 26 26 C 1.38239 * 119.99871 * 179.79061 * 25 24 6 27 27 C 1.38233 * 120.00105 * 0.44018 * 26 25 24 28 28 C 1.38238 * 119.99600 * 359.81099 * 27 26 25 29 29 C 1.38229 * 120.00513 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46880 * 176.97114 * 1 2 3 31 31 H 1.08995 * 109.47517 * 296.97112 * 1 2 3 32 32 H 1.08998 * 109.47215 * 56.97497 * 1 2 3 33 33 H 1.09005 * 109.47301 * 119.99264 * 2 1 3 34 34 H 1.08996 * 109.47827 * 239.99780 * 2 1 3 35 35 H 1.09009 * 109.47359 * 54.55540 * 3 2 1 36 36 H 1.09000 * 109.47014 * 307.49364 * 4 3 2 37 37 H 1.09000 * 109.47041 * 67.48986 * 4 3 2 38 38 H 1.08998 * 109.46828 * 170.08373 * 5 4 3 39 39 H 1.08999 * 109.46704 * 290.07824 * 5 4 3 40 40 H 1.08993 * 109.47427 * 50.07679 * 5 4 3 41 41 H 0.97002 * 120.00265 * 105.64412 * 8 6 3 42 42 H 0.97002 * 120.00193 * 359.97438 * 11 9 8 43 43 H 1.08994 * 109.47250 * 299.99222 * 12 11 9 44 44 H 1.09001 * 109.47337 * 59.99522 * 12 11 9 45 45 H 0.97007 * 119.99708 * 359.97438 * 15 13 12 46 46 H 0.97000 * 119.99615 * 179.97438 * 19 18 16 47 47 H 1.08005 * 120.00002 * 0.02562 * 25 24 6 48 48 H 1.08002 * 119.99713 * 180.27771 * 26 25 24 49 49 H 1.07997 * 120.00113 * 179.83913 * 27 26 25 50 50 H 1.08004 * 119.99835 * 180.02562 * 28 27 26 51 51 H 1.07998 * 120.00224 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5637 1.4448 0.1368 5 6 4.0568 2.8810 0.3245 6 6 1.6446 2.1232 -1.3120 7 1 0.5685 2.0311 -1.4592 8 7 2.0103 3.5407 -1.2563 9 6 1.2834 4.3954 -0.5096 10 8 0.3802 3.9762 0.1882 11 7 1.5575 5.7147 -0.5366 12 6 0.7669 6.6438 0.2746 13 6 1.2725 8.0481 0.0662 14 8 2.2021 8.2527 -0.6857 15 7 0.6918 9.0767 0.7151 16 6 1.1521 10.3542 0.5259 17 1 1.9798 10.5363 -0.1435 18 6 0.5530 11.4147 1.1946 19 7 -0.4545 11.1931 2.0087 20 14 1.1798 13.1553 0.9362 21 1 2.3145 13.1359 -0.0216 22 1 0.0861 13.9995 0.3916 23 1 1.6374 13.7144 2.2336 24 6 2.3668 1.4627 -2.4580 25 6 3.6185 1.9109 -2.8364 26 6 4.2827 1.3022 -3.8849 27 6 3.6914 0.2513 -4.5607 28 6 2.4375 -0.1934 -4.1856 29 6 1.7751 0.4123 -3.1343 30 1 -0.3633 -1.0262 -0.0543 31 1 -0.3634 0.4661 0.9158 32 1 -0.3633 0.5601 -0.8616 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.5991 1.9838 0.8373 36 1 3.8519 0.8460 1.0008 37 1 4.0100 1.0221 -0.7634 38 1 5.1123 2.8701 0.5965 39 1 3.9271 3.4341 -0.6058 40 1 3.4824 3.3619 1.1161 41 1 2.7758 3.8642 -1.7568 42 1 2.2782 6.0491 -1.0932 43 1 -0.2799 6.5863 -0.0235 44 1 0.8601 6.3770 1.3273 45 1 -0.0519 8.9131 1.3161 46 1 -0.8724 11.9335 2.4758 47 1 4.0791 2.7342 -2.3105 48 1 5.2626 1.6495 -4.1776 49 1 4.2093 -0.2225 -5.3815 50 1 1.9756 -1.0148 -4.7133 51 1 0.7953 0.0650 -2.8416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358316149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:13 Heat of formation + Delta-G solvation = -46.742582 kcal Electronic energy + Delta-G solvation = -31089.496750 eV Core-core repulsion = 26988.623059 eV Total energy + Delta-G solvation = -4100.873690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95062 -39.34026 -38.21680 -37.13025 -34.38153 -34.00157 -33.56057 -32.36357 -31.41059 -31.19693 -30.96358 -28.12677 -27.12196 -25.10123 -24.22006 -23.00195 -22.09173 -21.98702 -20.74808 -19.69178 -19.41568 -18.59060 -18.06299 -17.18641 -16.26081 -16.06851 -15.63493 -15.44919 -15.17396 -14.92942 -14.63049 -14.56401 -14.19985 -14.00394 -13.83687 -13.75470 -13.46409 -13.32684 -13.18601 -12.98892 -12.66586 -12.58442 -12.29412 -12.16079 -11.99620 -11.65051 -11.62495 -11.39232 -11.30407 -11.15014 -11.07312 -10.92640 -10.63213 -10.45545 -10.40500 -10.31830 -9.91756 -9.63742 -9.17147 -9.09684 -8.87956 -8.61172 -8.49263 -8.08899 -6.50620 -3.92507 1.04829 1.11766 2.82877 3.10699 3.22876 3.29617 3.41180 3.52830 3.76616 4.09549 4.31967 4.43540 4.58082 4.69091 4.71206 4.78848 4.86303 4.90133 4.92634 5.13417 5.18234 5.18475 5.25235 5.32263 5.39956 5.42741 5.49419 5.66288 5.68372 5.74694 5.85360 5.89745 5.92620 5.96084 5.96915 6.02299 6.04469 6.09720 6.13631 6.19874 6.22263 6.26642 6.28830 6.39046 6.63232 6.70183 6.78456 7.10846 7.47038 7.93773 8.25263 8.46355 8.82881 9.05820 9.40836 9.88687 10.66392 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002177 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.597558 B =12857.298185 C =13563.758743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.121 4.121 5 C -0.154 4.154 6 C 0.213 3.787 7 H 0.092 0.908 8 N -0.743 5.743 9 C 0.706 3.294 10 O -0.594 6.594 11 N -0.725 5.725 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.108 4.108 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.395 0.605 42 H 0.405 0.595 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.273 0.727 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 -24.488 -8.172 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.117 4.117 4 C -0.158 4.158 5 C -0.211 4.211 6 C 0.108 3.892 7 H 0.110 0.890 8 N -0.401 5.401 9 C 0.406 3.594 10 O -0.472 6.472 11 N -0.382 5.382 12 C 0.001 3.999 13 C 0.215 3.785 14 O -0.484 6.484 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.081 4.081 25 C -0.134 4.134 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.233 0.767 42 H 0.243 0.757 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.083 0.917 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.644 -24.529 -7.911 26.384 hybrid contribution 0.486 1.163 -0.150 1.269 sum 6.130 -23.367 -8.061 25.467 Atomic orbital electron populations 1.21829 0.95683 1.01049 1.02551 1.21588 0.96084 0.95929 1.02077 1.21630 0.95961 0.96077 0.98043 1.21653 0.95026 0.97368 1.01774 1.22049 1.00174 0.96728 1.02149 1.19672 0.98883 0.78636 0.92033 0.89028 1.45475 1.33939 1.07773 1.52904 1.15802 0.82069 0.80873 0.80657 1.90897 1.33831 1.77431 1.45066 1.44784 1.39015 1.04519 1.49903 1.20765 0.95377 0.87986 0.95775 1.19782 0.86880 0.86025 0.85836 1.90491 1.31754 1.84685 1.41510 1.41800 1.31104 1.06045 1.39546 1.19769 1.16163 0.81723 1.25646 0.87664 1.25323 0.95963 1.00554 0.95942 1.69624 1.22505 1.33348 1.28015 0.85767 0.78789 0.81304 0.78274 1.19157 1.20622 1.20628 1.19873 0.95048 0.96875 0.96284 1.21067 0.94650 1.00305 0.97356 1.21143 1.00004 0.96422 0.95894 1.21161 0.95667 0.97296 0.99931 1.21124 0.95260 1.00011 0.97186 1.20981 1.00051 0.96069 0.95522 0.93091 0.92304 0.92570 0.91950 0.91724 0.89035 0.92347 0.91551 0.93459 0.92297 0.92636 0.76726 0.75742 0.90064 0.90074 0.77031 0.91660 0.85826 0.85975 0.86201 0.86027 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.75 37.16 0.36 -1.02 16 2 C -0.12 -1.05 5.17 -26.73 -0.14 -1.19 16 3 C -0.10 -1.02 1.78 -90.62 -0.16 -1.18 16 4 C -0.12 -1.17 4.91 -26.73 -0.13 -1.30 16 5 C -0.15 -1.61 8.61 37.16 0.32 -1.29 16 6 C 0.21 2.29 1.83 -69.08 -0.13 2.16 16 7 H 0.09 1.11 6.05 -51.93 -0.31 0.79 16 8 N -0.74 -8.86 2.93 -59.81 -0.18 -9.04 16 9 C 0.71 11.09 8.20 -86.92 -0.71 10.37 16 10 O -0.59 -11.01 15.23 5.29 0.08 -10.93 16 11 N -0.72 -12.03 5.53 -66.42 -0.37 -12.39 16 12 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 13 C 0.43 9.82 7.85 -10.99 -0.09 9.74 16 14 O -0.60 -15.22 15.24 5.54 0.08 -15.14 16 15 N -0.55 -13.65 5.29 -10.96 -0.06 -13.70 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 17 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.08 -0.74 3.89 -104.62 -0.41 -1.14 16 25 C -0.12 -1.00 6.91 -39.58 -0.27 -1.27 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 27 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 28 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 29 C -0.11 -0.90 7.99 -39.58 -0.32 -1.21 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.52 6.13 -51.93 -0.32 0.20 16 33 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.06 0.53 6.04 -51.93 -0.31 0.22 16 35 H 0.09 1.23 6.96 -51.92 -0.36 0.87 16 36 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 37 H 0.07 0.61 5.52 -51.93 -0.29 0.32 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.59 3.57 -51.93 -0.19 0.40 16 40 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 41 H 0.40 4.10 5.33 -40.82 -0.22 3.88 16 42 H 0.41 6.61 7.46 -40.82 -0.30 6.30 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.12 1.00 4.83 -52.48 -0.25 0.74 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 50 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 51 H 0.12 0.91 7.85 -52.49 -0.41 0.49 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -31.04 398.81 -9.31 -40.35 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -7.44 Total: 19.21 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -3.14 Total: 3.31 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.12 Total: -58.35 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.17 Total: -26.07 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.04 -9.31 -40.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.391 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds