Wall clock time and date at job start Wed Apr 1 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47380 * 2 1 4 4 C 1.53004 * 109.47053 * 120.00220 * 2 1 3 5 5 H 1.08995 * 109.47083 * 299.99857 * 4 2 1 6 6 N 1.46905 * 109.47112 * 60.00011 * 4 2 1 7 7 C 1.53000 * 109.47097 * 179.97438 * 4 2 1 8 8 C 1.52993 * 109.47322 * 174.99836 * 7 4 2 9 9 N 1.46501 * 109.47340 * 179.97438 * 8 7 4 10 10 C 1.46500 * 120.00385 * 269.99904 * 9 8 7 11 11 C 1.34777 * 119.99757 * 90.00513 * 9 8 7 12 12 O 1.21360 * 120.00127 * 354.41372 * 11 9 8 13 13 C 1.49359 * 119.99930 * 174.14292 * 11 9 8 14 14 O 1.21370 * 119.99901 * 0.57795 * 13 11 9 15 15 N 1.34773 * 119.99773 * 180.58557 * 13 11 9 16 16 C 1.39740 * 119.99973 * 174.36978 * 15 13 11 17 17 C 1.39343 * 119.95429 * 150.63963 * 16 15 13 18 18 C 1.38477 * 120.42182 * 180.02562 * 17 16 15 19 19 C 1.37690 * 120.33184 * 359.97438 * 18 17 16 20 20 C 1.40747 * 119.89151 * 0.02562 * 19 18 17 21 21 C 1.41417 * 120.20482 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00388 * 213.20255 * 21 20 19 23 23 C 1.39939 * 119.99906 * 33.20041 * 21 20 19 24 24 N 1.30823 * 119.99839 * 6.32687 * 23 21 20 25 25 Si 1.86798 * 119.99740 * 186.32116 * 23 21 20 26 26 H 1.48501 * 109.47029 * 60.00198 * 25 23 21 27 27 H 1.48498 * 109.46816 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47486 * 300.00110 * 25 23 21 29 29 C 1.38300 * 119.95369 * 330.36921 * 16 15 13 30 30 H 1.08998 * 109.47759 * 299.99687 * 1 2 3 31 31 H 1.09001 * 109.47556 * 59.99885 * 1 2 3 32 32 H 1.09007 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47271 * 240.00253 * 2 1 3 34 34 H 1.09003 * 109.47385 * 300.00496 * 3 2 1 35 35 H 1.09009 * 109.46712 * 59.99910 * 3 2 1 36 36 H 1.08999 * 109.47576 * 179.97438 * 3 2 1 37 37 H 1.00897 * 110.99808 * 296.04807 * 6 4 2 38 38 H 1.00907 * 110.99531 * 60.00130 * 6 4 2 39 39 H 1.09003 * 109.47199 * 54.99923 * 7 4 2 40 40 H 1.09002 * 109.47615 * 295.00535 * 7 4 2 41 41 H 1.09004 * 109.47097 * 60.00429 * 8 7 4 42 42 H 1.09000 * 109.47528 * 300.00110 * 8 7 4 43 43 H 1.08997 * 109.47548 * 263.73294 * 10 9 8 44 44 H 1.09005 * 109.46766 * 23.72824 * 10 9 8 45 45 H 1.08998 * 109.47053 * 143.72292 * 10 9 8 46 46 H 0.96998 * 120.00401 * 354.37157 * 15 13 11 47 47 H 1.07994 * 119.79074 * 359.97438 * 17 16 15 48 48 H 1.08001 * 119.83081 * 179.97438 * 18 17 16 49 49 H 1.07999 * 120.05449 * 180.02562 * 19 18 17 50 50 H 0.97005 * 119.99947 * 180.02562 * 24 23 21 51 51 H 1.08004 * 120.16255 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 7 1.5502 -2.1063 1.2492 7 6 3.5699 -0.7219 1.2489 8 6 4.0800 -1.3315 2.5562 9 7 5.5450 -1.3326 2.5556 10 6 6.2765 -2.4831 2.0195 11 6 6.2198 -0.2751 3.0485 12 8 5.6182 0.7189 3.3989 13 6 7.7075 -0.3289 3.1690 14 8 8.3097 -1.3209 2.8133 15 7 8.3813 0.7240 3.6728 16 6 9.7577 0.6311 3.8954 17 6 10.5540 1.7717 3.8150 18 6 11.9191 1.6907 4.0333 19 6 12.5047 0.4811 4.3330 20 6 11.7132 -0.6796 4.4177 21 6 12.3078 -1.9254 4.7246 22 1 11.9088 -2.8340 4.2983 23 6 13.4135 -1.9811 5.5806 24 7 13.8207 -0.8998 6.1942 25 14 14.3077 -3.5993 5.8473 26 1 14.8335 -4.0939 4.5495 27 1 15.4346 -3.3923 6.7919 28 1 13.3656 -4.5982 6.4127 29 6 10.3268 -0.5918 4.2008 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.1299 1.4425 0.0005 37 1 0.5437 -2.1340 1.3141 38 1 1.8738 -2.6042 0.4333 39 1 3.9336 0.3017 1.1592 40 1 3.9329 -1.3115 0.4071 41 1 3.7163 -2.3552 2.6459 42 1 3.7171 -0.7418 3.3981 43 1 6.5552 -3.1491 2.8361 44 1 5.6427 -3.0196 1.3133 45 1 7.1757 -2.1367 1.5101 46 1 7.9108 1.5463 3.8809 47 1 10.1040 2.7249 3.5801 48 1 12.5274 2.5807 3.9681 49 1 13.5697 0.4231 4.5029 50 1 14.5873 -0.9383 6.7873 51 1 9.7099 -1.4758 4.2682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415501423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:55 Heat of formation + Delta-G solvation = -69.512589 kcal Electronic energy + Delta-G solvation = -30194.244425 eV Core-core repulsion = 26092.383352 eV Total energy + Delta-G solvation = -4101.861072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12134 -40.35509 -39.10093 -38.79354 -37.16998 -36.06325 -34.79269 -33.29786 -31.76729 -31.63509 -30.29191 -28.23725 -27.83714 -27.25508 -26.72181 -24.80331 -23.21266 -22.77773 -22.03888 -20.96843 -20.67582 -19.56786 -18.75624 -17.99650 -17.51822 -17.25665 -17.09523 -16.80711 -16.48329 -16.23098 -15.92919 -15.56509 -15.41753 -15.11463 -14.93023 -14.80218 -14.63899 -14.13493 -14.01516 -13.96991 -13.66610 -13.51780 -13.36744 -13.11680 -13.03806 -12.97255 -12.87578 -12.81740 -12.68483 -12.39534 -12.20110 -12.19278 -11.90142 -11.85834 -11.61415 -11.51482 -11.46871 -11.23687 -10.93193 -10.33702 -9.93751 -9.46072 -9.34988 -8.78101 -8.53510 -6.39120 0.13342 0.95873 1.05288 1.28989 1.38753 1.50491 1.51826 2.10430 2.23702 2.44753 2.78880 3.24369 3.63933 3.68848 3.73105 3.92635 4.06157 4.08970 4.29347 4.33715 4.43682 4.50172 4.56668 4.58863 4.63547 4.68567 4.76794 4.80091 4.85260 4.93846 4.97839 5.04557 5.05416 5.09612 5.09957 5.10532 5.16518 5.22395 5.31019 5.35750 5.40439 5.44399 5.63589 5.78410 5.92656 6.03038 6.10652 6.28735 6.29470 6.30292 6.64749 6.67299 6.71041 6.90198 6.98285 7.01922 8.41532 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002018 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.203326 B =13875.114969 C =14931.658546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.149 4.149 4 C 0.107 3.893 5 H 0.074 0.926 6 N -0.844 5.844 7 C -0.122 4.122 8 C 0.122 3.878 9 N -0.578 5.578 10 C 0.076 3.924 11 C 0.511 3.489 12 O -0.539 6.539 13 C 0.492 3.508 14 O -0.514 6.514 15 N -0.630 5.630 16 C 0.147 3.853 17 C -0.240 4.240 18 C -0.093 4.093 19 C -0.181 4.181 20 C 0.089 3.911 21 C -0.502 4.502 22 H 0.067 0.933 23 C 0.032 3.968 24 N -0.837 5.837 25 Si 0.984 3.016 26 H -0.260 1.260 27 H -0.265 1.265 28 H -0.264 1.264 29 C -0.226 4.226 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.349 0.651 38 H 0.345 0.655 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.423 0.577 47 H 0.131 0.869 48 H 0.126 0.874 49 H 0.105 0.895 50 H 0.286 0.714 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 -0.339 -10.921 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.207 4.207 4 C -0.006 4.006 5 H 0.092 0.908 6 N -0.375 5.375 7 C -0.161 4.161 8 C 0.001 3.999 9 N -0.310 5.310 10 C -0.066 4.066 11 C 0.293 3.707 12 O -0.417 6.417 13 C 0.274 3.726 14 O -0.389 6.389 15 N -0.276 5.276 16 C 0.054 3.946 17 C -0.261 4.261 18 C -0.111 4.111 19 C -0.201 4.201 20 C 0.087 3.913 21 C -0.532 4.532 22 H 0.086 0.914 23 C -0.180 4.180 24 N -0.464 5.464 25 Si 0.805 3.195 26 H -0.185 1.185 27 H -0.190 1.190 28 H -0.189 1.189 29 C -0.247 4.247 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.149 0.851 48 H 0.144 0.856 49 H 0.123 0.877 50 H 0.097 0.903 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.633 -0.576 -10.130 24.803 hybrid contribution 0.027 0.148 -0.419 0.445 sum -22.606 -0.427 -10.548 24.950 Atomic orbital electron populations 1.21843 0.94227 1.02250 1.02151 1.21876 0.96718 0.96868 0.99055 1.21870 1.00826 0.96198 1.01842 1.21295 0.92990 0.89264 0.97016 0.90760 1.58924 1.17026 1.13139 1.48426 1.21960 0.95580 1.01115 0.97416 1.21734 0.75524 1.03919 0.98720 1.47890 1.08174 1.17270 1.57622 1.22251 0.97506 0.87123 0.99736 1.19825 0.87178 0.84268 0.79432 1.90717 1.69667 1.31553 1.49780 1.20553 0.89189 0.83836 0.79010 1.90757 1.70159 1.31714 1.46286 1.43073 1.07054 1.16683 1.60781 1.17563 0.81588 0.95129 1.00313 1.20507 0.93687 0.96759 1.15107 1.20851 0.94339 0.97134 0.98821 1.21374 0.99553 0.93055 1.06114 1.17842 0.90729 0.94341 0.88411 1.19679 1.12864 0.93856 1.26821 0.91433 1.26682 0.96205 1.01806 0.93354 1.69824 1.23019 1.31075 1.22471 0.85223 0.77854 0.77299 0.79107 1.18457 1.18963 1.18856 1.21146 0.94888 0.96231 1.12457 0.92647 0.92371 0.91721 0.91113 0.92383 0.92872 0.93221 0.83640 0.84119 0.92227 0.91019 0.87155 0.91227 0.92438 0.87976 0.90459 0.73887 0.85103 0.85622 0.87739 0.90319 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.86 71.98 0.64 -0.59 16 2 C -0.12 -1.33 2.66 -10.80 -0.03 -1.36 16 3 C -0.15 -1.98 8.85 71.98 0.64 -1.35 16 4 C 0.11 1.29 2.39 44.92 0.11 1.39 16 5 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 6 N -0.84 -7.75 8.57 -168.67 -1.45 -9.20 16 7 C -0.12 -1.95 4.97 30.59 0.15 -1.80 16 8 C 0.12 2.34 5.22 86.38 0.45 2.79 16 9 N -0.58 -14.28 2.87 -848.46 -2.44 -16.72 16 10 C 0.08 1.71 9.26 127.77 1.18 2.89 16 11 C 0.51 15.94 7.72 87.24 0.67 16.61 16 12 O -0.54 -17.82 16.12 -3.28 -0.05 -17.88 16 13 C 0.49 18.14 7.52 87.24 0.66 18.80 16 14 O -0.51 -21.28 10.72 -3.31 -0.04 -21.31 16 15 N -0.63 -23.64 5.33 -304.99 -1.63 -25.27 16 16 C 0.15 6.64 6.34 38.16 0.24 6.88 16 17 C -0.24 -10.11 9.96 22.59 0.22 -9.89 16 18 C -0.09 -4.19 10.01 22.20 0.22 -3.97 16 19 C -0.18 -9.62 8.63 22.75 0.20 -9.42 16 20 C 0.09 5.05 5.51 -21.31 -0.12 4.93 16 21 C -0.50 -28.45 9.05 23.47 0.21 -28.24 16 22 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 23 C 0.03 1.70 5.30 85.26 0.45 2.15 16 24 N -0.84 -44.85 10.92 21.82 0.24 -44.61 16 25 Si 0.98 39.90 29.56 68.60 2.03 41.93 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 29 C -0.23 -11.88 8.41 22.86 0.19 -11.68 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.39 6.77 -2.38 -0.02 0.37 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.05 0.78 6.32 -2.39 -0.02 0.76 16 37 H 0.35 2.41 7.39 -89.70 -0.66 1.75 16 38 H 0.35 2.53 9.00 -89.69 -0.81 1.72 16 39 H 0.06 1.19 6.17 -2.39 -0.01 1.18 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.78 7.68 -2.38 -0.02 1.77 16 42 H 0.07 1.54 7.51 -2.39 -0.02 1.52 16 43 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 44 H 0.10 1.55 8.02 -2.38 -0.02 1.53 16 45 H 0.08 2.13 5.86 -2.39 -0.01 2.12 16 46 H 0.42 13.51 8.28 -92.71 -0.77 12.75 16 47 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 48 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 49 H 0.10 5.78 6.40 -2.91 -0.02 5.76 16 50 H 0.29 13.92 8.30 -92.70 -0.77 13.15 16 51 H 0.10 5.35 6.13 -2.91 -0.02 5.33 16 Total: -1.00 -65.85 409.01 1.50 -64.35 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.26 Total: 40.55 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 6.09 Total: -11.84 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -5.27 Total: -95.80 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.09 Total: -39.19 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -65.85 1.50 -64.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415501423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.160 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds