Wall clock time and date at job start Wed Apr 1 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63941 * 2 1 4 4 C 1.34848 * 108.21950 * 180.26466 * 3 2 1 5 5 C 1.40898 * 107.41670 * 359.72829 * 4 3 2 6 6 C 1.34851 * 107.41882 * 0.02562 * 5 4 3 7 7 C 1.50693 * 125.89090 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.99871 * 154.60177 * 7 6 5 9 9 C 1.54320 * 109.88137 * 275.69294 * 7 6 5 10 10 C 1.55154 * 102.94392 * 141.61206 * 9 7 6 11 11 C 1.55133 * 101.48402 * 324.33591 * 10 9 7 12 12 N 1.47018 * 109.88323 * 33.50537 * 7 6 5 13 13 C 1.34775 * 125.65262 * 61.60754 * 12 7 6 14 14 O 1.21353 * 119.99486 * 359.97438 * 13 12 7 15 15 C 1.49447 * 120.00105 * 180.02562 * 13 12 7 16 16 O 1.21346 * 120.00065 * 359.97438 * 15 13 12 17 17 N 1.34784 * 119.99521 * 179.97438 * 15 13 12 18 18 C 1.46507 * 119.99568 * 179.97438 * 17 15 13 19 19 C 1.52991 * 109.46895 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47103 * 299.99848 * 19 18 17 21 21 C 1.52998 * 109.47645 * 60.00127 * 19 18 17 22 22 C 1.50706 * 109.47059 * 180.02562 * 19 18 17 23 23 H 1.07993 * 119.99869 * 1.70542 * 22 19 18 24 24 C 1.37883 * 119.99996 * 181.71386 * 22 19 18 25 25 N 1.31512 * 119.99765 * 194.43840 * 24 22 19 26 26 Si 1.86796 * 120.00038 * 14.43665 * 24 22 19 27 27 H 1.48500 * 109.47215 * 84.56429 * 26 24 22 28 28 H 1.48496 * 109.47162 * 204.56865 * 26 24 22 29 29 H 1.48505 * 109.47467 * 324.56797 * 26 24 22 30 30 H 1.08996 * 109.47455 * 265.01268 * 1 2 3 31 31 H 1.08999 * 109.47052 * 25.01223 * 1 2 3 32 32 H 1.09006 * 109.47091 * 145.00626 * 1 2 3 33 33 H 1.07998 * 125.88767 * 359.97437 * 3 2 1 34 34 H 1.07996 * 126.29239 * 179.71754 * 4 3 2 35 35 H 1.08000 * 126.29145 * 180.02562 * 5 4 3 36 36 H 1.09002 * 110.72231 * 259.97538 * 9 7 6 37 37 H 1.08995 * 110.72210 * 23.07322 * 9 7 6 38 38 H 1.09005 * 111.00380 * 82.56910 * 10 9 7 39 39 H 1.09000 * 111.01142 * 206.38853 * 10 9 7 40 40 H 1.09001 * 110.49380 * 278.45096 * 11 10 9 41 41 H 1.09002 * 110.34648 * 156.05760 * 11 10 9 42 42 H 0.96994 * 120.00382 * 359.97438 * 17 15 13 43 43 H 1.08995 * 109.47191 * 59.99815 * 18 17 15 44 44 H 1.09000 * 109.46945 * 300.00185 * 18 17 15 45 45 H 1.09009 * 109.47373 * 188.31902 * 20 19 18 46 46 H 1.09000 * 109.47223 * 68.31909 * 20 19 18 47 47 H 1.08998 * 109.47248 * 308.31575 * 20 19 18 48 48 H 1.09007 * 109.46841 * 300.00182 * 21 19 18 49 49 H 1.09000 * 109.47043 * 59.99468 * 21 19 18 50 50 H 1.08997 * 109.47736 * 180.02562 * 21 19 18 51 51 H 0.97000 * 119.99633 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0059 5 6 3.5460 -0.7046 -0.0033 6 6 2.2593 -1.1082 0.0035 7 6 1.7818 -2.5375 0.0078 8 1 0.7883 -2.5972 0.4521 9 6 1.7450 -3.0829 -1.4353 10 6 2.2342 -4.5456 -1.2666 11 6 3.2881 -4.3907 -0.1388 12 7 2.7205 -3.3760 0.7676 13 6 3.0172 -3.2365 2.0749 14 8 2.4914 -2.3578 2.7260 15 6 3.9947 -4.1633 2.7222 16 8 4.5208 -5.0417 2.0710 17 7 4.2918 -4.0235 4.0295 18 6 5.2496 -4.9323 4.6642 19 6 5.4053 -4.5597 6.1399 20 6 5.9157 -3.1217 6.2516 21 6 4.0504 -4.6759 6.8410 22 6 6.3910 -5.4942 6.7927 23 1 6.8802 -6.2582 6.2068 24 6 6.6681 -5.3739 8.1380 25 7 7.7161 -5.9812 8.6504 26 14 5.5549 -4.3485 9.2328 27 1 4.4037 -5.1733 9.6796 28 1 6.3191 -3.8820 10.4176 29 1 5.0568 -3.1747 8.4716 30 1 -0.3634 -0.0893 1.0237 31 1 -0.3633 0.9313 -0.4345 32 1 -0.3633 -0.8419 -0.5894 33 1 1.9172 2.1324 -0.0004 34 1 4.4165 1.3435 -0.0118 35 1 4.4165 -1.3439 -0.0063 36 1 0.7296 -3.0591 -1.8309 37 1 2.4210 -2.5191 -2.0780 38 1 1.4176 -5.1973 -0.9559 39 1 2.6961 -4.9115 -2.1837 40 1 4.2373 -4.0451 -0.5483 41 1 3.4225 -5.3361 0.3868 42 1 3.8715 -3.3211 4.5499 43 1 6.2147 -4.8499 4.1645 44 1 4.8858 -5.9568 4.5849 45 1 6.1669 -2.9049 7.2900 46 1 5.1405 -2.4337 5.9141 47 1 6.8033 -3.0019 5.6305 48 1 3.3377 -3.9997 6.3687 49 1 3.6867 -5.7003 6.7613 50 1 4.1611 -4.4100 7.8922 51 1 7.9112 -5.8962 9.5968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422487792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:56 Heat of formation + Delta-G solvation = 11.055502 kcal Electronic energy + Delta-G solvation = -31685.979780 eV Core-core repulsion = 27587.612402 eV Total energy + Delta-G solvation = -4098.367377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60876 -40.42541 -38.76944 -37.48544 -36.77209 -33.43608 -33.02108 -31.83578 -31.47593 -31.00384 -27.20989 -26.87389 -26.54937 -26.35547 -25.18878 -24.43855 -22.34295 -21.65238 -20.71060 -20.11275 -19.37050 -18.78964 -17.74964 -17.21120 -16.93209 -16.16802 -15.91209 -15.53279 -15.43497 -15.14286 -14.92346 -14.43259 -14.15330 -13.91800 -13.73853 -13.46431 -13.21351 -13.18685 -13.05081 -12.89048 -12.67763 -12.58974 -12.56339 -12.22471 -12.17637 -12.06417 -12.00640 -11.75896 -11.65269 -11.34359 -11.11736 -11.00533 -10.47655 -10.30751 -10.18169 -10.06713 -9.33645 -9.10965 -8.99581 -8.68709 -8.67427 -8.67003 -8.45843 -8.07549 -6.15644 -4.13011 1.62568 2.02094 2.39224 2.84450 2.98261 3.25976 3.33829 3.40164 3.42845 3.70170 4.21133 4.32237 4.36144 4.44492 4.48168 4.68174 4.79836 4.85174 4.87150 5.01029 5.09039 5.15414 5.17386 5.40153 5.45136 5.53458 5.56730 5.68534 5.71165 5.73233 5.88515 6.00439 6.01885 6.05892 6.21343 6.27780 6.36138 6.42229 6.51256 6.59788 6.64843 6.69110 6.90823 6.93202 7.08541 7.17792 7.19091 7.24067 7.40999 7.52728 7.70990 7.91712 8.28241 8.43924 8.88970 9.48515 10.97249 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.002697 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.239797 B =10380.736649 C =11253.427574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.444 5.444 3 C -0.014 4.014 4 C -0.198 4.198 5 C -0.178 4.178 6 C 0.011 3.989 7 C 0.209 3.791 8 H 0.079 0.921 9 C -0.123 4.123 10 C -0.135 4.135 11 C 0.097 3.903 12 N -0.585 5.585 13 C 0.524 3.476 14 O -0.513 6.513 15 C 0.502 3.498 16 O -0.526 6.526 17 N -0.687 5.687 18 C 0.140 3.860 19 C 0.029 3.971 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.514 4.514 23 H 0.078 0.922 24 C 0.077 3.923 25 N -0.890 5.890 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.305 1.305 29 H -0.249 1.249 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.409 0.591 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.024 0.976 47 H 0.048 0.952 48 H 0.031 0.969 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.998 10.080 -22.223 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.120 5.120 3 C -0.144 4.144 4 C -0.223 4.223 5 C -0.202 4.202 6 C -0.101 4.101 7 C 0.104 3.896 8 H 0.097 0.903 9 C -0.161 4.161 10 C -0.173 4.173 11 C -0.025 4.025 12 N -0.320 5.320 13 C 0.307 3.693 14 O -0.387 6.387 15 C 0.282 3.718 16 O -0.403 6.403 17 N -0.339 5.339 18 C 0.018 3.982 19 C 0.028 3.972 20 C -0.201 4.201 21 C -0.208 4.208 22 C -0.552 4.552 23 H 0.096 0.904 24 C -0.126 4.126 25 N -0.526 5.526 26 Si 0.717 3.283 27 H -0.213 1.213 28 H -0.234 1.234 29 H -0.175 1.175 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.246 0.754 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.130 9.873 -22.038 29.041 hybrid contribution -0.739 0.982 1.121 1.663 sum -16.869 10.856 -20.917 28.982 Atomic orbital electron populations 1.21988 0.77746 1.03932 1.03326 1.43750 1.05794 1.05564 1.56893 1.21732 0.90539 0.91039 1.11091 1.20858 0.95946 0.95026 1.10484 1.20546 0.95056 0.94989 1.09657 1.20272 0.90741 0.87965 1.11103 1.19794 0.92582 0.84883 0.92304 0.90295 1.22728 1.02786 0.96494 0.94081 1.22910 0.99156 0.96046 0.99199 1.22738 0.96144 0.93274 0.90296 1.48176 1.43525 1.32438 1.07890 1.20135 0.83056 0.84946 0.81170 1.90757 1.51908 1.33667 1.62353 1.19832 0.83291 0.85054 0.83628 1.90683 1.52509 1.34302 1.62850 1.46189 1.43976 1.34952 1.08738 1.21715 0.90735 0.91938 0.93827 1.18733 0.93717 0.94557 0.90227 1.22300 0.99301 0.96726 1.01821 1.22403 0.98015 1.00586 0.99801 1.20679 1.23226 1.16819 0.94466 0.90439 1.24952 0.94446 0.95097 0.98083 1.69950 1.24916 1.44237 1.13533 0.87300 0.80067 0.81739 0.79195 1.21304 1.23365 1.17474 0.90902 0.89776 0.90286 0.82274 0.84819 0.85402 0.89965 0.89703 0.90363 0.89346 0.90767 0.87512 0.75450 0.91165 0.91297 0.92458 0.95727 0.93271 0.94988 0.92704 0.93848 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.63 59.85 0.64 1.10 16 2 N -0.44 -4.63 3.15 -119.90 -0.38 -5.00 16 3 C -0.01 -0.15 11.42 -16.75 -0.19 -0.34 16 4 C -0.20 -2.42 10.86 -39.78 -0.43 -2.85 16 5 C -0.18 -2.37 10.19 -39.78 -0.41 -2.77 16 6 C 0.01 0.13 5.06 -81.79 -0.41 -0.28 16 7 C 0.21 2.18 2.93 -68.11 -0.20 1.98 16 8 H 0.08 0.81 7.66 -51.93 -0.40 0.41 16 9 C -0.12 -0.87 6.46 -24.90 -0.16 -1.03 16 10 C -0.14 -0.93 7.10 -24.46 -0.17 -1.10 16 11 C 0.10 1.02 6.08 -2.41 -0.01 1.00 16 12 N -0.59 -7.37 2.73 -164.69 -0.45 -7.82 16 13 C 0.52 8.26 7.55 -11.59 -0.09 8.17 16 14 O -0.51 -9.13 16.31 5.49 0.09 -9.04 16 15 C 0.50 8.57 7.86 -11.58 -0.09 8.48 16 16 O -0.53 -9.47 13.77 5.50 0.08 -9.40 16 17 N -0.69 -12.15 5.00 -60.73 -0.30 -12.46 16 18 C 0.14 2.78 4.50 -4.04 -0.02 2.76 16 19 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 20 C -0.14 -3.04 7.57 37.16 0.28 -2.76 16 21 C -0.15 -3.16 7.49 37.16 0.28 -2.88 16 22 C -0.51 -13.75 8.62 -34.44 -0.30 -14.05 16 23 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 24 C 0.08 2.15 5.32 -17.82 -0.09 2.05 16 25 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 26 Si 0.88 21.35 22.83 -169.99 -3.88 17.47 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.25 -5.55 4.65 56.52 0.26 -5.29 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.08 0.38 7.81 -51.93 -0.41 -0.02 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.28 6.14 -51.93 -0.32 0.96 16 42 H 0.41 7.06 5.71 -40.82 -0.23 6.83 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.06 1.28 4.37 -51.92 -0.23 1.05 16 46 H 0.02 0.45 7.10 -51.93 -0.37 0.08 16 47 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 48 H 0.03 0.58 6.86 -51.93 -0.36 0.22 16 49 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.04 0.96 2.18 -51.93 -0.11 0.84 16 51 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -32.89 394.29 -7.61 -40.50 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.02 Total: 7.57 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.46 Total: -1.97 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.36 Total: -51.08 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.17 Total: -18.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.88 Total: 17.47 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.89 -7.61 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.553 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds