Wall clock time and date at job start Wed Apr 1 2020 05:27:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.46700 * 2 1
4 4 C 1.53003 * 109.47099 * 119.99741 * 2 1 3
5 5 H 1.09003 * 109.46550 * 185.00053 * 4 2 1
6 6 N 1.46898 * 109.46995 * 305.00166 * 4 2 1
7 7 C 1.53004 * 109.46929 * 65.00285 * 4 2 1
8 8 N 1.46500 * 109.46905 * 184.99810 * 7 4 2
9 9 C 1.34776 * 119.99817 * 180.02562 * 8 7 4
10 10 O 1.21348 * 119.99888 * 359.97438 * 9 8 7
11 11 C 1.49450 * 119.99988 * 179.97438 * 9 8 7
12 12 O 1.21349 * 119.99680 * 0.02562 * 11 9 8
13 13 N 1.34780 * 119.99967 * 179.97438 * 11 9 8
14 14 C 1.46498 * 119.99696 * 174.98147 * 13 11 9
15 15 H 1.08995 * 109.47551 * 326.45440 * 14 13 11
16 16 C 1.52997 * 109.47142 * 206.45125 * 14 13 11
17 17 C 1.50703 * 109.47172 * 65.33141 * 16 14 13
18 18 H 1.08000 * 119.99379 * 355.13568 * 17 16 14
19 19 C 1.37875 * 119.99862 * 175.13315 * 17 16 14
20 20 N 1.31514 * 120.00181 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 119.99551 * 180.02562 * 19 17 16
22 22 H 1.48504 * 109.46876 * 90.00336 * 21 19 17
23 23 H 1.48498 * 109.46901 * 210.00087 * 21 19 17
24 24 H 1.48495 * 109.47335 * 329.99985 * 21 19 17
25 25 C 1.50706 * 109.46905 * 86.45327 * 14 13 11
26 26 C 1.38239 * 119.99821 * 39.72379 * 25 14 13
27 27 C 1.38230 * 119.99966 * 179.78894 * 26 25 14
28 28 C 1.38242 * 119.99934 * 0.43949 * 27 26 25
29 29 C 1.38236 * 119.99595 * 359.81704 * 28 27 26
30 30 C 1.38228 * 119.99958 * 220.00121 * 25 14 13
31 31 H 1.08997 * 109.47009 * 60.00285 * 1 2 3
32 32 H 1.09000 * 109.46595 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47030 * 299.99700 * 1 2 3
34 34 H 1.08996 * 109.47030 * 240.00300 * 2 1 3
35 35 H 1.09007 * 109.46982 * 180.02562 * 3 2 1
36 36 H 1.08997 * 109.47157 * 299.99625 * 3 2 1
37 37 H 1.08996 * 109.47134 * 60.00364 * 3 2 1
38 38 H 1.00898 * 110.99614 * 60.00429 * 6 4 2
39 39 H 1.00902 * 110.99448 * 183.95595 * 6 4 2
40 40 H 1.08998 * 109.47057 * 305.00364 * 7 4 2
41 41 H 1.09000 * 109.46925 * 64.99582 * 7 4 2
42 42 H 0.97000 * 119.99754 * 0.02562 * 8 7 4
43 43 H 0.96993 * 119.99868 * 354.98756 * 13 11 9
44 44 H 1.08996 * 109.47080 * 185.33542 * 16 14 13
45 45 H 1.09005 * 109.47176 * 305.33556 * 16 14 13
46 46 H 0.96996 * 119.99788 * 179.97438 * 20 19 17
47 47 H 1.08005 * 119.99912 * 359.97438 * 26 25 14
48 48 H 1.07999 * 120.00263 * 180.27576 * 27 26 25
49 49 H 1.07994 * 120.00093 * 179.83127 * 28 27 26
50 50 H 1.08003 * 119.99546 * 180.02562 * 29 28 27
51 51 H 1.08003 * 120.00270 * 359.97189 * 30 25 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 3.1264 -0.6442 1.2951
6 7 1.4543 -0.1019 2.4456
7 6 1.6353 -2.1955 1.1880
8 7 2.0185 -2.8593 2.4365
9 6 1.7598 -4.1707 2.6093
10 8 1.2091 -4.8014 1.7309
11 6 2.1511 -4.8481 3.8827
12 8 2.7014 -4.2172 4.7612
13 7 1.8920 -6.1593 4.0557
14 6 2.3724 -6.8488 5.2557
15 1 3.3268 -6.4213 5.5629
16 6 2.5548 -8.3368 4.9504
17 6 3.6531 -8.5099 3.9331
18 1 4.1156 -7.6429 3.4850
19 6 4.0675 -9.7751 3.5745
20 7 3.5040 -10.8309 4.1199
21 14 5.4294 -9.9896 2.3141
22 1 6.7430 -10.0251 3.0059
23 1 5.2244 -11.2614 1.5754
24 1 5.4035 -8.8528 1.3590
25 6 1.3672 -6.6834 6.3664
26 6 0.0144 -6.7518 6.0901
27 6 -0.9075 -6.6045 7.1094
28 6 -0.4768 -6.3798 8.4037
29 6 0.8758 -6.3062 8.6790
30 6 1.7978 -6.4578 7.6603
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 3.1300 1.4426 -0.0005
36 1 1.6766 1.9563 -0.8900
37 1 1.6766 1.9563 0.8900
38 1 0.4472 -0.1605 2.4267
39 1 1.8250 -0.5182 3.2866
40 1 0.5564 -2.2707 1.0527
41 1 2.1409 -2.6765 0.3507
42 1 2.4583 -2.3550 3.1387
43 1 1.3875 -6.6465 3.3857
44 1 2.8206 -8.8656 5.8656
45 1 1.6245 -8.7430 4.5532
46 1 3.7953 -11.7209 3.8673
47 1 -0.3221 -6.9232 5.0782
48 1 -1.9642 -6.6623 6.8944
49 1 -1.1971 -6.2620 9.1997
50 1 1.2123 -6.1310 9.6903
51 1 2.8547 -6.4004 7.8755
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000419473578.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:47
Heat of formation + Delta-G solvation = -62.743521 kcal
Electronic energy + Delta-G solvation = -30549.486551 eV
Core-core repulsion = 26447.919008 eV
Total energy + Delta-G solvation = -4101.567543 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.54700 -39.30788 -38.49007 -37.76476 -35.54003 -34.47214 -32.77392 -31.91138
-31.19449 -30.51476 -28.92001 -28.45354 -27.46788 -25.55887 -24.30436 -22.60530
-22.31923 -21.97766 -20.58012 -19.91606 -19.59865 -18.33325 -17.06299 -16.91774
-16.52316 -16.18696 -15.81182 -15.69464 -15.23746 -14.96078 -14.66943 -14.55051
-14.33526 -14.15011 -14.04054 -13.63171 -13.47939 -13.11142 -13.07237 -12.88914
-12.67528 -12.55627 -12.29177 -12.14919 -12.05560 -11.67962 -11.46429 -11.26251
-11.14605 -11.06484 -10.99998 -10.98707 -10.76434 -10.65213 -10.48636 -9.86671
-9.43058 -9.36148 -9.30484 -9.09406 -8.68394 -8.56922 -8.48212 -8.25830
-6.11257 -4.15195 1.65325 1.70997 1.74824 2.53795 3.27292 3.34123
3.37953 3.47980 3.83414 4.16614 4.19756 4.32913 4.38675 4.55403
4.65476 4.79987 4.83690 5.05467 5.20732 5.21895 5.25900 5.27213
5.31011 5.38837 5.43009 5.47176 5.50349 5.63298 5.65234 5.78288
5.84044 5.86995 5.98690 6.04348 6.09433 6.12690 6.27529 6.35552
6.47233 6.64436 6.74441 6.78807 6.80002 6.97339 7.03332 7.06584
7.33997 7.43352 7.49773 7.70978 7.84136 7.98242 8.20556 8.36957
8.89768 9.50309 10.99238
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008041 B = 0.003081 C = 0.002378
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3481.110674 B = 9085.907791 C =11772.297743
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.085 4.085
3 C -0.139 4.139
4 C 0.084 3.916
5 H 0.090 0.910
6 N -0.837 5.837
7 C 0.078 3.922
8 N -0.709 5.709
9 C 0.508 3.492
10 O -0.514 6.514
11 C 0.503 3.497
12 O -0.532 6.532
13 N -0.665 5.665
14 C 0.183 3.817
15 H 0.092 0.908
16 C 0.023 3.977
17 C -0.524 4.524
18 H 0.057 0.943
19 C 0.062 3.938
20 N -0.891 5.891
21 Si 0.892 3.108
22 H -0.280 1.280
23 H -0.286 1.286
24 H -0.274 1.274
25 C -0.074 4.074
26 C -0.109 4.109
27 C -0.124 4.124
28 C -0.133 4.133
29 C -0.122 4.122
30 C -0.106 4.106
31 H 0.057 0.943
32 H 0.056 0.944
33 H 0.062 0.938
34 H 0.074 0.926
35 H 0.051 0.949
36 H 0.049 0.951
37 H 0.067 0.933
38 H 0.343 0.657
39 H 0.341 0.659
40 H 0.075 0.925
41 H 0.076 0.924
42 H 0.408 0.592
43 H 0.413 0.587
44 H 0.042 0.958
45 H 0.024 0.976
46 H 0.262 0.738
47 H 0.117 0.883
48 H 0.116 0.884
49 H 0.114 0.886
50 H 0.117 0.883
51 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.364 19.434 -1.554 20.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.104 4.104
3 C -0.196 4.196
4 C -0.028 4.028
5 H 0.108 0.892
6 N -0.369 5.369
7 C -0.048 4.048
8 N -0.364 5.364
9 C 0.289 3.711
10 O -0.389 6.389
11 C 0.282 3.718
12 O -0.410 6.410
13 N -0.315 5.315
14 C 0.080 3.920
15 H 0.110 0.890
16 C -0.014 4.014
17 C -0.562 4.562
18 H 0.075 0.925
19 C -0.140 4.140
20 N -0.529 5.529
21 Si 0.720 3.280
22 H -0.206 1.206
23 H -0.211 1.211
24 H -0.198 1.198
25 C -0.075 4.075
26 C -0.127 4.127
27 C -0.142 4.142
28 C -0.151 4.151
29 C -0.140 4.140
30 C -0.124 4.124
31 H 0.076 0.924
32 H 0.075 0.925
33 H 0.081 0.919
34 H 0.093 0.907
35 H 0.070 0.930
36 H 0.068 0.932
37 H 0.086 0.914
38 H 0.157 0.843
39 H 0.155 0.845
40 H 0.093 0.907
41 H 0.094 0.906
42 H 0.245 0.755
43 H 0.249 0.751
44 H 0.060 0.940
45 H 0.042 0.958
46 H 0.072 0.928
47 H 0.135 0.865
48 H 0.134 0.866
49 H 0.133 0.867
50 H 0.135 0.865
51 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -7.014 19.871 -1.840 21.152
hybrid contribution 0.367 -1.358 -0.527 1.502
sum -6.647 18.513 -2.368 19.812
Atomic orbital electron populations
1.21945 0.95179 1.01893 1.02291 1.21057 0.96119 0.96988 0.96251
1.21721 1.00679 0.95208 1.01991 1.21770 1.00199 0.89016 0.91840
0.89202 1.58994 1.11827 1.62095 1.03957 1.22405 1.01388 0.94263
0.86735 1.45719 1.61386 1.09709 1.19624 1.20467 0.79623 0.82636
0.88361 1.90768 1.40383 1.64347 1.43388 1.19911 0.80966 0.83859
0.87028 1.90716 1.42614 1.64567 1.43086 1.45856 1.53686 1.08074
1.23838 1.20455 0.94151 0.96939 0.80496 0.89001 1.19430 0.97821
0.85878 0.98298 1.21100 1.19261 0.92274 1.23533 0.92453 1.24972
0.96640 0.95995 0.96395 1.69949 1.41929 0.98093 1.42944 0.86581
0.82247 0.77625 0.81530 1.20585 1.21149 1.19848 1.20468 0.94745
0.97043 0.95279 1.20943 0.92713 0.99898 0.99135 1.21050 0.99103
1.00889 0.93167 1.21019 0.95707 1.01862 0.96516 1.21050 0.93272
1.00942 0.98780 1.21006 0.99759 0.99324 0.92351 0.92421 0.92533
0.91928 0.90716 0.92991 0.93208 0.91350 0.84298 0.84503 0.90682
0.90616 0.75499 0.75060 0.93973 0.95799 0.92787 0.86508 0.86635
0.86744 0.86489 0.86039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.00 8.49 37.16 0.32 -0.68 16
2 C -0.08 -0.57 2.74 -90.62 -0.25 -0.82 16
3 C -0.14 -0.92 9.08 37.16 0.34 -0.58 16
4 C 0.08 0.62 2.74 -67.71 -0.19 0.44 16
5 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
6 N -0.84 -5.93 8.50 -4.66 -0.04 -5.97 16
7 C 0.08 0.74 5.20 -4.04 -0.02 0.72 16
8 N -0.71 -8.28 5.34 -60.73 -0.32 -8.60 16
9 C 0.51 7.96 7.89 -11.59 -0.09 7.87 16
10 O -0.51 -9.20 16.48 5.50 0.09 -9.11 16
11 C 0.50 8.87 7.85 -11.58 -0.09 8.78 16
12 O -0.53 -9.99 16.17 5.50 0.09 -9.90 16
13 N -0.66 -12.36 4.00 -55.36 -0.22 -12.58 16
14 C 0.18 3.66 2.10 -69.08 -0.14 3.52 16
15 H 0.09 1.95 7.47 -51.93 -0.39 1.56 16
16 C 0.02 0.55 4.50 -27.88 -0.13 0.42 16
17 C -0.52 -13.91 8.84 -34.44 -0.30 -14.22 16
18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16
19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
20 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16
21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16
24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
25 C -0.07 -1.34 4.93 -104.62 -0.52 -1.86 16
26 C -0.11 -1.81 9.33 -39.58 -0.37 -2.18 16
27 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16
28 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16
29 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16
30 C -0.11 -1.77 9.67 -39.59 -0.38 -2.15 16
31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.06 0.39 6.46 -51.93 -0.34 0.05 16
33 H 0.06 0.39 6.61 -51.93 -0.34 0.05 16
34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.07 0.50 7.75 -51.93 -0.40 0.10 16
38 H 0.34 2.30 7.04 -39.29 -0.28 2.02 16
39 H 0.34 2.44 7.53 -39.29 -0.30 2.15 16
40 H 0.08 0.74 6.34 -51.93 -0.33 0.41 16
41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
42 H 0.41 4.29 6.63 -40.82 -0.27 4.02 16
43 H 0.41 7.65 8.10 -40.82 -0.33 7.32 16
44 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16
45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16
46 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16
47 H 0.12 1.88 7.71 -52.48 -0.40 1.47 16
48 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16
49 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16
50 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16
51 H 0.12 1.92 8.04 -52.48 -0.42 1.50 16
LS Contribution 418.65 15.07 6.31 6.31
Total: -1.00 -30.76 418.65 -9.49 -40.25
By element:
Atomic # 1 Polarization: 21.98 SS G_CDS: -7.99 Total: 13.98 kcal
Atomic # 6 Polarization: -2.62 SS G_CDS: -3.12 Total: -5.73 kcal
Atomic # 7 Polarization: -52.19 SS G_CDS: 0.15 Total: -52.04 kcal
Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 6.31 Total: 6.31 kcal
Total: -30.76 -9.49 -40.25 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000419473578.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.498 kcal
(2) G-P(sol) polarization free energy of solvation -30.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds