Wall clock time and date at job start Wed Apr 1 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 C 1.52998 * 109.47347 * 174.55826 * 3 2 1 5 5 C 1.53001 * 109.47282 * 187.49382 * 4 3 2 6 6 C 1.52999 * 109.47338 * 294.56001 * 3 2 1 7 7 H 1.09006 * 109.46860 * 54.21058 * 6 3 2 8 8 N 1.46495 * 109.47631 * 174.21560 * 6 3 2 9 9 C 1.34780 * 119.99916 * 285.65181 * 8 6 3 10 10 O 1.21590 * 119.99871 * 4.95922 * 9 8 6 11 11 N 1.34773 * 119.99708 * 184.96892 * 9 8 6 12 12 C 1.46501 * 119.99740 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47156 * 179.97438 * 12 11 9 14 14 O 1.21295 * 120.00192 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00285 * 179.97438 * 13 12 11 16 16 C 1.37105 * 120.00277 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99563 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99561 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00528 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99302 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47508 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47265 * 120.00265 * 20 18 16 23 23 H 1.48507 * 109.47042 * 240.00086 * 20 18 16 24 24 C 1.50702 * 109.46849 * 294.21772 * 6 3 2 25 25 C 1.38233 * 119.99848 * 271.51432 * 24 6 3 26 26 C 1.38239 * 119.99871 * 179.79061 * 25 24 6 27 27 C 1.38233 * 120.00105 * 0.44018 * 26 25 24 28 28 C 1.38238 * 119.99600 * 359.81099 * 27 26 25 29 29 C 1.38229 * 120.00513 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46880 * 176.97114 * 1 2 3 31 31 H 1.08995 * 109.47517 * 296.97112 * 1 2 3 32 32 H 1.08998 * 109.47215 * 56.97497 * 1 2 3 33 33 H 1.09005 * 109.47301 * 119.99264 * 2 1 3 34 34 H 1.08996 * 109.47827 * 239.99780 * 2 1 3 35 35 H 1.09009 * 109.47359 * 54.55540 * 3 2 1 36 36 H 1.09000 * 109.47014 * 307.49364 * 4 3 2 37 37 H 1.09000 * 109.47041 * 67.48986 * 4 3 2 38 38 H 1.08998 * 109.46828 * 170.08373 * 5 4 3 39 39 H 1.08999 * 109.46704 * 290.07824 * 5 4 3 40 40 H 1.08993 * 109.47427 * 50.07679 * 5 4 3 41 41 H 0.97002 * 120.00265 * 105.64412 * 8 6 3 42 42 H 0.97002 * 120.00193 * 359.97438 * 11 9 8 43 43 H 1.08994 * 109.47250 * 299.99222 * 12 11 9 44 44 H 1.09001 * 109.47337 * 59.99522 * 12 11 9 45 45 H 0.97007 * 119.99708 * 359.97438 * 15 13 12 46 46 H 0.97000 * 119.99615 * 179.97438 * 19 18 16 47 47 H 1.08005 * 120.00002 * 0.02562 * 25 24 6 48 48 H 1.08002 * 119.99713 * 180.27771 * 26 25 24 49 49 H 1.07997 * 120.00113 * 179.83913 * 27 26 25 50 50 H 1.08004 * 119.99835 * 180.02562 * 28 27 26 51 51 H 1.07998 * 120.00224 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5637 1.4448 0.1368 5 6 4.0568 2.8810 0.3245 6 6 1.6446 2.1232 -1.3120 7 1 0.5685 2.0311 -1.4592 8 7 2.0103 3.5407 -1.2563 9 6 1.2834 4.3954 -0.5096 10 8 0.3802 3.9762 0.1882 11 7 1.5575 5.7147 -0.5366 12 6 0.7669 6.6438 0.2746 13 6 1.2725 8.0481 0.0662 14 8 2.2021 8.2527 -0.6857 15 7 0.6918 9.0767 0.7151 16 6 1.1521 10.3542 0.5259 17 1 1.9798 10.5363 -0.1435 18 6 0.5530 11.4147 1.1946 19 7 -0.4545 11.1931 2.0087 20 14 1.1798 13.1553 0.9362 21 1 2.3145 13.1359 -0.0216 22 1 0.0861 13.9995 0.3916 23 1 1.6374 13.7144 2.2336 24 6 2.3668 1.4627 -2.4580 25 6 3.6185 1.9109 -2.8364 26 6 4.2827 1.3022 -3.8849 27 6 3.6914 0.2513 -4.5607 28 6 2.4375 -0.1934 -4.1856 29 6 1.7751 0.4123 -3.1343 30 1 -0.3633 -1.0262 -0.0543 31 1 -0.3634 0.4661 0.9158 32 1 -0.3633 0.5601 -0.8616 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.5991 1.9838 0.8373 36 1 3.8519 0.8460 1.0008 37 1 4.0100 1.0221 -0.7634 38 1 5.1123 2.8701 0.5965 39 1 3.9271 3.4341 -0.6058 40 1 3.4824 3.3619 1.1161 41 1 2.7758 3.8642 -1.7568 42 1 2.2782 6.0491 -1.0932 43 1 -0.2799 6.5863 -0.0235 44 1 0.8601 6.3770 1.3273 45 1 -0.0519 8.9131 1.3161 46 1 -0.8724 11.9335 2.4758 47 1 4.0791 2.7342 -2.3105 48 1 5.2626 1.6495 -4.1776 49 1 4.2093 -0.2225 -5.3815 50 1 1.9756 -1.0148 -4.7133 51 1 0.7953 0.0650 -2.8416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358316149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:12 Heat of formation + Delta-G solvation = -65.308480 kcal Electronic energy + Delta-G solvation = -31090.301828 eV Core-core repulsion = 26988.623059 eV Total energy + Delta-G solvation = -4101.678768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90884 -40.58520 -39.80553 -38.01319 -36.21654 -35.26297 -34.90365 -33.36594 -33.15484 -32.01448 -31.58089 -29.38772 -28.27691 -26.53590 -25.53867 -23.66760 -22.84137 -22.73166 -21.91630 -21.36382 -20.43866 -20.06561 -19.72175 -18.20367 -17.46148 -17.11998 -16.93678 -16.57917 -16.52391 -16.18213 -16.00271 -15.58614 -15.55800 -15.23368 -15.14260 -14.86711 -14.39630 -14.11595 -14.01416 -13.92979 -13.77008 -13.60474 -13.54687 -13.40623 -13.31175 -13.03986 -12.91736 -12.46105 -12.44384 -12.15370 -12.11319 -11.94464 -11.91412 -11.67177 -11.57659 -11.54769 -11.28267 -11.13900 -10.54935 -10.29567 -10.09341 -9.80283 -9.73644 -9.49286 -8.50893 -6.00947 0.42468 0.52779 1.35086 1.42434 1.55467 1.63705 1.90275 2.15689 2.28644 2.89700 3.05032 3.16420 3.31761 3.56014 3.89991 3.91850 3.99867 4.12092 4.16320 4.21916 4.33308 4.36178 4.43454 4.46800 4.47213 4.58807 4.60120 4.61042 4.67160 4.77674 4.86717 5.03123 5.09297 5.10488 5.13740 5.17228 5.18449 5.22303 5.32709 5.37342 5.39325 5.42437 5.46261 5.57939 5.60572 5.67633 5.75662 5.91871 5.95456 6.12995 6.48455 7.02019 7.03935 7.43437 7.56298 7.94945 8.66322 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002177 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.597558 B =12857.298185 C =13563.758743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.093 4.093 4 C -0.114 4.114 5 C -0.152 4.152 6 C 0.215 3.785 7 H 0.077 0.923 8 N -0.726 5.726 9 C 0.707 3.293 10 O -0.622 6.622 11 N -0.725 5.725 12 C 0.143 3.857 13 C 0.435 3.565 14 O -0.623 6.623 15 N -0.560 5.560 16 C -0.335 4.335 17 H 0.086 0.914 18 C -0.012 4.012 19 N -0.917 5.917 20 Si 0.997 3.003 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.090 4.090 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.115 4.115 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.405 0.595 42 H 0.408 0.592 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.399 0.601 46 H 0.280 0.720 47 H 0.125 0.875 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.142 0.858 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 -25.750 -9.427 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.113 4.113 4 C -0.152 4.152 5 C -0.209 4.209 6 C 0.110 3.890 7 H 0.095 0.905 8 N -0.385 5.385 9 C 0.407 3.593 10 O -0.503 6.503 11 N -0.383 5.383 12 C 0.015 3.985 13 C 0.222 3.778 14 O -0.511 6.511 15 N -0.196 5.196 16 C -0.464 4.464 17 H 0.104 0.896 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.091 4.091 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.133 4.133 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.244 0.756 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.233 0.767 46 H 0.089 0.911 47 H 0.142 0.858 48 H 0.156 0.844 49 H 0.159 0.841 50 H 0.160 0.840 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.558 -25.827 -9.179 28.184 hybrid contribution 0.223 1.461 0.187 1.490 sum 6.781 -24.366 -8.992 26.843 Atomic orbital electron populations 1.21808 0.95881 1.01862 1.01375 1.21550 0.95853 0.94777 1.02881 1.21533 0.96455 0.96740 0.96586 1.21609 0.94267 0.96821 1.02465 1.22026 1.00380 0.97192 1.01321 1.19693 0.98384 0.77722 0.93160 0.90517 1.45407 1.33380 1.07990 1.51673 1.15861 0.82003 0.80678 0.80728 1.90880 1.35260 1.77774 1.46403 1.44702 1.38999 1.04700 1.49907 1.20551 0.95771 0.85536 0.96662 1.20420 0.85858 0.87212 0.84356 1.90467 1.32794 1.85529 1.42331 1.41847 1.31541 1.05985 1.40201 1.19761 1.16713 0.83257 1.26683 0.89591 1.26133 0.95877 1.03993 0.95230 1.69689 1.23027 1.34696 1.28261 0.84815 0.78265 0.76549 0.78368 1.19412 1.19642 1.19650 1.19719 0.95449 0.97651 0.96262 1.21139 0.94577 1.00624 0.97969 1.21389 1.00698 0.96454 0.95481 1.21487 0.95653 0.96885 1.00137 1.21405 0.95334 1.00308 0.96737 1.21125 1.00468 0.95918 0.95807 0.91302 0.94115 0.93057 0.91412 0.90478 0.92390 0.91910 0.90391 0.92459 0.92001 0.95223 0.75625 0.75475 0.89168 0.89213 0.76732 0.91096 0.85752 0.84396 0.84100 0.83982 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.75 71.98 0.70 -1.99 16 2 C -0.11 -1.91 5.17 30.59 0.16 -1.75 16 3 C -0.09 -1.96 1.78 -10.79 -0.02 -1.98 16 4 C -0.11 -2.12 4.91 30.59 0.15 -1.97 16 5 C -0.15 -3.16 8.61 71.98 0.62 -2.54 16 6 C 0.21 4.59 1.83 44.25 0.08 4.67 16 7 H 0.08 1.89 6.05 -2.38 -0.01 1.87 16 8 N -0.73 -17.39 2.93 -461.40 -1.35 -18.74 16 9 C 0.71 22.51 8.20 179.05 1.47 23.98 16 10 O -0.62 -23.61 15.23 -4.00 -0.06 -23.67 16 11 N -0.73 -24.25 5.53 -482.30 -2.67 -26.92 16 12 C 0.14 5.35 6.15 85.63 0.53 5.88 16 13 C 0.43 20.19 7.85 87.66 0.69 20.88 16 14 O -0.62 -32.23 15.24 -3.08 -0.05 -32.28 16 15 N -0.56 -28.33 5.29 -306.99 -1.62 -29.96 16 16 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 17 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 20 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C -0.09 -1.54 3.89 -19.86 -0.08 -1.62 16 25 C -0.12 -1.95 6.91 22.27 0.15 -1.79 16 26 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 27 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 28 C -0.12 -1.46 10.05 22.27 0.22 -1.23 16 29 C -0.11 -1.70 7.99 22.27 0.18 -1.52 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.95 6.13 -2.39 -0.01 0.94 16 33 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 34 H 0.08 1.14 6.04 -2.39 -0.01 1.12 16 35 H 0.06 1.63 6.96 -2.38 -0.02 1.61 16 36 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 37 H 0.08 1.30 5.52 -2.39 -0.01 1.28 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.21 3.57 -2.39 -0.01 1.20 16 40 H 0.03 0.76 8.06 -2.39 -0.02 0.74 16 41 H 0.40 8.24 5.33 -92.71 -0.49 7.74 16 42 H 0.41 13.36 7.46 -92.71 -0.69 12.66 16 43 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.40 19.44 7.90 -92.70 -0.73 18.70 16 46 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 47 H 0.12 1.84 4.83 -2.91 -0.01 1.82 16 48 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 49 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 50 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 51 H 0.13 1.70 7.85 -2.91 -0.02 1.68 16 Total: -1.00 -66.82 398.81 2.21 -64.62 By element: Atomic # 1 Polarization: 54.07 SS G_CDS: -0.93 Total: 53.14 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.58 Total: 18.55 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -5.36 Total: -124.32 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -0.11 Total: -55.95 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -66.82 2.21 -64.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.693 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds