Wall clock time and date at job start Wed Apr 1 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46700 * 2 1 4 4 C 1.53003 * 109.47099 * 119.99741 * 2 1 3 5 5 H 1.09003 * 109.46550 * 185.00053 * 4 2 1 6 6 N 1.46898 * 109.46995 * 305.00166 * 4 2 1 7 7 C 1.53004 * 109.46929 * 65.00285 * 4 2 1 8 8 N 1.46500 * 109.46905 * 184.99810 * 7 4 2 9 9 C 1.34776 * 119.99817 * 180.02562 * 8 7 4 10 10 O 1.21348 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.49450 * 119.99988 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99680 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99967 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99696 * 174.98147 * 13 11 9 15 15 H 1.08995 * 109.47551 * 326.45440 * 14 13 11 16 16 C 1.52997 * 109.47142 * 206.45125 * 14 13 11 17 17 C 1.50703 * 109.47172 * 65.33141 * 16 14 13 18 18 H 1.08000 * 119.99379 * 355.13568 * 17 16 14 19 19 C 1.37875 * 119.99862 * 175.13315 * 17 16 14 20 20 N 1.31514 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99551 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46876 * 90.00336 * 21 19 17 23 23 H 1.48498 * 109.46901 * 210.00087 * 21 19 17 24 24 H 1.48495 * 109.47335 * 329.99985 * 21 19 17 25 25 C 1.50706 * 109.46905 * 86.45327 * 14 13 11 26 26 C 1.38239 * 119.99821 * 39.72379 * 25 14 13 27 27 C 1.38230 * 119.99966 * 179.78894 * 26 25 14 28 28 C 1.38242 * 119.99934 * 0.43949 * 27 26 25 29 29 C 1.38236 * 119.99595 * 359.81704 * 28 27 26 30 30 C 1.38228 * 119.99958 * 220.00121 * 25 14 13 31 31 H 1.08997 * 109.47009 * 60.00285 * 1 2 3 32 32 H 1.09000 * 109.46595 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47030 * 299.99700 * 1 2 3 34 34 H 1.08996 * 109.47030 * 240.00300 * 2 1 3 35 35 H 1.09007 * 109.46982 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47157 * 299.99625 * 3 2 1 37 37 H 1.08996 * 109.47134 * 60.00364 * 3 2 1 38 38 H 1.00898 * 110.99614 * 60.00429 * 6 4 2 39 39 H 1.00902 * 110.99448 * 183.95595 * 6 4 2 40 40 H 1.08998 * 109.47057 * 305.00364 * 7 4 2 41 41 H 1.09000 * 109.46925 * 64.99582 * 7 4 2 42 42 H 0.97000 * 119.99754 * 0.02562 * 8 7 4 43 43 H 0.96993 * 119.99868 * 354.98756 * 13 11 9 44 44 H 1.08996 * 109.47080 * 185.33542 * 16 14 13 45 45 H 1.09005 * 109.47176 * 305.33556 * 16 14 13 46 46 H 0.96996 * 119.99788 * 179.97438 * 20 19 17 47 47 H 1.08005 * 119.99912 * 359.97438 * 26 25 14 48 48 H 1.07999 * 120.00263 * 180.27576 * 27 26 25 49 49 H 1.07994 * 120.00093 * 179.83127 * 28 27 26 50 50 H 1.08003 * 119.99546 * 180.02562 * 29 28 27 51 51 H 1.08003 * 120.00270 * 359.97189 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1264 -0.6442 1.2951 6 7 1.4543 -0.1019 2.4456 7 6 1.6353 -2.1955 1.1880 8 7 2.0185 -2.8593 2.4365 9 6 1.7598 -4.1707 2.6093 10 8 1.2091 -4.8014 1.7309 11 6 2.1511 -4.8481 3.8827 12 8 2.7014 -4.2172 4.7612 13 7 1.8920 -6.1593 4.0557 14 6 2.3724 -6.8488 5.2557 15 1 3.3268 -6.4213 5.5629 16 6 2.5548 -8.3368 4.9504 17 6 3.6531 -8.5099 3.9331 18 1 4.1156 -7.6429 3.4850 19 6 4.0675 -9.7751 3.5745 20 7 3.5040 -10.8309 4.1199 21 14 5.4294 -9.9896 2.3141 22 1 6.7430 -10.0251 3.0059 23 1 5.2244 -11.2614 1.5754 24 1 5.4035 -8.8528 1.3590 25 6 1.3672 -6.6834 6.3664 26 6 0.0144 -6.7518 6.0901 27 6 -0.9075 -6.6045 7.1094 28 6 -0.4768 -6.3798 8.4037 29 6 0.8758 -6.3062 8.6790 30 6 1.7978 -6.4578 7.6603 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 0.4472 -0.1605 2.4267 39 1 1.8250 -0.5182 3.2866 40 1 0.5564 -2.2707 1.0527 41 1 2.1409 -2.6765 0.3507 42 1 2.4583 -2.3550 3.1387 43 1 1.3875 -6.6465 3.3857 44 1 2.8206 -8.8656 5.8656 45 1 1.6245 -8.7430 4.5532 46 1 3.7953 -11.7209 3.8673 47 1 -0.3221 -6.9232 5.0782 48 1 -1.9642 -6.6623 6.8944 49 1 -1.1971 -6.2620 9.1997 50 1 1.2123 -6.1310 9.6903 51 1 2.8547 -6.4004 7.8755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419473578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:47 Heat of formation + Delta-G solvation = -62.743521 kcal Electronic energy + Delta-G solvation = -30549.486551 eV Core-core repulsion = 26447.919008 eV Total energy + Delta-G solvation = -4101.567543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54700 -39.30788 -38.49007 -37.76476 -35.54003 -34.47214 -32.77392 -31.91138 -31.19449 -30.51476 -28.92001 -28.45354 -27.46788 -25.55887 -24.30436 -22.60530 -22.31923 -21.97766 -20.58012 -19.91606 -19.59865 -18.33325 -17.06299 -16.91774 -16.52316 -16.18696 -15.81182 -15.69464 -15.23746 -14.96078 -14.66943 -14.55051 -14.33526 -14.15011 -14.04054 -13.63171 -13.47939 -13.11142 -13.07237 -12.88914 -12.67528 -12.55627 -12.29177 -12.14919 -12.05560 -11.67962 -11.46429 -11.26251 -11.14605 -11.06484 -10.99998 -10.98707 -10.76434 -10.65213 -10.48636 -9.86671 -9.43058 -9.36148 -9.30484 -9.09406 -8.68394 -8.56922 -8.48212 -8.25830 -6.11257 -4.15195 1.65325 1.70997 1.74824 2.53795 3.27292 3.34123 3.37953 3.47980 3.83414 4.16614 4.19756 4.32913 4.38675 4.55403 4.65476 4.79987 4.83690 5.05467 5.20732 5.21895 5.25900 5.27213 5.31011 5.38837 5.43009 5.47176 5.50349 5.63298 5.65234 5.78288 5.84044 5.86995 5.98690 6.04348 6.09433 6.12690 6.27529 6.35552 6.47233 6.64436 6.74441 6.78807 6.80002 6.97339 7.03332 7.06584 7.33997 7.43352 7.49773 7.70978 7.84136 7.98242 8.20556 8.36957 8.89768 9.50309 10.99238 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008041 B = 0.003081 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.110674 B = 9085.907791 C =11772.297743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.139 4.139 4 C 0.084 3.916 5 H 0.090 0.910 6 N -0.837 5.837 7 C 0.078 3.922 8 N -0.709 5.709 9 C 0.508 3.492 10 O -0.514 6.514 11 C 0.503 3.497 12 O -0.532 6.532 13 N -0.665 5.665 14 C 0.183 3.817 15 H 0.092 0.908 16 C 0.023 3.977 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.074 4.074 26 C -0.109 4.109 27 C -0.124 4.124 28 C -0.133 4.133 29 C -0.122 4.122 30 C -0.106 4.106 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.343 0.657 39 H 0.341 0.659 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.408 0.592 43 H 0.413 0.587 44 H 0.042 0.958 45 H 0.024 0.976 46 H 0.262 0.738 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 19.434 -1.554 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 C -0.196 4.196 4 C -0.028 4.028 5 H 0.108 0.892 6 N -0.369 5.369 7 C -0.048 4.048 8 N -0.364 5.364 9 C 0.289 3.711 10 O -0.389 6.389 11 C 0.282 3.718 12 O -0.410 6.410 13 N -0.315 5.315 14 C 0.080 3.920 15 H 0.110 0.890 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.075 4.075 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.151 4.151 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.014 19.871 -1.840 21.152 hybrid contribution 0.367 -1.358 -0.527 1.502 sum -6.647 18.513 -2.368 19.812 Atomic orbital electron populations 1.21945 0.95179 1.01893 1.02291 1.21057 0.96119 0.96988 0.96251 1.21721 1.00679 0.95208 1.01991 1.21770 1.00199 0.89016 0.91840 0.89202 1.58994 1.11827 1.62095 1.03957 1.22405 1.01388 0.94263 0.86735 1.45719 1.61386 1.09709 1.19624 1.20467 0.79623 0.82636 0.88361 1.90768 1.40383 1.64347 1.43388 1.19911 0.80966 0.83859 0.87028 1.90716 1.42614 1.64567 1.43086 1.45856 1.53686 1.08074 1.23838 1.20455 0.94151 0.96939 0.80496 0.89001 1.19430 0.97821 0.85878 0.98298 1.21100 1.19261 0.92274 1.23533 0.92453 1.24972 0.96640 0.95995 0.96395 1.69949 1.41929 0.98093 1.42944 0.86581 0.82247 0.77625 0.81530 1.20585 1.21149 1.19848 1.20468 0.94745 0.97043 0.95279 1.20943 0.92713 0.99898 0.99135 1.21050 0.99103 1.00889 0.93167 1.21019 0.95707 1.01862 0.96516 1.21050 0.93272 1.00942 0.98780 1.21006 0.99759 0.99324 0.92351 0.92421 0.92533 0.91928 0.90716 0.92991 0.93208 0.91350 0.84298 0.84503 0.90682 0.90616 0.75499 0.75060 0.93973 0.95799 0.92787 0.86508 0.86635 0.86744 0.86489 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.49 37.16 0.32 -0.68 16 2 C -0.08 -0.57 2.74 -90.62 -0.25 -0.82 16 3 C -0.14 -0.92 9.08 37.16 0.34 -0.58 16 4 C 0.08 0.62 2.74 -67.71 -0.19 0.44 16 5 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 6 N -0.84 -5.93 8.50 -4.66 -0.04 -5.97 16 7 C 0.08 0.74 5.20 -4.04 -0.02 0.72 16 8 N -0.71 -8.28 5.34 -60.73 -0.32 -8.60 16 9 C 0.51 7.96 7.89 -11.59 -0.09 7.87 16 10 O -0.51 -9.20 16.48 5.50 0.09 -9.11 16 11 C 0.50 8.87 7.85 -11.58 -0.09 8.78 16 12 O -0.53 -9.99 16.17 5.50 0.09 -9.90 16 13 N -0.66 -12.36 4.00 -55.36 -0.22 -12.58 16 14 C 0.18 3.66 2.10 -69.08 -0.14 3.52 16 15 H 0.09 1.95 7.47 -51.93 -0.39 1.56 16 16 C 0.02 0.55 4.50 -27.88 -0.13 0.42 16 17 C -0.52 -13.91 8.84 -34.44 -0.30 -14.22 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.07 -1.34 4.93 -104.62 -0.52 -1.86 16 26 C -0.11 -1.81 9.33 -39.58 -0.37 -2.18 16 27 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 28 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 29 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 30 C -0.11 -1.77 9.67 -39.59 -0.38 -2.15 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 6.46 -51.93 -0.34 0.05 16 33 H 0.06 0.39 6.61 -51.93 -0.34 0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.50 7.75 -51.93 -0.40 0.10 16 38 H 0.34 2.30 7.04 -39.29 -0.28 2.02 16 39 H 0.34 2.44 7.53 -39.29 -0.30 2.15 16 40 H 0.08 0.74 6.34 -51.93 -0.33 0.41 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.41 4.29 6.63 -40.82 -0.27 4.02 16 43 H 0.41 7.65 8.10 -40.82 -0.33 7.32 16 44 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 47 H 0.12 1.88 7.71 -52.48 -0.40 1.47 16 48 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 49 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 50 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 51 H 0.12 1.92 8.04 -52.48 -0.42 1.50 16 LS Contribution 418.65 15.07 6.31 6.31 Total: -1.00 -30.76 418.65 -9.49 -40.25 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.99 Total: 13.98 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.12 Total: -5.73 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.15 Total: -52.04 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -30.76 -9.49 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419473578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.498 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds