Wall clock time and date at job start Wed Apr 1 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47380 * 2 1 4 4 C 1.53004 * 109.47053 * 120.00220 * 2 1 3 5 5 H 1.08995 * 109.47083 * 299.99857 * 4 2 1 6 6 N 1.46905 * 109.47112 * 60.00011 * 4 2 1 7 7 C 1.53000 * 109.47097 * 179.97438 * 4 2 1 8 8 C 1.52993 * 109.47322 * 174.99836 * 7 4 2 9 9 N 1.46501 * 109.47340 * 179.97438 * 8 7 4 10 10 C 1.46500 * 120.00385 * 269.99904 * 9 8 7 11 11 C 1.34777 * 119.99757 * 90.00513 * 9 8 7 12 12 O 1.21360 * 120.00127 * 354.41372 * 11 9 8 13 13 C 1.49359 * 119.99930 * 174.14292 * 11 9 8 14 14 O 1.21370 * 119.99901 * 0.57795 * 13 11 9 15 15 N 1.34773 * 119.99773 * 180.58557 * 13 11 9 16 16 C 1.39740 * 119.99973 * 174.36978 * 15 13 11 17 17 C 1.39343 * 119.95429 * 150.63963 * 16 15 13 18 18 C 1.38477 * 120.42182 * 180.02562 * 17 16 15 19 19 C 1.37690 * 120.33184 * 359.97438 * 18 17 16 20 20 C 1.40747 * 119.89151 * 0.02562 * 19 18 17 21 21 C 1.41417 * 120.20482 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00388 * 213.20255 * 21 20 19 23 23 C 1.39939 * 119.99906 * 33.20041 * 21 20 19 24 24 N 1.30823 * 119.99839 * 6.32687 * 23 21 20 25 25 Si 1.86798 * 119.99740 * 186.32116 * 23 21 20 26 26 H 1.48501 * 109.47029 * 60.00198 * 25 23 21 27 27 H 1.48498 * 109.46816 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47486 * 300.00110 * 25 23 21 29 29 C 1.38300 * 119.95369 * 330.36921 * 16 15 13 30 30 H 1.08998 * 109.47759 * 299.99687 * 1 2 3 31 31 H 1.09001 * 109.47556 * 59.99885 * 1 2 3 32 32 H 1.09007 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47271 * 240.00253 * 2 1 3 34 34 H 1.09003 * 109.47385 * 300.00496 * 3 2 1 35 35 H 1.09009 * 109.46712 * 59.99910 * 3 2 1 36 36 H 1.08999 * 109.47576 * 179.97438 * 3 2 1 37 37 H 1.00897 * 110.99808 * 296.04807 * 6 4 2 38 38 H 1.00907 * 110.99531 * 60.00130 * 6 4 2 39 39 H 1.09003 * 109.47199 * 54.99923 * 7 4 2 40 40 H 1.09002 * 109.47615 * 295.00535 * 7 4 2 41 41 H 1.09004 * 109.47097 * 60.00429 * 8 7 4 42 42 H 1.09000 * 109.47528 * 300.00110 * 8 7 4 43 43 H 1.08997 * 109.47548 * 263.73294 * 10 9 8 44 44 H 1.09005 * 109.46766 * 23.72824 * 10 9 8 45 45 H 1.08998 * 109.47053 * 143.72292 * 10 9 8 46 46 H 0.96998 * 120.00401 * 354.37157 * 15 13 11 47 47 H 1.07994 * 119.79074 * 359.97438 * 17 16 15 48 48 H 1.08001 * 119.83081 * 179.97438 * 18 17 16 49 49 H 1.07999 * 120.05449 * 180.02562 * 19 18 17 50 50 H 0.97005 * 119.99947 * 180.02562 * 24 23 21 51 51 H 1.08004 * 120.16255 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 7 1.5502 -2.1063 1.2492 7 6 3.5699 -0.7219 1.2489 8 6 4.0800 -1.3315 2.5562 9 7 5.5450 -1.3326 2.5556 10 6 6.2765 -2.4831 2.0195 11 6 6.2198 -0.2751 3.0485 12 8 5.6182 0.7189 3.3989 13 6 7.7075 -0.3289 3.1690 14 8 8.3097 -1.3209 2.8133 15 7 8.3813 0.7240 3.6728 16 6 9.7577 0.6311 3.8954 17 6 10.5540 1.7717 3.8150 18 6 11.9191 1.6907 4.0333 19 6 12.5047 0.4811 4.3330 20 6 11.7132 -0.6796 4.4177 21 6 12.3078 -1.9254 4.7246 22 1 11.9088 -2.8340 4.2983 23 6 13.4135 -1.9811 5.5806 24 7 13.8207 -0.8998 6.1942 25 14 14.3077 -3.5993 5.8473 26 1 14.8335 -4.0939 4.5495 27 1 15.4346 -3.3923 6.7919 28 1 13.3656 -4.5982 6.4127 29 6 10.3268 -0.5918 4.2008 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.1299 1.4425 0.0005 37 1 0.5437 -2.1340 1.3141 38 1 1.8738 -2.6042 0.4333 39 1 3.9336 0.3017 1.1592 40 1 3.9329 -1.3115 0.4071 41 1 3.7163 -2.3552 2.6459 42 1 3.7171 -0.7418 3.3981 43 1 6.5552 -3.1491 2.8361 44 1 5.6427 -3.0196 1.3133 45 1 7.1757 -2.1367 1.5101 46 1 7.9108 1.5463 3.8809 47 1 10.1040 2.7249 3.5801 48 1 12.5274 2.5807 3.9681 49 1 13.5697 0.4231 4.5029 50 1 14.5873 -0.9383 6.7873 51 1 9.7099 -1.4758 4.2682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415501423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:56 Heat of formation + Delta-G solvation = -51.216990 kcal Electronic energy + Delta-G solvation = -30193.451068 eV Core-core repulsion = 26092.383352 eV Total energy + Delta-G solvation = -4101.067715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.73080 -39.02970 -38.26613 -37.13701 -35.96969 -34.41536 -33.00628 -32.68544 -30.92659 -29.83121 -28.54496 -27.60916 -26.77256 -25.82691 -25.29951 -23.65185 -22.07020 -21.10079 -20.51610 -20.34177 -19.29049 -17.90430 -17.30293 -16.69969 -16.65417 -15.99611 -15.52191 -15.39722 -15.22061 -14.92305 -14.75180 -14.61627 -14.38074 -14.02998 -13.86738 -13.38818 -13.06758 -12.95333 -12.87939 -12.83466 -12.56014 -12.39581 -12.29842 -12.17950 -11.99611 -11.73722 -11.62785 -11.30319 -11.24322 -11.15924 -11.10749 -11.00966 -10.91766 -10.82711 -10.48529 -10.08284 -9.61866 -9.45019 -9.11743 -9.10962 -8.80787 -8.72610 -7.41855 -6.94091 -6.63324 -4.36818 1.56429 2.50188 2.78444 2.92822 3.10712 3.14415 3.20452 3.58264 3.72854 3.99668 4.16668 4.30376 4.46488 4.57721 4.64024 4.70128 4.85861 5.00232 5.05538 5.18526 5.24055 5.26521 5.36519 5.43351 5.45970 5.54084 5.64658 5.66931 5.69635 5.75867 5.82113 5.95314 6.01691 6.03626 6.19556 6.33463 6.36352 6.63828 6.75079 6.82804 6.98556 7.03531 7.05824 7.09611 7.25996 7.42403 7.66713 7.79491 7.89784 8.08303 8.10439 8.19180 8.48322 8.66364 8.93447 8.96117 10.30669 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002018 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.203326 B =13875.114969 C =14931.658546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.149 4.149 4 C 0.098 3.902 5 H 0.083 0.917 6 N -0.843 5.843 7 C -0.129 4.129 8 C 0.121 3.879 9 N -0.589 5.589 10 C 0.075 3.925 11 C 0.508 3.492 12 O -0.527 6.527 13 C 0.495 3.505 14 O -0.493 6.493 15 N -0.633 5.633 16 C 0.141 3.859 17 C -0.249 4.249 18 C -0.095 4.095 19 C -0.157 4.157 20 C 0.120 3.880 21 C -0.462 4.462 22 H 0.077 0.923 23 C 0.072 3.928 24 N -0.809 5.809 25 Si 0.913 3.087 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.266 1.266 29 C -0.204 4.204 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.341 0.659 38 H 0.339 0.661 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.410 0.590 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.120 0.880 50 H 0.279 0.721 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.587 -0.153 -10.127 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.206 4.206 4 C -0.014 4.014 5 H 0.101 0.899 6 N -0.372 5.372 7 C -0.168 4.168 8 C -0.001 4.001 9 N -0.323 5.323 10 C -0.067 4.067 11 C 0.290 3.710 12 O -0.403 6.403 13 C 0.276 3.724 14 O -0.368 6.368 15 N -0.277 5.277 16 C 0.049 3.951 17 C -0.270 4.270 18 C -0.114 4.114 19 C -0.177 4.177 20 C 0.117 3.883 21 C -0.493 4.493 22 H 0.095 0.905 23 C -0.143 4.143 24 N -0.435 5.435 25 Si 0.738 3.262 26 H -0.190 1.190 27 H -0.205 1.205 28 H -0.191 1.191 29 C -0.225 4.225 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.246 0.754 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.138 0.862 50 H 0.090 0.910 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.913 -0.394 -9.316 22.898 hybrid contribution -0.357 0.029 -0.598 0.697 sum -21.270 -0.365 -9.914 23.470 Atomic orbital electron populations 1.21867 0.95227 1.01449 1.02186 1.21930 0.95957 0.97726 0.99433 1.21866 1.01628 0.95350 1.01797 1.21469 0.94452 0.88493 0.96998 0.89858 1.58968 1.16278 1.14015 1.47966 1.22043 0.94227 1.02223 0.98287 1.21545 0.77487 1.02915 0.98133 1.47767 1.07072 1.18106 1.59316 1.22237 0.97436 0.87610 0.99437 1.20330 0.88617 0.83423 0.78586 1.90718 1.70029 1.30925 1.48631 1.19982 0.87885 0.84562 0.79972 1.90751 1.69237 1.31049 1.45781 1.43152 1.08330 1.15678 1.60566 1.17501 0.79810 0.95826 1.01951 1.20094 0.94134 0.95536 1.17214 1.20502 0.93367 0.97132 1.00439 1.21419 1.00187 0.92013 1.04066 1.17509 0.89733 0.93583 0.87485 1.19489 1.10919 0.93940 1.24946 0.90475 1.25858 0.96087 0.98054 0.94315 1.69765 1.22497 1.29156 1.22126 0.86296 0.78999 0.82019 0.78916 1.18956 1.20453 1.19110 1.21184 0.95304 0.95376 1.10675 0.92388 0.92534 0.92925 0.91385 0.92888 0.92432 0.91997 0.84581 0.84878 0.90528 0.91827 0.88918 0.90120 0.91807 0.91737 0.88413 0.75441 0.88936 0.88757 0.86199 0.91024 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.86 37.15 0.33 -0.45 16 2 C -0.13 -0.80 2.66 -90.62 -0.24 -1.05 16 3 C -0.15 -1.05 8.85 37.16 0.33 -0.72 16 4 C 0.10 0.68 2.39 -67.71 -0.16 0.52 16 5 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 6 N -0.84 -4.92 8.57 -4.66 -0.04 -4.96 16 7 C -0.13 -1.13 4.97 -26.73 -0.13 -1.27 16 8 C 0.12 1.27 5.22 -4.04 -0.02 1.24 16 9 N -0.59 -7.61 2.87 -182.12 -0.52 -8.13 16 10 C 0.07 0.89 9.26 59.85 0.55 1.44 16 11 C 0.51 8.04 7.72 -11.63 -0.09 7.95 16 12 O -0.53 -8.89 16.12 5.49 0.09 -8.80 16 13 C 0.49 9.09 7.52 -11.63 -0.09 9.00 16 14 O -0.49 -9.98 10.72 5.48 0.06 -9.92 16 15 N -0.63 -12.02 5.33 -10.34 -0.06 -12.07 16 16 C 0.14 3.19 6.34 -83.82 -0.53 2.65 16 17 C -0.25 -5.45 9.96 -39.08 -0.39 -5.84 16 18 C -0.10 -2.20 10.01 -39.69 -0.40 -2.59 16 19 C -0.16 -4.07 8.63 -38.83 -0.34 -4.40 16 20 C 0.12 3.24 5.51 -106.85 -0.59 2.66 16 21 C -0.46 -12.52 9.05 -37.74 -0.34 -12.86 16 22 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 23 C 0.07 1.85 5.30 -17.34 -0.09 1.76 16 24 N -0.81 -21.16 10.92 55.55 0.61 -20.55 16 25 Si 0.91 19.15 29.56 -169.99 -5.03 14.12 16 26 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 28 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 29 C -0.20 -5.19 8.41 -38.67 -0.33 -5.51 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.23 6.77 -51.92 -0.35 -0.13 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 37 H 0.34 1.62 7.39 -39.29 -0.29 1.33 16 38 H 0.34 1.73 9.00 -39.29 -0.35 1.37 16 39 H 0.08 0.80 6.17 -51.93 -0.32 0.48 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.87 7.68 -51.93 -0.40 0.47 16 42 H 0.08 0.94 7.51 -51.93 -0.39 0.55 16 43 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 44 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 45 H 0.10 1.36 5.86 -51.93 -0.30 1.05 16 46 H 0.41 6.80 8.28 -40.82 -0.34 6.46 16 47 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 48 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 49 H 0.12 3.19 6.40 -52.49 -0.34 2.86 16 50 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 51 H 0.11 2.91 6.13 -52.48 -0.32 2.58 16 LS Contribution 409.01 15.07 6.16 6.16 Total: -1.00 -29.40 409.01 -9.17 -38.57 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.92 Total: 13.04 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.52 Total: -7.46 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.01 Total: -45.72 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.15 Total: -18.72 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.40 -9.17 -38.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415501423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.645 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds