Wall clock time and date at job start Wed Apr 1 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46700 * 2 1 4 4 C 1.53003 * 109.47099 * 119.99741 * 2 1 3 5 5 H 1.09003 * 109.46550 * 185.00053 * 4 2 1 6 6 N 1.46898 * 109.46995 * 305.00166 * 4 2 1 7 7 C 1.53004 * 109.46929 * 65.00285 * 4 2 1 8 8 N 1.46500 * 109.46905 * 184.99810 * 7 4 2 9 9 C 1.34776 * 119.99817 * 180.02562 * 8 7 4 10 10 O 1.21348 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.49450 * 119.99988 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99680 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99967 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99696 * 174.98147 * 13 11 9 15 15 H 1.08995 * 109.47551 * 326.45440 * 14 13 11 16 16 C 1.52997 * 109.47142 * 206.45125 * 14 13 11 17 17 C 1.50703 * 109.47172 * 65.33141 * 16 14 13 18 18 H 1.08000 * 119.99379 * 355.13568 * 17 16 14 19 19 C 1.37875 * 119.99862 * 175.13315 * 17 16 14 20 20 N 1.31514 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99551 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46876 * 90.00336 * 21 19 17 23 23 H 1.48498 * 109.46901 * 210.00087 * 21 19 17 24 24 H 1.48495 * 109.47335 * 329.99985 * 21 19 17 25 25 C 1.50706 * 109.46905 * 86.45327 * 14 13 11 26 26 C 1.38239 * 119.99821 * 39.72379 * 25 14 13 27 27 C 1.38230 * 119.99966 * 179.78894 * 26 25 14 28 28 C 1.38242 * 119.99934 * 0.43949 * 27 26 25 29 29 C 1.38236 * 119.99595 * 359.81704 * 28 27 26 30 30 C 1.38228 * 119.99958 * 220.00121 * 25 14 13 31 31 H 1.08997 * 109.47009 * 60.00285 * 1 2 3 32 32 H 1.09000 * 109.46595 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47030 * 299.99700 * 1 2 3 34 34 H 1.08996 * 109.47030 * 240.00300 * 2 1 3 35 35 H 1.09007 * 109.46982 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47157 * 299.99625 * 3 2 1 37 37 H 1.08996 * 109.47134 * 60.00364 * 3 2 1 38 38 H 1.00898 * 110.99614 * 60.00429 * 6 4 2 39 39 H 1.00902 * 110.99448 * 183.95595 * 6 4 2 40 40 H 1.08998 * 109.47057 * 305.00364 * 7 4 2 41 41 H 1.09000 * 109.46925 * 64.99582 * 7 4 2 42 42 H 0.97000 * 119.99754 * 0.02562 * 8 7 4 43 43 H 0.96993 * 119.99868 * 354.98756 * 13 11 9 44 44 H 1.08996 * 109.47080 * 185.33542 * 16 14 13 45 45 H 1.09005 * 109.47176 * 305.33556 * 16 14 13 46 46 H 0.96996 * 119.99788 * 179.97438 * 20 19 17 47 47 H 1.08005 * 119.99912 * 359.97438 * 26 25 14 48 48 H 1.07999 * 120.00263 * 180.27576 * 27 26 25 49 49 H 1.07994 * 120.00093 * 179.83127 * 28 27 26 50 50 H 1.08003 * 119.99546 * 180.02562 * 29 28 27 51 51 H 1.08003 * 120.00270 * 359.97189 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1264 -0.6442 1.2951 6 7 1.4543 -0.1019 2.4456 7 6 1.6353 -2.1955 1.1880 8 7 2.0185 -2.8593 2.4365 9 6 1.7598 -4.1707 2.6093 10 8 1.2091 -4.8014 1.7309 11 6 2.1511 -4.8481 3.8827 12 8 2.7014 -4.2172 4.7612 13 7 1.8920 -6.1593 4.0557 14 6 2.3724 -6.8488 5.2557 15 1 3.3268 -6.4213 5.5629 16 6 2.5548 -8.3368 4.9504 17 6 3.6531 -8.5099 3.9331 18 1 4.1156 -7.6429 3.4850 19 6 4.0675 -9.7751 3.5745 20 7 3.5040 -10.8309 4.1199 21 14 5.4294 -9.9896 2.3141 22 1 6.7430 -10.0251 3.0059 23 1 5.2244 -11.2614 1.5754 24 1 5.4035 -8.8528 1.3590 25 6 1.3672 -6.6834 6.3664 26 6 0.0144 -6.7518 6.0901 27 6 -0.9075 -6.6045 7.1094 28 6 -0.4768 -6.3798 8.4037 29 6 0.8758 -6.3062 8.6790 30 6 1.7978 -6.4578 7.6603 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 0.4472 -0.1605 2.4267 39 1 1.8250 -0.5182 3.2866 40 1 0.5564 -2.2707 1.0527 41 1 2.1409 -2.6765 0.3507 42 1 2.4583 -2.3550 3.1387 43 1 1.3875 -6.6465 3.3857 44 1 2.8206 -8.8656 5.8656 45 1 1.6245 -8.7430 4.5532 46 1 3.7953 -11.7209 3.8673 47 1 -0.3221 -6.9232 5.0782 48 1 -1.9642 -6.6623 6.8944 49 1 -1.1971 -6.2620 9.1997 50 1 1.2123 -6.1310 9.6903 51 1 2.8547 -6.4004 7.8755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419473578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:46 Heat of formation + Delta-G solvation = -83.332235 kcal Electronic energy + Delta-G solvation = -30550.379345 eV Core-core repulsion = 26447.919008 eV Total energy + Delta-G solvation = -4102.460337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86455 -40.52466 -39.54453 -38.83995 -37.04561 -35.53920 -34.73315 -32.63755 -32.55958 -31.71582 -30.60090 -29.33882 -28.00339 -27.14479 -25.59376 -23.85885 -23.60947 -23.22606 -21.80686 -21.29258 -20.41073 -19.55022 -18.66208 -18.11328 -17.72349 -17.45415 -17.03616 -16.79138 -16.67822 -16.33936 -16.15597 -15.59218 -15.45969 -15.07821 -14.91114 -14.73071 -14.60945 -14.45309 -14.21039 -14.10674 -13.87001 -13.70865 -13.54442 -13.51791 -12.95834 -12.86448 -12.83417 -12.67498 -12.66755 -12.46136 -12.18430 -11.90131 -11.85179 -11.67726 -11.61405 -11.56421 -11.38595 -10.77839 -10.59179 -10.41803 -10.20297 -9.77561 -9.72598 -9.56023 -8.23417 -6.33659 0.30963 0.47161 0.54276 1.30418 1.37528 1.38366 1.48727 2.11753 2.37414 2.59694 2.95576 3.11142 3.41682 3.56681 3.65479 3.91725 3.95707 3.99880 4.04801 4.19266 4.21991 4.30932 4.36288 4.42303 4.56484 4.59272 4.71475 4.74932 4.75548 4.84511 4.92714 5.03558 5.04783 5.09900 5.12161 5.12235 5.18636 5.27901 5.37562 5.47287 5.49899 5.58361 5.59407 5.63040 5.73165 5.74291 5.92274 6.11660 6.13852 6.17114 6.35040 6.46092 6.68471 6.78465 6.92829 7.35274 8.87348 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008041 B = 0.003081 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.110674 B = 9085.907791 C =11772.297743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 C -0.135 4.135 4 C 0.094 3.906 5 H 0.091 0.909 6 N -0.836 5.836 7 C 0.077 3.923 8 N -0.687 5.687 9 C 0.512 3.488 10 O -0.540 6.540 11 C 0.502 3.498 12 O -0.545 6.545 13 N -0.668 5.668 14 C 0.199 3.801 15 H 0.074 0.926 16 C 0.036 3.964 17 C -0.533 4.533 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.270 1.270 25 C -0.100 4.100 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.121 4.121 30 C -0.126 4.126 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.346 0.654 39 H 0.341 0.659 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.416 0.584 43 H 0.412 0.588 44 H 0.016 0.984 45 H 0.007 0.993 46 H 0.265 0.735 47 H 0.113 0.887 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.147 0.853 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 21.203 -1.325 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.192 4.192 4 C -0.018 4.018 5 H 0.109 0.891 6 N -0.367 5.367 7 C -0.047 4.047 8 N -0.342 5.342 9 C 0.292 3.708 10 O -0.417 6.417 11 C 0.282 3.718 12 O -0.423 6.423 13 N -0.317 5.317 14 C 0.095 3.905 15 H 0.092 0.908 16 C -0.002 4.002 17 C -0.571 4.571 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.780 3.220 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.101 4.101 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.139 4.139 30 C -0.145 4.145 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.248 0.752 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.162 0.838 49 H 0.170 0.830 50 H 0.165 0.835 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.703 21.693 -1.607 23.076 hybrid contribution 0.536 -1.837 -0.536 1.987 sum -7.167 19.856 -2.143 21.219 Atomic orbital electron populations 1.21929 0.94853 1.01652 1.02708 1.21061 0.96371 0.97014 0.95830 1.21678 1.00600 0.94924 1.02006 1.21722 1.00263 0.87389 0.92474 0.89114 1.59001 1.12146 1.61782 1.03790 1.22610 1.01470 0.95387 0.85260 1.45676 1.59743 1.08268 1.20494 1.20067 0.79857 0.83689 0.87172 1.90760 1.42007 1.65156 1.43788 1.20267 0.80382 0.83405 0.87721 1.90698 1.43137 1.64714 1.43778 1.45778 1.53838 1.08646 1.23461 1.19968 0.94493 0.94155 0.81861 0.90808 1.19168 0.96151 0.88560 0.96295 1.21401 1.19685 0.92205 1.23805 0.92834 1.25770 0.98914 0.95798 0.98286 1.70059 1.43441 0.98517 1.44397 0.85595 0.79555 0.77618 0.79186 1.19854 1.20607 1.19511 1.20344 0.94933 0.99687 0.95161 1.21054 0.92610 1.00745 0.99920 1.21414 1.00135 0.99710 0.93023 1.21488 0.96106 0.99685 0.97081 1.21419 0.93369 0.99618 0.99486 1.21181 1.00474 1.00237 0.92563 0.91862 0.93058 0.91709 0.90415 0.93071 0.92516 0.91996 0.83882 0.84472 0.90483 0.91112 0.74606 0.75201 0.96606 0.97437 0.92646 0.86886 0.83834 0.83005 0.83488 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.49 71.98 0.61 -1.12 16 2 C -0.08 -0.99 2.74 -10.79 -0.03 -1.02 16 3 C -0.13 -1.56 9.08 71.98 0.65 -0.91 16 4 C 0.09 1.26 2.74 44.92 0.12 1.38 16 5 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 6 N -0.84 -10.56 8.50 -168.67 -1.43 -11.99 16 7 C 0.08 1.40 5.20 86.38 0.45 1.85 16 8 N -0.69 -15.54 5.34 -464.41 -2.48 -18.02 16 9 C 0.51 16.05 7.89 87.27 0.69 16.74 16 10 O -0.54 -19.45 16.48 -3.24 -0.05 -19.50 16 11 C 0.50 18.04 7.85 87.27 0.69 18.73 16 12 O -0.54 -20.71 16.17 -3.24 -0.05 -20.76 16 13 N -0.67 -25.84 4.00 -447.43 -1.79 -27.63 16 14 C 0.20 8.37 2.10 44.25 0.09 8.46 16 15 H 0.07 3.31 7.47 -2.39 -0.02 3.29 16 16 C 0.04 1.79 4.50 29.85 0.13 1.93 16 17 C -0.53 -29.26 8.84 25.60 0.23 -29.03 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.63 5.46 84.65 0.46 1.09 16 20 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 21 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C -0.10 -3.73 4.93 -19.86 -0.10 -3.83 16 26 C -0.12 -4.19 9.33 22.27 0.21 -3.99 16 27 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 28 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 29 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 30 C -0.13 -4.23 9.67 22.27 0.22 -4.01 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.63 6.46 -2.39 -0.02 0.62 16 33 H 0.06 0.70 6.61 -2.39 -0.02 0.68 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.81 7.75 -2.39 -0.02 0.79 16 38 H 0.35 4.09 7.04 -89.70 -0.63 3.46 16 39 H 0.34 4.37 7.53 -89.69 -0.68 3.70 16 40 H 0.08 1.43 6.34 -2.39 -0.02 1.41 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.42 8.32 6.63 -92.71 -0.61 7.71 16 43 H 0.41 16.02 8.10 -92.71 -0.75 15.27 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 47 H 0.11 3.75 7.71 -2.91 -0.02 3.73 16 48 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 49 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 50 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 51 H 0.12 3.90 8.04 -2.91 -0.02 3.88 16 Total: -1.00 -67.25 418.65 -0.10 -67.35 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -1.70 Total: 41.36 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.09 Total: -2.77 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -5.42 Total: -111.86 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.11 Total: -40.26 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.25 -0.10 -67.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419473578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.985 kcal (2) G-P(sol) polarization free energy of solvation -67.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds