Wall clock time and date at job start Wed Apr 1 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47250 * 239.99848 * 2 1 3 5 5 N 1.46899 * 109.47242 * 309.75531 * 4 2 1 6 6 C 1.47010 * 111.00195 * 295.59560 * 5 4 2 7 7 C 1.53095 * 109.25773 * 177.60355 * 6 5 4 8 8 O 1.43019 * 109.26020 * 56.84816 * 7 6 5 9 9 C 1.43009 * 113.73627 * 301.33077 * 8 7 6 10 10 C 1.47011 * 111.00309 * 171.95618 * 5 4 2 11 11 N 1.46500 * 109.47605 * 119.99684 * 2 1 3 12 12 C 1.34783 * 119.99688 * 304.09080 * 11 2 1 13 13 O 1.21575 * 120.00381 * 359.97438 * 12 11 2 14 14 N 1.34774 * 119.99672 * 179.97438 * 12 11 2 15 15 C 1.39244 * 120.00087 * 183.55242 * 14 12 11 16 16 C 1.39484 * 119.83114 * 324.13981 * 15 14 12 17 17 C 1.36378 * 120.16700 * 179.71737 * 16 15 14 18 18 C 1.40868 * 119.82488 * 0.54869 * 17 16 15 19 19 C 1.41163 * 120.16062 * 179.70124 * 18 17 16 20 20 H 1.07998 * 119.99877 * 214.41304 * 19 18 17 21 21 C 1.39890 * 119.99874 * 34.41070 * 19 18 17 22 22 N 1.30879 * 120.00165 * 356.60158 * 21 19 18 23 23 Si 1.86809 * 119.99747 * 176.59417 * 21 19 18 24 24 H 1.48497 * 109.46672 * 60.00480 * 23 21 19 25 25 H 1.48497 * 109.46908 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47156 * 300.00488 * 23 21 19 27 27 C 1.40863 * 119.67639 * 359.72590 * 18 17 16 28 28 C 1.36377 * 119.82963 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.46996 * 300.00157 * 1 2 3 30 30 H 1.08999 * 109.47153 * 59.99739 * 1 2 3 31 31 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47113 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47105 * 299.99437 * 3 2 1 34 34 H 1.08996 * 109.47580 * 59.99747 * 3 2 1 35 35 H 1.09002 * 109.47187 * 69.75904 * 4 2 1 36 36 H 1.09005 * 109.47325 * 189.75687 * 4 2 1 37 37 H 1.08998 * 109.50430 * 297.53680 * 6 5 4 38 38 H 1.08999 * 109.50567 * 57.67050 * 6 5 4 39 39 H 1.08999 * 109.50950 * 296.91389 * 7 6 5 40 40 H 1.09006 * 109.54292 * 176.80764 * 7 6 5 41 41 H 1.08999 * 109.50782 * 298.72642 * 9 8 7 42 42 H 1.09000 * 109.54140 * 178.62351 * 9 8 7 43 43 H 1.09004 * 109.50611 * 302.33109 * 10 5 4 44 44 H 1.08999 * 109.50606 * 62.41364 * 10 5 4 45 45 H 0.96991 * 120.00130 * 124.08373 * 11 2 1 46 46 H 0.97004 * 120.00330 * 3.83376 * 14 12 11 47 47 H 1.08003 * 119.91771 * 359.97438 * 16 15 14 48 48 H 1.07998 * 120.08532 * 180.27363 * 17 16 15 49 49 H 0.96996 * 119.99757 * 179.97438 * 22 21 19 50 50 H 1.08007 * 120.08883 * 179.97438 * 27 18 17 51 51 H 1.07992 * 119.91785 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.3682 -2.0218 -1.3723 6 6 1.7189 -2.9043 -0.2500 7 6 0.9527 -4.2227 -0.3860 8 8 1.2520 -4.8138 -1.6535 9 6 0.9224 -3.9816 -2.7688 10 6 1.6883 -2.6607 -2.6571 11 7 2.0184 -0.6905 1.1962 12 6 1.6263 -0.2800 2.4186 13 8 0.8676 0.6636 2.5286 14 7 2.0752 -0.9156 3.5190 15 6 1.6130 -0.5395 4.7775 16 6 1.3469 0.8030 5.0463 17 6 0.8884 1.1782 6.2747 18 6 0.6949 0.2073 7.2768 19 6 0.2267 0.5887 8.5528 20 1 0.5720 0.0666 9.4329 21 6 -0.6846 1.6427 8.6772 22 7 -1.0521 2.3185 7.6183 23 14 -1.3771 2.0856 10.3547 24 1 -0.2660 2.4626 11.2649 25 1 -2.3145 3.2290 10.2170 26 1 -2.1015 0.9168 10.9155 27 6 0.9714 -1.1458 6.9996 28 6 1.4234 -1.5066 5.7646 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.8259 -0.1168 -2.1306 36 1 3.1160 -0.8746 -1.1664 37 1 2.7905 -3.1029 -0.2644 38 1 1.4499 -2.4223 0.6898 39 1 -0.1180 -4.0303 -0.3179 40 1 1.2518 -4.9022 0.4122 41 1 -0.1492 -3.7821 -2.7701 42 1 1.1998 -4.4859 -3.6945 43 1 1.3969 -2.0007 -3.4742 44 1 2.7595 -2.8546 -2.7102 45 1 2.6239 -1.4431 1.1084 46 1 2.7234 -1.6323 3.4347 47 1 1.5003 1.5468 4.2784 48 1 0.6786 2.2176 6.4800 49 1 -1.6842 3.0491 7.7046 50 1 0.8257 -1.8957 7.7632 51 1 1.6362 -2.5435 5.5506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416845837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:03 Heat of formation + Delta-G solvation = -22.529847 kcal Electronic energy + Delta-G solvation = -31422.955565 eV Core-core repulsion = 27323.131818 eV Total energy + Delta-G solvation = -4099.823747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.74783 -39.56890 -37.96080 -36.79405 -34.81320 -34.15695 -33.03605 -31.78262 -31.21206 -29.43219 -28.69138 -28.26501 -27.11731 -25.06493 -24.52701 -24.29816 -21.93134 -21.17044 -20.82473 -20.01919 -19.57018 -17.93743 -17.23733 -16.91256 -16.51932 -16.36166 -15.70520 -15.40792 -15.30475 -15.11275 -14.80427 -14.63048 -14.37385 -14.08477 -13.87383 -13.22078 -13.14038 -12.88172 -12.75471 -12.58144 -12.30636 -12.10969 -11.87559 -11.86415 -11.71750 -11.63953 -11.59953 -11.38618 -11.16343 -11.05672 -11.04389 -10.88520 -10.83574 -10.43669 -10.00453 -9.84445 -9.81755 -9.41576 -9.00556 -8.78189 -8.69463 -8.65497 -7.45990 -6.82053 -6.54193 -4.27630 2.73050 3.02600 3.10452 3.13244 3.14880 3.21749 3.36612 3.59155 3.74535 4.02625 4.35950 4.59074 4.62420 4.65188 4.77831 4.81068 4.83978 4.94145 4.97705 5.12530 5.23232 5.33627 5.35692 5.38231 5.45347 5.55498 5.65427 5.69495 5.71998 5.87661 5.94422 6.17477 6.22392 6.34510 6.42387 6.52743 6.60199 6.66446 6.78100 6.83345 6.85777 6.92960 7.10141 7.20207 7.33682 7.43341 7.70145 7.88284 8.08317 8.14368 8.35273 8.51713 8.72968 8.98754 9.00034 9.16937 10.36843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002293 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.289331 B =12209.981959 C =12885.491607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.198 3.802 3 C -0.162 4.162 4 C 0.054 3.946 5 N -0.527 5.527 6 C -0.011 4.011 7 C 0.064 3.936 8 O -0.388 6.388 9 C 0.064 3.936 10 C 0.017 3.983 11 N -0.749 5.749 12 C 0.695 3.305 13 O -0.564 6.564 14 N -0.671 5.671 15 C 0.026 3.974 16 C -0.092 4.092 17 C -0.143 4.143 18 C 0.099 3.901 19 C -0.464 4.464 20 H 0.074 0.926 21 C 0.069 3.931 22 N -0.809 5.809 23 Si 0.914 3.086 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.204 4.204 28 C -0.116 4.116 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.389 0.611 46 H 0.388 0.612 47 H 0.107 0.893 48 H 0.129 0.871 49 H 0.278 0.722 50 H 0.095 0.905 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -8.030 -19.850 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.112 3.888 3 C -0.221 4.221 4 C -0.074 4.074 5 N -0.252 5.252 6 C -0.139 4.139 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.112 4.112 11 N -0.410 5.410 12 C 0.396 3.604 13 O -0.440 6.440 14 N -0.317 5.317 15 C -0.066 4.066 16 C -0.112 4.112 17 C -0.163 4.163 18 C 0.096 3.904 19 C -0.495 4.495 20 H 0.092 0.908 21 C -0.146 4.146 22 N -0.436 5.436 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.192 1.192 27 C -0.224 4.224 28 C -0.137 4.137 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.226 0.774 46 H 0.221 0.779 47 H 0.125 0.875 48 H 0.147 0.853 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.043 -7.053 -19.847 21.658 hybrid contribution 1.015 -0.430 0.498 1.210 sum 6.058 -7.483 -19.349 21.612 Atomic orbital electron populations 1.22135 0.93075 1.02941 1.03031 1.20103 0.95524 0.91305 0.81916 1.22218 1.00523 0.95577 1.03773 1.22449 0.95941 0.90378 0.98612 1.62212 1.58198 1.03043 1.01781 1.23502 0.98398 0.94732 0.97304 1.22686 0.99495 0.93402 0.85710 1.87980 1.85439 1.42790 1.14420 1.22633 0.99087 0.89936 0.89645 1.22791 0.98828 0.96850 0.92683 1.45927 1.53109 1.37179 1.04802 1.16032 0.81100 0.83237 0.80038 1.90874 1.39025 1.29134 1.85000 1.42175 1.45939 1.39050 1.04513 1.17053 1.12711 0.93504 0.83377 1.20633 1.00276 0.93421 0.96913 1.21285 1.01631 1.00676 0.92727 1.17705 0.88709 0.90310 0.93667 1.19427 1.22678 1.13761 0.93656 0.90791 1.25873 0.95932 0.94646 0.98152 1.69785 1.27024 1.16925 1.29820 0.86281 0.79156 0.78518 0.82128 1.19122 1.20469 1.19189 1.20663 1.09978 0.95975 0.95815 1.20044 1.03440 0.95700 0.94487 0.89799 0.92805 0.91869 0.93113 0.92074 0.89750 0.89023 0.94267 0.94184 0.86712 0.92088 0.88375 0.92212 0.88639 0.89613 0.94078 0.77359 0.77947 0.87481 0.85305 0.91098 0.88656 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.06 37.16 0.30 -1.72 16 2 C 0.20 2.24 0.67 -131.82 -0.09 2.15 16 3 C -0.16 -1.91 8.44 37.16 0.31 -1.59 16 4 C 0.05 0.47 4.23 -3.83 -0.02 0.45 16 5 N -0.53 -4.65 3.62 -234.32 -0.85 -5.50 16 6 C -0.01 -0.10 4.08 -3.72 -0.02 -0.11 16 7 C 0.06 0.59 7.01 37.21 0.26 0.85 16 8 O -0.39 -3.94 10.83 -35.23 -0.38 -4.32 16 9 C 0.06 0.50 7.01 37.21 0.26 0.76 16 10 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 11 N -0.75 -9.13 3.24 -52.42 -0.17 -9.30 16 12 C 0.69 11.82 7.81 -86.91 -0.68 11.14 16 13 O -0.56 -11.93 10.04 5.30 0.05 -11.87 16 14 N -0.67 -11.44 5.31 -14.10 -0.07 -11.51 16 15 C 0.03 0.57 6.29 -83.57 -0.53 0.05 16 16 C -0.09 -2.28 8.60 -39.79 -0.34 -2.62 16 17 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 19 C -0.46 -12.48 9.03 -37.85 -0.34 -12.83 16 20 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 21 C 0.07 1.79 5.41 -17.34 -0.09 1.70 16 22 N -0.81 -21.78 10.60 55.54 0.59 -21.19 16 23 Si 0.91 19.32 29.56 -169.99 -5.03 14.30 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 27 C -0.20 -4.94 9.74 -39.26 -0.38 -5.33 16 28 C -0.12 -2.52 9.90 -39.79 -0.39 -2.91 16 29 H 0.08 1.42 5.88 -51.93 -0.31 1.12 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.85 7.13 -51.93 -0.37 0.48 16 32 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.29 6.47 -51.93 -0.34 0.96 16 35 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.04 0.32 8.13 -51.93 -0.42 -0.10 16 37 H 0.04 0.34 8.07 -51.93 -0.42 -0.08 16 38 H 0.12 1.16 4.72 -51.93 -0.24 0.92 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 44 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.39 3.81 6.04 -40.82 -0.25 3.56 16 46 H 0.39 5.12 8.83 -40.82 -0.36 4.76 16 47 H 0.11 2.67 6.29 -52.48 -0.33 2.34 16 48 H 0.13 3.64 6.14 -52.49 -0.32 3.32 16 49 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 50 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 51 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -30.89 391.85 -10.62 -41.50 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -7.97 Total: 14.05 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.70 Total: -12.05 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.50 Total: -47.51 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.33 Total: -16.20 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.89 -10.62 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416845837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.975 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds