Wall clock time and date at job start Wed Apr 1 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47032 * 120.00126 * 2 1 3 5 5 C 1.53002 * 109.46817 * 174.99671 * 4 2 1 6 6 N 1.46505 * 109.46961 * 179.97438 * 5 4 2 7 7 C 1.46498 * 119.99791 * 270.00220 * 6 5 4 8 8 C 1.50698 * 109.47172 * 263.68327 * 7 6 5 9 9 H 1.08007 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00459 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00306 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99868 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47069 * 89.99698 * 12 10 8 14 14 H 1.48498 * 109.47227 * 210.00224 * 12 10 8 15 15 H 1.48501 * 109.46817 * 330.00108 * 12 10 8 16 16 C 1.34766 * 119.99899 * 89.99741 * 6 5 4 17 17 O 1.21365 * 120.00513 * 354.63314 * 16 6 5 18 18 C 1.49355 * 120.00016 * 174.63025 * 16 6 5 19 19 O 1.21381 * 120.00094 * 0.29948 * 18 16 6 20 20 N 1.34774 * 120.00269 * 180.30932 * 18 16 6 21 21 C 1.39724 * 120.00208 * 184.82288 * 20 18 16 22 22 C 1.38931 * 120.07401 * 324.61390 * 21 20 18 23 23 C 1.38104 * 119.92181 * 180.27681 * 22 21 20 24 24 C 1.38291 * 120.07393 * 359.46479 * 23 22 21 25 25 C 1.50697 * 119.92506 * 180.25642 * 24 23 22 26 26 N 1.46897 * 109.47226 * 270.29981 * 25 24 23 27 27 C 1.38297 * 120.15556 * 0.55517 * 24 23 22 28 28 C 1.38097 * 120.07399 * 359.70180 * 27 24 23 29 29 H 1.09002 * 109.46825 * 300.00418 * 1 2 3 30 30 H 1.08999 * 109.47170 * 59.99539 * 1 2 3 31 31 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46825 * 239.99582 * 2 1 3 33 33 H 1.09000 * 109.46825 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47170 * 299.99587 * 3 2 1 35 35 H 1.08994 * 109.47384 * 59.99779 * 3 2 1 36 36 H 1.09000 * 109.47176 * 54.99663 * 4 2 1 37 37 H 1.08999 * 109.47082 * 294.99386 * 4 2 1 38 38 H 1.09000 * 109.47254 * 60.00040 * 5 4 2 39 39 H 1.08999 * 109.47061 * 299.99727 * 5 4 2 40 40 H 1.09002 * 109.47365 * 23.68157 * 7 6 5 41 41 H 1.09001 * 109.46959 * 143.68373 * 7 6 5 42 42 H 0.96993 * 119.99979 * 179.97438 * 11 10 8 43 43 H 0.96997 * 120.00104 * 4.81795 * 20 18 16 44 44 H 1.07999 * 120.03890 * 359.97438 * 22 21 20 45 45 H 1.07992 * 119.96092 * 179.74607 * 23 22 21 46 46 H 1.09003 * 109.46832 * 30.29599 * 25 24 23 47 47 H 1.08997 * 109.47474 * 150.29832 * 25 24 23 48 48 H 1.00902 * 111.00182 * 56.04044 * 26 25 24 49 49 H 1.00905 * 111.00309 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.96586 * 179.72352 * 27 24 23 51 51 H 1.07998 * 120.03985 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5213 2.3844 7 6 4.4017 -0.7530 3.5821 8 6 5.8862 -0.4942 3.5987 9 1 6.5080 -0.8654 2.7973 10 6 6.4508 0.2153 4.6373 11 7 7.7463 0.4416 4.6514 12 14 5.3757 0.8554 6.0243 13 1 5.2913 -0.1675 7.0975 14 1 5.9668 2.1019 6.5739 15 1 4.0144 1.1405 5.5041 16 6 4.1818 -2.8628 2.3832 17 8 3.8023 -3.5080 1.4279 18 6 4.7916 -3.5556 3.5574 19 8 5.1663 -2.9109 4.5152 20 7 4.9259 -4.8966 3.5537 21 6 5.4025 -5.5542 4.6906 22 6 6.3722 -4.9561 5.4857 23 6 6.8451 -5.6114 6.6056 24 6 6.3466 -6.8567 6.9420 25 6 6.8610 -7.5662 8.1680 26 7 8.0201 -8.3925 7.8054 27 6 5.3816 -7.4552 6.1526 28 6 4.9080 -6.8079 5.0284 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6053 -1.7198 1.2952 37 1 1.7517 -0.1583 2.1370 38 1 3.9995 0.1674 1.1420 39 1 3.8531 -1.3941 0.3002 40 1 3.8674 0.1970 3.5726 41 1 4.1215 -1.3186 4.4708 42 1 8.1434 0.9411 5.3819 43 1 4.6917 -5.4053 2.7617 44 1 6.7591 -3.9819 5.2256 45 1 7.6018 -5.1488 7.2218 46 1 7.1586 -6.8307 8.9154 47 1 6.0753 -8.2018 8.5765 48 1 8.7373 -7.8359 7.3650 49 1 8.3840 -8.8787 8.6113 50 1 4.9977 -8.4297 6.4158 51 1 4.1542 -7.2756 4.4126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415125449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:00 Heat of formation + Delta-G solvation = -61.119009 kcal Electronic energy + Delta-G solvation = -30963.102310 eV Core-core repulsion = 26861.605211 eV Total energy + Delta-G solvation = -4101.497099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.13171 -40.64146 -39.33014 -38.03847 -36.97187 -36.08997 -34.68153 -34.46852 -31.91505 -31.13924 -30.63345 -29.40373 -27.97671 -26.81909 -25.24845 -24.64705 -24.04561 -23.32356 -21.84388 -20.91240 -20.75048 -19.12527 -19.01897 -18.40616 -17.69838 -17.27390 -16.93512 -16.70925 -16.25521 -16.07036 -16.00824 -15.73586 -15.46753 -15.34889 -15.02642 -14.72077 -14.65416 -14.49735 -14.29824 -14.20621 -13.85792 -13.73055 -13.56190 -13.40940 -13.24459 -13.01806 -12.77841 -12.62470 -12.37729 -12.25506 -12.17982 -12.11040 -12.03472 -11.80547 -11.65242 -11.54463 -11.42042 -11.31975 -10.77432 -10.29094 -9.87860 -9.66418 -9.62675 -9.08693 -8.26839 -6.27722 0.03792 0.45048 0.61123 1.31524 1.38442 1.39036 1.44473 2.17166 2.35306 2.50221 2.78643 3.10823 3.33453 3.80631 3.88491 3.90556 3.93863 3.97829 4.06147 4.09744 4.25401 4.32645 4.44407 4.51906 4.53596 4.60518 4.65376 4.72588 4.77815 4.81705 4.83126 4.89478 4.94157 5.05959 5.08478 5.11463 5.14637 5.28276 5.31606 5.33433 5.43072 5.46605 5.48988 5.52458 5.54267 5.64083 6.02362 6.04747 6.11354 6.18771 6.36450 6.59802 6.68094 6.74339 7.01523 7.33510 8.90247 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010534 B = 0.003188 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.448764 B = 8779.751809 C =10776.029571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.119 4.119 5 C 0.112 3.888 6 N -0.561 5.561 7 C 0.213 3.787 8 C -0.505 4.505 9 H 0.026 0.974 10 C 0.025 3.975 11 N -0.947 5.947 12 Si 0.934 3.066 13 H -0.278 1.278 14 H -0.282 1.282 15 H -0.238 1.238 16 C 0.507 3.493 17 O -0.552 6.552 18 C 0.488 3.512 19 O -0.477 6.477 20 N -0.644 5.644 21 C 0.131 3.869 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.101 4.101 25 C 0.107 3.893 26 N -0.851 5.851 27 C -0.078 4.078 28 C -0.136 4.136 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.264 0.736 43 H 0.427 0.573 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.038 0.962 47 H 0.095 0.905 48 H 0.342 0.658 49 H 0.354 0.646 50 H 0.157 0.843 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -12.099 0.641 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.157 4.157 5 C -0.010 4.010 6 N -0.290 5.290 7 C 0.092 3.908 8 C -0.544 4.544 9 H 0.044 0.956 10 C -0.173 4.173 11 N -0.588 5.588 12 Si 0.758 3.242 13 H -0.204 1.204 14 H -0.208 1.208 15 H -0.162 1.162 16 C 0.290 3.710 17 O -0.433 6.433 18 C 0.269 3.731 19 O -0.348 6.348 20 N -0.293 5.293 21 C 0.037 3.963 22 C -0.164 4.164 23 C -0.123 4.123 24 C -0.102 4.102 25 C -0.023 4.023 26 N -0.382 5.382 27 C -0.097 4.097 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.266 0.734 44 H 0.122 0.878 45 H 0.142 0.858 46 H 0.056 0.944 47 H 0.113 0.887 48 H 0.155 0.845 49 H 0.168 0.832 50 H 0.174 0.826 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.831 -12.170 0.440 16.297 hybrid contribution 1.006 1.194 0.864 1.784 sum -9.825 -10.976 1.304 14.788 Atomic orbital electron populations 1.21789 0.93909 1.01868 1.02312 1.21036 0.96709 0.96281 0.96861 1.21917 1.00956 0.95622 1.02313 1.21927 0.93549 1.00840 0.99398 1.21808 0.95388 0.97571 0.86198 1.47951 1.59869 1.05068 1.16126 1.19977 0.94931 0.92075 0.83836 1.21179 0.92116 1.33713 1.07345 0.95611 1.25530 0.95838 0.95978 0.99936 1.70037 1.12396 1.42513 1.33804 0.85920 0.80618 0.77707 0.79927 1.20433 1.20754 1.16154 1.19859 0.80288 0.83704 0.87174 1.90647 1.51030 1.65378 1.36231 1.20463 0.80786 0.83282 0.88525 1.90906 1.44286 1.64242 1.35360 1.43035 1.63978 1.05983 1.16273 1.17964 0.95252 0.94047 0.89060 1.21254 0.97102 1.00634 0.97442 1.21022 0.99865 0.95227 0.96216 1.20027 0.97971 0.93887 0.98361 1.20659 0.94561 0.95058 0.92018 1.58735 1.11371 1.33817 1.34308 1.21115 0.95699 0.99972 0.92934 1.21193 1.01427 0.93765 0.99219 0.92688 0.91339 0.92784 0.90839 0.93175 0.91285 0.92713 0.92354 0.91885 0.89567 0.90570 0.93713 0.93035 0.92667 0.73420 0.87845 0.85800 0.94353 0.88655 0.84520 0.83182 0.82577 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.09 -1.97 2.92 -10.79 -0.03 -2.01 16 3 C -0.15 -3.19 8.95 71.98 0.64 -2.55 16 4 C -0.12 -3.31 5.01 30.60 0.15 -3.15 16 5 C 0.11 3.82 5.09 86.38 0.44 4.26 16 6 N -0.56 -23.28 2.47 -827.85 -2.05 -25.32 16 7 C 0.21 9.98 3.83 85.63 0.33 10.30 16 8 C -0.50 -28.64 8.34 25.60 0.21 -28.43 16 9 H 0.03 1.66 8.06 -2.91 -0.02 1.63 16 10 C 0.02 1.45 5.47 84.65 0.46 1.91 16 11 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 12 Si 0.93 44.33 27.47 68.60 1.88 46.21 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 16 C 0.51 20.95 7.67 87.24 0.67 21.62 16 17 O -0.55 -22.11 16.12 -3.29 -0.05 -22.16 16 18 C 0.49 20.26 7.57 87.24 0.66 20.92 16 19 O -0.48 -23.08 9.57 -3.34 -0.03 -23.11 16 20 N -0.64 -21.59 5.32 -304.83 -1.62 -23.21 16 21 C 0.13 4.20 6.29 38.22 0.24 4.44 16 22 C -0.14 -5.26 8.69 22.40 0.19 -5.07 16 23 C -0.10 -3.10 9.69 22.25 0.22 -2.88 16 24 C -0.10 -2.38 5.40 -19.84 -0.11 -2.48 16 25 C 0.11 1.86 6.91 85.56 0.59 2.45 16 26 N -0.85 -13.53 9.61 -190.02 -1.83 -15.36 16 27 C -0.08 -1.68 9.69 22.25 0.22 -1.46 16 28 C -0.14 -3.27 9.97 22.40 0.22 -3.05 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.17 6.57 -2.39 -0.02 1.15 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 2.95 6.49 -2.39 -0.02 2.93 16 39 H 0.08 2.60 7.50 -2.39 -0.02 2.58 16 40 H 0.04 1.97 7.08 -2.39 -0.02 1.96 16 41 H 0.05 2.51 5.26 -2.39 -0.01 2.50 16 42 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.43 12.02 8.30 -92.71 -0.77 11.25 16 44 H 0.10 4.71 6.24 -2.91 -0.02 4.69 16 45 H 0.12 3.45 8.06 -2.91 -0.02 3.42 16 46 H 0.04 0.65 8.09 -2.39 -0.02 0.63 16 47 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 48 H 0.34 5.68 8.99 -89.69 -0.81 4.88 16 49 H 0.35 3.97 9.08 -89.69 -0.81 3.16 16 50 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 51 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -72.14 413.31 0.90 -71.24 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -1.48 Total: 37.81 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.77 Total: 12.90 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -5.20 Total: -122.88 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.09 Total: -45.28 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -72.14 0.90 -71.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415125449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.121 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds