Wall clock time and date at job start Wed Apr 1 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47250 * 239.99848 * 2 1 3 5 5 N 1.46899 * 109.47242 * 309.75531 * 4 2 1 6 6 C 1.47010 * 111.00195 * 295.59560 * 5 4 2 7 7 C 1.53095 * 109.25773 * 177.60355 * 6 5 4 8 8 O 1.43019 * 109.26020 * 56.84816 * 7 6 5 9 9 C 1.43009 * 113.73627 * 301.33077 * 8 7 6 10 10 C 1.47011 * 111.00309 * 171.95618 * 5 4 2 11 11 N 1.46500 * 109.47605 * 119.99684 * 2 1 3 12 12 C 1.34783 * 119.99688 * 304.09080 * 11 2 1 13 13 O 1.21575 * 120.00381 * 359.97438 * 12 11 2 14 14 N 1.34774 * 119.99672 * 179.97438 * 12 11 2 15 15 C 1.39244 * 120.00087 * 183.55242 * 14 12 11 16 16 C 1.39484 * 119.83114 * 324.13981 * 15 14 12 17 17 C 1.36378 * 120.16700 * 179.71737 * 16 15 14 18 18 C 1.40868 * 119.82488 * 0.54869 * 17 16 15 19 19 C 1.41163 * 120.16062 * 179.70124 * 18 17 16 20 20 H 1.07998 * 119.99877 * 214.41304 * 19 18 17 21 21 C 1.39890 * 119.99874 * 34.41070 * 19 18 17 22 22 N 1.30879 * 120.00165 * 356.60158 * 21 19 18 23 23 Si 1.86809 * 119.99747 * 176.59417 * 21 19 18 24 24 H 1.48497 * 109.46672 * 60.00480 * 23 21 19 25 25 H 1.48497 * 109.46908 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47156 * 300.00488 * 23 21 19 27 27 C 1.40863 * 119.67639 * 359.72590 * 18 17 16 28 28 C 1.36377 * 119.82963 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.46996 * 300.00157 * 1 2 3 30 30 H 1.08999 * 109.47153 * 59.99739 * 1 2 3 31 31 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47113 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47105 * 299.99437 * 3 2 1 34 34 H 1.08996 * 109.47580 * 59.99747 * 3 2 1 35 35 H 1.09002 * 109.47187 * 69.75904 * 4 2 1 36 36 H 1.09005 * 109.47325 * 189.75687 * 4 2 1 37 37 H 1.08998 * 109.50430 * 297.53680 * 6 5 4 38 38 H 1.08999 * 109.50567 * 57.67050 * 6 5 4 39 39 H 1.08999 * 109.50950 * 296.91389 * 7 6 5 40 40 H 1.09006 * 109.54292 * 176.80764 * 7 6 5 41 41 H 1.08999 * 109.50782 * 298.72642 * 9 8 7 42 42 H 1.09000 * 109.54140 * 178.62351 * 9 8 7 43 43 H 1.09004 * 109.50611 * 302.33109 * 10 5 4 44 44 H 1.08999 * 109.50606 * 62.41364 * 10 5 4 45 45 H 0.96991 * 120.00130 * 124.08373 * 11 2 1 46 46 H 0.97004 * 120.00330 * 3.83376 * 14 12 11 47 47 H 1.08003 * 119.91771 * 359.97438 * 16 15 14 48 48 H 1.07998 * 120.08532 * 180.27363 * 17 16 15 49 49 H 0.96996 * 119.99757 * 179.97438 * 22 21 19 50 50 H 1.08007 * 120.08883 * 179.97438 * 27 18 17 51 51 H 1.07992 * 119.91785 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.3682 -2.0218 -1.3723 6 6 1.7189 -2.9043 -0.2500 7 6 0.9527 -4.2227 -0.3860 8 8 1.2520 -4.8138 -1.6535 9 6 0.9224 -3.9816 -2.7688 10 6 1.6883 -2.6607 -2.6571 11 7 2.0184 -0.6905 1.1962 12 6 1.6263 -0.2800 2.4186 13 8 0.8676 0.6636 2.5286 14 7 2.0752 -0.9156 3.5190 15 6 1.6130 -0.5395 4.7775 16 6 1.3469 0.8030 5.0463 17 6 0.8884 1.1782 6.2747 18 6 0.6949 0.2073 7.2768 19 6 0.2267 0.5887 8.5528 20 1 0.5720 0.0666 9.4329 21 6 -0.6846 1.6427 8.6772 22 7 -1.0521 2.3185 7.6183 23 14 -1.3771 2.0856 10.3547 24 1 -0.2660 2.4626 11.2649 25 1 -2.3145 3.2290 10.2170 26 1 -2.1015 0.9168 10.9155 27 6 0.9714 -1.1458 6.9996 28 6 1.4234 -1.5066 5.7646 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.8259 -0.1168 -2.1306 36 1 3.1160 -0.8746 -1.1664 37 1 2.7905 -3.1029 -0.2644 38 1 1.4499 -2.4223 0.6898 39 1 -0.1180 -4.0303 -0.3179 40 1 1.2518 -4.9022 0.4122 41 1 -0.1492 -3.7821 -2.7701 42 1 1.1998 -4.4859 -3.6945 43 1 1.3969 -2.0007 -3.4742 44 1 2.7595 -2.8546 -2.7102 45 1 2.6239 -1.4431 1.1084 46 1 2.7234 -1.6323 3.4347 47 1 1.5003 1.5468 4.2784 48 1 0.6786 2.2176 6.4800 49 1 -1.6842 3.0491 7.7046 50 1 0.8257 -1.8957 7.7632 51 1 1.6362 -2.5435 5.5506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416845837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:02 Heat of formation + Delta-G solvation = -42.696222 kcal Electronic energy + Delta-G solvation = -31423.830045 eV Core-core repulsion = 27323.131818 eV Total energy + Delta-G solvation = -4100.698227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87196 -40.57144 -39.41724 -38.06936 -36.16486 -35.39242 -34.76216 -32.88876 -32.02040 -31.34631 -30.45326 -29.03404 -28.14473 -26.77728 -25.42586 -24.98311 -23.45365 -22.97507 -21.83896 -21.28499 -20.71969 -19.28154 -19.16667 -18.09415 -17.51509 -17.06330 -17.01209 -16.68068 -16.29104 -16.06303 -15.95255 -15.72630 -15.59301 -15.38929 -15.08939 -14.79875 -14.50527 -14.16867 -13.96072 -13.76370 -13.56568 -13.51379 -13.25976 -13.04022 -12.92686 -12.78505 -12.75966 -12.63089 -12.40969 -12.29689 -12.27151 -12.12751 -11.97918 -11.68255 -11.63324 -11.53357 -11.14704 -10.79826 -10.62075 -10.38188 -9.88801 -9.39157 -9.34657 -8.66318 -8.46015 -6.28361 0.91645 1.18100 1.39283 1.49973 1.52469 1.79531 2.24340 2.29664 2.71391 2.86724 2.97458 3.33252 3.66780 3.74675 3.95115 3.97652 4.07133 4.15430 4.19304 4.28675 4.37163 4.47630 4.52658 4.54804 4.64594 4.69934 4.75039 4.76799 4.80212 4.84031 4.91430 4.97712 5.03040 5.04653 5.10846 5.15807 5.21123 5.32203 5.40199 5.47720 5.51996 5.68627 5.75251 5.84684 5.93492 5.97982 6.13405 6.18770 6.19371 6.25084 6.42452 6.75930 7.00191 7.07789 7.19789 7.76594 8.46677 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002293 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.289331 B =12209.981959 C =12885.491607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.197 3.803 3 C -0.158 4.158 4 C 0.064 3.936 5 N -0.539 5.539 6 C -0.007 4.007 7 C 0.063 3.937 8 O -0.405 6.405 9 C 0.059 3.941 10 C 0.020 3.980 11 N -0.726 5.726 12 C 0.692 3.308 13 O -0.607 6.607 14 N -0.662 5.662 15 C 0.047 3.953 16 C -0.106 4.106 17 C -0.167 4.167 18 C 0.063 3.937 19 C -0.498 4.498 20 H 0.078 0.922 21 C 0.021 3.979 22 N -0.848 5.848 23 Si 0.989 3.011 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.260 1.260 27 C -0.210 4.210 28 C -0.110 4.110 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.045 0.955 45 H 0.406 0.594 46 H 0.412 0.588 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.281 0.719 50 H 0.111 0.889 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -10.057 -21.682 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.111 3.889 3 C -0.217 4.217 4 C -0.064 4.064 5 N -0.265 5.265 6 C -0.135 4.135 7 C -0.014 4.014 8 O -0.324 6.324 9 C -0.018 4.018 10 C -0.107 4.107 11 N -0.387 5.387 12 C 0.394 3.606 13 O -0.486 6.486 14 N -0.311 5.311 15 C -0.048 4.048 16 C -0.126 4.126 17 C -0.187 4.187 18 C 0.061 3.939 19 C -0.529 4.529 20 H 0.096 0.904 21 C -0.190 4.190 22 N -0.476 5.476 23 Si 0.810 3.190 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.184 1.184 27 C -0.229 4.229 28 C -0.131 4.131 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.063 0.937 45 H 0.246 0.754 46 H 0.248 0.752 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.091 0.909 50 H 0.129 0.871 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.358 -9.135 -21.739 24.422 hybrid contribution 0.670 0.117 0.833 1.075 sum 7.028 -9.018 -20.906 23.828 Atomic orbital electron populations 1.22006 0.94574 1.02124 1.01652 1.20237 0.94366 0.91677 0.82649 1.22153 1.01221 0.95545 1.02789 1.22365 0.96476 0.90234 0.97286 1.62181 1.58667 1.03187 1.02426 1.23387 0.98863 0.94464 0.96800 1.22703 0.98887 0.93834 0.85967 1.87959 1.85556 1.43795 1.15072 1.22815 0.99003 0.90287 0.89681 1.22817 0.98939 0.96748 0.92236 1.45756 1.52398 1.37137 1.03367 1.16224 0.80723 0.82568 0.81133 1.90884 1.40874 1.31048 1.85769 1.41946 1.46483 1.39700 1.02963 1.17067 1.10158 0.92315 0.85228 1.20632 1.01072 0.94990 0.95906 1.21144 1.03665 0.99792 0.94131 1.18038 0.90122 0.91687 0.94081 1.19718 1.24005 1.15206 0.93955 0.90364 1.26825 0.95825 0.94105 1.02198 1.69916 1.27902 1.17662 1.32153 0.85151 0.78524 0.78377 0.76960 1.18194 1.19871 1.18412 1.20929 1.09518 0.95144 0.97353 1.20398 1.01757 0.97749 0.93152 0.94121 0.91180 0.92272 0.91858 0.89897 0.93920 0.87063 0.92826 0.93166 0.88079 0.93253 0.87481 0.92699 0.86739 0.87845 0.93711 0.75409 0.75180 0.88574 0.87977 0.90883 0.87122 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.06 71.98 0.58 -3.17 16 2 C 0.20 4.10 0.67 3.60 0.00 4.10 16 3 C -0.16 -3.53 8.44 71.98 0.61 -2.92 16 4 C 0.06 0.88 4.23 86.30 0.37 1.24 16 5 N -0.54 -7.88 3.62 -895.25 -3.24 -11.12 16 6 C -0.01 -0.10 4.08 86.31 0.35 0.25 16 7 C 0.06 1.05 7.01 72.01 0.50 1.55 16 8 O -0.40 -7.37 10.83 -148.98 -1.61 -8.98 16 9 C 0.06 0.76 7.01 72.01 0.50 1.26 16 10 C 0.02 0.23 5.65 86.31 0.49 0.72 16 11 N -0.73 -16.45 3.24 -438.02 -1.42 -17.87 16 12 C 0.69 23.24 7.81 179.05 1.40 24.64 16 13 O -0.61 -26.56 10.04 -3.95 -0.04 -26.60 16 14 N -0.66 -21.60 5.31 -316.79 -1.68 -23.28 16 15 C 0.05 2.01 6.29 38.56 0.24 2.25 16 16 C -0.11 -5.44 8.60 22.14 0.19 -5.25 16 17 C -0.17 -9.52 8.61 22.48 0.19 -9.32 16 18 C 0.06 3.52 5.55 -21.28 -0.12 3.40 16 19 C -0.50 -27.72 9.03 23.39 0.21 -27.51 16 20 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 21 C 0.02 1.15 5.41 85.23 0.46 1.61 16 22 N -0.85 -48.12 10.60 21.82 0.23 -47.89 16 23 Si 0.99 40.51 29.56 68.60 2.03 42.53 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 C -0.21 -10.10 9.74 22.48 0.22 -9.88 16 28 C -0.11 -4.59 9.90 22.14 0.22 -4.37 16 29 H 0.04 1.42 5.88 -2.39 -0.01 1.41 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.55 7.13 -2.39 -0.02 1.53 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.34 6.47 -2.39 -0.02 1.32 16 35 H 0.11 1.16 8.05 -2.39 -0.02 1.14 16 36 H 0.05 0.63 8.13 -2.38 -0.02 0.61 16 37 H 0.05 0.68 8.07 -2.39 -0.02 0.66 16 38 H 0.10 1.81 4.72 -2.39 -0.01 1.80 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 0.82 8.10 -2.38 -0.02 0.80 16 44 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.41 6.74 6.04 -92.71 -0.56 6.18 16 46 H 0.41 9.61 8.83 -92.70 -0.82 8.79 16 47 H 0.10 5.09 6.29 -2.91 -0.02 5.07 16 48 H 0.10 6.26 6.14 -2.91 -0.02 6.24 16 49 H 0.28 14.68 8.30 -92.71 -0.77 13.91 16 50 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 51 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -72.36 391.85 0.27 -72.09 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -0.42 Total: 42.49 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 6.42 Total: -21.39 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -6.11 Total: -100.15 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.65 Total: -35.58 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -72.36 0.27 -72.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416845837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.396 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds