Wall clock time and date at job start Wed Apr 1 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46812 * 2 1 4 4 C 1.52993 * 109.47004 * 119.99956 * 2 1 3 5 5 H 1.09003 * 109.47421 * 299.99702 * 4 2 1 6 6 N 1.46903 * 109.47015 * 60.00311 * 4 2 1 7 7 C 1.53001 * 109.47004 * 179.97438 * 4 2 1 8 8 N 1.46497 * 109.47247 * 185.00232 * 7 4 2 9 9 C 1.34778 * 120.00107 * 180.02562 * 8 7 4 10 10 O 1.21351 * 120.00058 * 359.97438 * 9 8 7 11 11 C 1.49455 * 120.00028 * 179.97438 * 9 8 7 12 12 O 1.21348 * 120.00075 * 0.02562 * 11 9 8 13 13 N 1.34773 * 119.99674 * 179.97438 * 11 9 8 14 14 C 1.46508 * 119.99580 * 175.06004 * 13 11 9 15 15 H 1.08992 * 109.47314 * 38.58840 * 14 13 11 16 16 C 1.52999 * 109.47021 * 158.58976 * 14 13 11 17 17 C 1.50700 * 109.47306 * 294.53014 * 16 14 13 18 18 H 1.08003 * 119.99987 * 354.98177 * 17 16 14 19 19 C 1.37875 * 120.00207 * 174.98774 * 17 16 14 20 20 N 1.31510 * 119.99994 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46979 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47221 * 119.99830 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00182 * 21 19 17 25 25 C 1.50696 * 109.46720 * 278.58571 * 14 13 11 26 26 C 1.38232 * 120.00365 * 319.73213 * 25 14 13 27 27 C 1.38235 * 119.99970 * 179.81355 * 26 25 14 28 28 C 1.38242 * 119.99893 * 0.38837 * 27 26 25 29 29 C 1.38228 * 119.99746 * 359.86382 * 28 27 26 30 30 C 1.38226 * 120.00507 * 359.95348 * 29 28 27 31 31 H 1.08999 * 109.47503 * 300.00071 * 1 2 3 32 32 H 1.09003 * 109.47220 * 59.99841 * 1 2 3 33 33 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47142 * 240.00553 * 2 1 3 35 35 H 1.09003 * 109.47407 * 60.00424 * 3 2 1 36 36 H 1.09004 * 109.46852 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.47357 * 300.00075 * 3 2 1 38 38 H 1.00902 * 111.00075 * 59.99851 * 6 4 2 39 39 H 1.00906 * 110.99822 * 183.95226 * 6 4 2 40 40 H 1.09000 * 109.47313 * 305.00569 * 7 4 2 41 41 H 1.09003 * 109.47073 * 64.99997 * 7 4 2 42 42 H 0.97003 * 119.99906 * 359.97438 * 8 7 4 43 43 H 0.96997 * 120.00696 * 355.05484 * 13 11 9 44 44 H 1.09010 * 109.47113 * 54.52585 * 16 14 13 45 45 H 1.08995 * 109.47382 * 174.52814 * 16 14 13 46 46 H 0.97003 * 120.00266 * 180.02562 * 20 19 17 47 47 H 1.07999 * 120.00074 * 359.97438 * 26 25 14 48 48 H 1.08003 * 120.00391 * 180.23087 * 27 26 25 49 49 H 1.08000 * 119.99736 * 179.84069 * 28 27 26 50 50 H 1.08002 * 119.99601 * 179.97438 * 29 28 27 51 51 H 1.07999 * 120.00323 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 1.5503 -2.1062 1.2491 7 6 3.5700 -0.7218 1.2489 8 7 4.0583 -1.5140 2.3803 9 6 5.3833 -1.6553 2.5820 10 8 6.1720 -1.1267 1.8263 11 6 5.8815 -2.4631 3.7366 12 8 5.0929 -2.9922 4.4921 13 7 7.2065 -2.6048 3.9380 14 6 7.6958 -3.3044 5.1286 15 1 7.0497 -4.1562 5.3406 16 6 9.1232 -3.7962 4.8807 17 6 9.1133 -4.8396 3.7933 18 1 8.1752 -5.1824 3.3824 19 6 10.3018 -5.3566 3.3231 20 7 11.4442 -4.9389 3.8232 21 14 10.2895 -6.6504 1.9758 22 1 8.8872 -6.9473 1.5875 23 1 11.0337 -6.1428 0.7952 24 1 10.9377 -7.8902 2.4740 25 6 7.6864 -2.3619 6.3044 26 6 8.0795 -1.0469 6.1393 27 6 8.0671 -0.1814 7.2171 28 6 7.6693 -0.6329 8.4617 29 6 7.2812 -1.9491 8.6278 30 6 7.2899 -2.8137 7.5493 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.8739 -2.6041 0.4333 39 1 1.8198 -2.5851 2.0955 40 1 3.9330 -1.1563 0.3175 41 1 3.9337 0.3019 1.3382 42 1 3.4279 -1.9363 2.9846 43 1 7.8363 -2.2436 3.2947 44 1 9.7483 -2.9575 4.5737 45 1 9.5223 -4.2305 5.7972 46 1 12.2804 -5.3024 3.4922 47 1 8.3937 -0.6952 5.1678 48 1 8.3707 0.8470 7.0874 49 1 7.6622 0.0427 9.3042 50 1 6.9708 -2.3019 9.6002 51 1 6.9863 -3.8420 7.6790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419473576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:40 Heat of formation + Delta-G solvation = -65.379988 kcal Electronic energy + Delta-G solvation = -30539.086874 eV Core-core repulsion = 26437.405005 eV Total energy + Delta-G solvation = -4101.681869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54368 -39.29063 -38.42034 -37.71979 -35.53308 -34.48611 -32.78622 -32.26825 -31.19156 -30.51397 -28.94579 -28.61643 -26.93356 -25.47990 -24.20346 -22.53380 -22.31444 -21.98949 -20.80010 -20.12865 -19.76899 -18.33269 -16.94290 -16.71209 -16.30654 -16.19626 -15.80026 -15.61558 -15.33762 -15.15125 -14.86528 -14.55952 -14.31466 -14.19561 -13.95659 -13.59355 -13.37307 -13.12808 -13.03482 -12.78718 -12.66951 -12.56208 -12.42106 -12.15677 -11.98874 -11.66614 -11.45274 -11.27772 -11.24153 -11.18160 -11.00659 -10.94108 -10.77635 -10.63972 -10.53036 -9.82579 -9.43822 -9.38520 -9.29767 -9.08800 -8.68663 -8.56817 -8.49064 -8.26151 -6.12299 -4.16323 1.64442 1.71105 1.74602 2.53677 3.25456 3.33800 3.37769 3.47825 3.83495 4.11052 4.17488 4.30616 4.37671 4.58036 4.69095 4.80386 4.93669 5.01751 5.20468 5.22293 5.24497 5.24843 5.31390 5.36233 5.44742 5.47570 5.50143 5.58739 5.68612 5.78466 5.84303 5.87108 6.00417 6.05154 6.06358 6.12734 6.26857 6.35538 6.47523 6.65420 6.73822 6.78556 6.79959 6.97442 7.03614 7.06121 7.33881 7.43823 7.48646 7.71353 7.83350 7.98775 8.19792 8.38028 8.89041 9.49265 10.98141 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.003068 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.897866 B = 9123.352540 C =11636.804205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.154 4.154 4 C 0.084 3.916 5 H 0.089 0.911 6 N -0.838 5.838 7 C 0.079 3.921 8 N -0.709 5.709 9 C 0.508 3.492 10 O -0.515 6.515 11 C 0.502 3.498 12 O -0.533 6.533 13 N -0.664 5.664 14 C 0.183 3.817 15 H 0.091 0.909 16 C 0.022 3.978 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.076 4.076 26 C -0.108 4.108 27 C -0.124 4.124 28 C -0.132 4.132 29 C -0.123 4.123 30 C -0.106 4.106 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.343 0.657 39 H 0.343 0.657 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.408 0.592 43 H 0.415 0.585 44 H 0.031 0.969 45 H 0.036 0.964 46 H 0.262 0.738 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.117 0.883 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 11.394 -1.297 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.212 4.212 4 C -0.028 4.028 5 H 0.107 0.893 6 N -0.368 5.368 7 C -0.047 4.047 8 N -0.365 5.365 9 C 0.289 3.711 10 O -0.390 6.390 11 C 0.282 3.718 12 O -0.410 6.410 13 N -0.314 5.314 14 C 0.079 3.921 15 H 0.109 0.891 16 C -0.015 4.015 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.077 4.077 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.151 4.151 29 C -0.141 4.141 30 C -0.124 4.124 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.245 0.755 43 H 0.251 0.749 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.692 11.695 -1.342 21.250 hybrid contribution 1.299 -0.965 -0.715 1.769 sum -16.392 10.731 -2.058 19.700 Atomic orbital electron populations 1.21703 0.94052 1.02703 1.00995 1.21048 0.96933 0.95739 0.96660 1.21942 1.01407 0.95670 1.02178 1.21799 0.89949 0.90980 1.00057 0.89280 1.58952 1.66703 1.02974 1.08182 1.22405 0.96210 0.96831 0.89242 1.45726 1.06968 1.53078 1.30684 1.20484 0.82995 0.81627 0.85964 1.90766 1.55147 1.46866 1.46180 1.19912 0.84329 0.82152 0.85417 1.90712 1.55335 1.47772 1.47223 1.45866 1.05547 1.54792 1.25200 1.20412 1.00350 0.91428 0.79866 0.89146 1.19427 0.87018 0.96958 0.98084 1.21147 0.92663 1.22353 1.20005 0.92362 1.24979 0.95545 0.96763 0.96757 1.69961 0.97406 1.43057 1.42433 0.86527 0.78170 0.81492 0.81798 1.19735 1.20930 1.20936 1.20476 0.96836 0.94803 0.95618 1.20971 0.99383 0.93380 0.98870 1.21061 1.00666 0.99358 0.93134 1.21022 1.00990 0.95957 0.97087 1.21044 1.00718 0.93871 0.98464 1.21005 0.99336 0.99792 0.92316 0.92988 0.93281 0.91325 0.91038 0.92414 0.92217 0.92277 0.84393 0.84365 0.90977 0.90378 0.75505 0.74854 0.95064 0.94623 0.92833 0.86397 0.86612 0.86733 0.86484 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.04 37.16 0.34 -0.58 16 2 C -0.08 -0.57 2.66 -90.62 -0.24 -0.81 16 3 C -0.15 -0.99 8.84 37.16 0.33 -0.66 16 4 C 0.08 0.63 2.57 -67.71 -0.17 0.45 16 5 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 6 N -0.84 -6.16 8.41 -4.67 -0.04 -6.20 16 7 C 0.08 0.75 4.83 -4.04 -0.02 0.73 16 8 N -0.71 -8.25 5.34 -60.73 -0.32 -8.57 16 9 C 0.51 7.93 7.89 -11.58 -0.09 7.84 16 10 O -0.52 -9.14 16.48 5.50 0.09 -9.05 16 11 C 0.50 8.87 7.79 -11.58 -0.09 8.78 16 12 O -0.53 -10.04 16.17 5.50 0.09 -9.95 16 13 N -0.66 -12.44 4.08 -55.36 -0.23 -12.66 16 14 C 0.18 3.66 2.11 -69.08 -0.15 3.52 16 15 H 0.09 1.91 7.49 -51.93 -0.39 1.52 16 16 C 0.02 0.53 4.47 -27.88 -0.12 0.41 16 17 C -0.52 -13.82 8.85 -34.44 -0.30 -14.13 16 18 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.08 -1.39 4.86 -104.62 -0.51 -1.89 16 26 C -0.11 -1.83 9.32 -39.58 -0.37 -2.19 16 27 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 28 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 29 C -0.12 -1.78 10.05 -39.59 -0.40 -2.17 16 30 C -0.11 -1.77 9.67 -39.58 -0.38 -2.15 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.34 2.42 9.00 -39.29 -0.35 2.07 16 39 H 0.34 2.54 7.53 -39.29 -0.30 2.25 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.78 6.71 -51.93 -0.35 0.43 16 42 H 0.41 4.29 6.63 -40.82 -0.27 4.02 16 43 H 0.41 7.84 8.05 -40.82 -0.33 7.51 16 44 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.12 1.95 7.73 -52.49 -0.41 1.55 16 48 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 49 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 50 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 51 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 LS Contribution 421.95 15.07 6.36 6.36 Total: -1.00 -30.53 421.95 -9.58 -40.11 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -8.16 Total: 14.34 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.08 Total: -5.74 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.15 Total: -52.17 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -30.53 -9.58 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419473576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.272 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds