Wall clock time and date at job start Wed Apr 1 2020 05:41:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36343 * 125.63941 * 2 1
4 4 C 1.34848 * 108.21950 * 180.26466 * 3 2 1
5 5 C 1.40898 * 107.41670 * 359.72829 * 4 3 2
6 6 C 1.34851 * 107.41882 * 0.02562 * 5 4 3
7 7 C 1.50693 * 125.89090 * 179.97438 * 6 5 4
8 8 H 1.08999 * 109.99871 * 154.60177 * 7 6 5
9 9 C 1.54320 * 109.88137 * 275.69294 * 7 6 5
10 10 C 1.55154 * 102.94392 * 141.61206 * 9 7 6
11 11 C 1.55133 * 101.48402 * 324.33591 * 10 9 7
12 12 N 1.47018 * 109.88323 * 33.50537 * 7 6 5
13 13 C 1.34775 * 125.65262 * 61.60754 * 12 7 6
14 14 O 1.21353 * 119.99486 * 359.97438 * 13 12 7
15 15 C 1.49447 * 120.00105 * 180.02562 * 13 12 7
16 16 O 1.21346 * 120.00065 * 359.97438 * 15 13 12
17 17 N 1.34784 * 119.99521 * 179.97438 * 15 13 12
18 18 C 1.46507 * 119.99568 * 179.97438 * 17 15 13
19 19 C 1.52991 * 109.46895 * 180.02562 * 18 17 15
20 20 C 1.52999 * 109.47103 * 299.99848 * 19 18 17
21 21 C 1.52998 * 109.47645 * 60.00127 * 19 18 17
22 22 C 1.50706 * 109.47059 * 180.02562 * 19 18 17
23 23 H 1.07993 * 119.99869 * 1.70542 * 22 19 18
24 24 C 1.37883 * 119.99996 * 181.71386 * 22 19 18
25 25 N 1.31512 * 119.99765 * 194.43840 * 24 22 19
26 26 Si 1.86796 * 120.00038 * 14.43665 * 24 22 19
27 27 H 1.48500 * 109.47215 * 84.56429 * 26 24 22
28 28 H 1.48496 * 109.47162 * 204.56865 * 26 24 22
29 29 H 1.48505 * 109.47467 * 324.56797 * 26 24 22
30 30 H 1.08996 * 109.47455 * 265.01268 * 1 2 3
31 31 H 1.08999 * 109.47052 * 25.01223 * 1 2 3
32 32 H 1.09006 * 109.47091 * 145.00626 * 1 2 3
33 33 H 1.07998 * 125.88767 * 359.97437 * 3 2 1
34 34 H 1.07996 * 126.29239 * 179.71754 * 4 3 2
35 35 H 1.08000 * 126.29145 * 180.02562 * 5 4 3
36 36 H 1.09002 * 110.72231 * 259.97538 * 9 7 6
37 37 H 1.08995 * 110.72210 * 23.07322 * 9 7 6
38 38 H 1.09005 * 111.00380 * 82.56910 * 10 9 7
39 39 H 1.09000 * 111.01142 * 206.38853 * 10 9 7
40 40 H 1.09001 * 110.49380 * 278.45096 * 11 10 9
41 41 H 1.09002 * 110.34648 * 156.05760 * 11 10 9
42 42 H 0.96994 * 120.00382 * 359.97438 * 17 15 13
43 43 H 1.08995 * 109.47191 * 59.99815 * 18 17 15
44 44 H 1.09000 * 109.46945 * 300.00185 * 18 17 15
45 45 H 1.09009 * 109.47373 * 188.31902 * 20 19 18
46 46 H 1.09000 * 109.47223 * 68.31909 * 20 19 18
47 47 H 1.08998 * 109.47248 * 308.31575 * 20 19 18
48 48 H 1.09007 * 109.46841 * 300.00182 * 21 19 18
49 49 H 1.09000 * 109.47043 * 59.99468 * 21 19 18
50 50 H 1.08997 * 109.47736 * 180.02562 * 21 19 18
51 51 H 0.97000 * 119.99633 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2594 1.1081 0.0000
4 6 3.5461 0.7044 -0.0059
5 6 3.5460 -0.7046 -0.0033
6 6 2.2593 -1.1082 0.0035
7 6 1.7818 -2.5375 0.0078
8 1 0.7883 -2.5972 0.4521
9 6 1.7450 -3.0829 -1.4353
10 6 2.2342 -4.5456 -1.2666
11 6 3.2881 -4.3907 -0.1388
12 7 2.7205 -3.3760 0.7676
13 6 3.0172 -3.2365 2.0749
14 8 2.4914 -2.3578 2.7260
15 6 3.9947 -4.1633 2.7222
16 8 4.5208 -5.0417 2.0710
17 7 4.2918 -4.0235 4.0295
18 6 5.2496 -4.9323 4.6642
19 6 5.4053 -4.5597 6.1399
20 6 5.9157 -3.1217 6.2516
21 6 4.0504 -4.6759 6.8410
22 6 6.3910 -5.4942 6.7927
23 1 6.8802 -6.2582 6.2068
24 6 6.6681 -5.3739 8.1380
25 7 7.7161 -5.9812 8.6504
26 14 5.5549 -4.3485 9.2328
27 1 4.4037 -5.1733 9.6796
28 1 6.3191 -3.8820 10.4176
29 1 5.0568 -3.1747 8.4716
30 1 -0.3634 -0.0893 1.0237
31 1 -0.3633 0.9313 -0.4345
32 1 -0.3633 -0.8419 -0.5894
33 1 1.9172 2.1324 -0.0004
34 1 4.4165 1.3435 -0.0118
35 1 4.4165 -1.3439 -0.0063
36 1 0.7296 -3.0591 -1.8309
37 1 2.4210 -2.5191 -2.0780
38 1 1.4176 -5.1973 -0.9559
39 1 2.6961 -4.9115 -2.1837
40 1 4.2373 -4.0451 -0.5483
41 1 3.4225 -5.3361 0.3868
42 1 3.8715 -3.3211 4.5499
43 1 6.2147 -4.8499 4.1645
44 1 4.8858 -5.9568 4.5849
45 1 6.1669 -2.9049 7.2900
46 1 5.1405 -2.4337 5.9141
47 1 6.8033 -3.0019 5.6305
48 1 3.3377 -3.9997 6.3687
49 1 3.6867 -5.7003 6.7613
50 1 4.1611 -4.4100 7.8922
51 1 7.9112 -5.8962 9.5968
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000422487792.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:41:56
Heat of formation + Delta-G solvation = 11.055502 kcal
Electronic energy + Delta-G solvation = -31685.979780 eV
Core-core repulsion = 27587.612402 eV
Total energy + Delta-G solvation = -4098.367377 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.60876 -40.42541 -38.76944 -37.48544 -36.77209 -33.43608 -33.02108 -31.83578
-31.47593 -31.00384 -27.20989 -26.87389 -26.54937 -26.35547 -25.18878 -24.43855
-22.34295 -21.65238 -20.71060 -20.11275 -19.37050 -18.78964 -17.74964 -17.21120
-16.93209 -16.16802 -15.91209 -15.53279 -15.43497 -15.14286 -14.92346 -14.43259
-14.15330 -13.91800 -13.73853 -13.46431 -13.21351 -13.18685 -13.05081 -12.89048
-12.67763 -12.58974 -12.56339 -12.22471 -12.17637 -12.06417 -12.00640 -11.75896
-11.65269 -11.34359 -11.11736 -11.00533 -10.47655 -10.30751 -10.18169 -10.06713
-9.33645 -9.10965 -8.99581 -8.68709 -8.67427 -8.67003 -8.45843 -8.07549
-6.15644 -4.13011 1.62568 2.02094 2.39224 2.84450 2.98261 3.25976
3.33829 3.40164 3.42845 3.70170 4.21133 4.32237 4.36144 4.44492
4.48168 4.68174 4.79836 4.85174 4.87150 5.01029 5.09039 5.15414
5.17386 5.40153 5.45136 5.53458 5.56730 5.68534 5.71165 5.73233
5.88515 6.00439 6.01885 6.05892 6.21343 6.27780 6.36138 6.42229
6.51256 6.59788 6.64843 6.69110 6.90823 6.93202 7.08541 7.17792
7.19091 7.24067 7.40999 7.52728 7.70990 7.91712 8.28241 8.43924
8.88970 9.48515 10.97249
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016320 B = 0.002697 C = 0.002488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1715.239797 B =10380.736649 C =11253.427574
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.444 5.444
3 C -0.014 4.014
4 C -0.198 4.198
5 C -0.178 4.178
6 C 0.011 3.989
7 C 0.209 3.791
8 H 0.079 0.921
9 C -0.123 4.123
10 C -0.135 4.135
11 C 0.097 3.903
12 N -0.585 5.585
13 C 0.524 3.476
14 O -0.513 6.513
15 C 0.502 3.498
16 O -0.526 6.526
17 N -0.687 5.687
18 C 0.140 3.860
19 C 0.029 3.971
20 C -0.144 4.144
21 C -0.151 4.151
22 C -0.514 4.514
23 H 0.078 0.922
24 C 0.077 3.923
25 N -0.890 5.890
26 Si 0.884 3.116
27 H -0.285 1.285
28 H -0.305 1.305
29 H -0.249 1.249
30 H 0.072 0.928
31 H 0.083 0.917
32 H 0.078 0.922
33 H 0.160 0.840
34 H 0.134 0.866
35 H 0.128 0.872
36 H 0.082 0.918
37 H 0.084 0.916
38 H 0.078 0.922
39 H 0.088 0.912
40 H 0.074 0.926
41 H 0.107 0.893
42 H 0.409 0.591
43 H 0.070 0.930
44 H 0.069 0.931
45 H 0.057 0.943
46 H 0.024 0.976
47 H 0.048 0.952
48 H 0.031 0.969
49 H 0.054 0.946
50 H 0.043 0.957
51 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.998 10.080 -22.223 29.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.120 5.120
3 C -0.144 4.144
4 C -0.223 4.223
5 C -0.202 4.202
6 C -0.101 4.101
7 C 0.104 3.896
8 H 0.097 0.903
9 C -0.161 4.161
10 C -0.173 4.173
11 C -0.025 4.025
12 N -0.320 5.320
13 C 0.307 3.693
14 O -0.387 6.387
15 C 0.282 3.718
16 O -0.403 6.403
17 N -0.339 5.339
18 C 0.018 3.982
19 C 0.028 3.972
20 C -0.201 4.201
21 C -0.208 4.208
22 C -0.552 4.552
23 H 0.096 0.904
24 C -0.126 4.126
25 N -0.526 5.526
26 Si 0.717 3.283
27 H -0.213 1.213
28 H -0.234 1.234
29 H -0.175 1.175
30 H 0.091 0.909
31 H 0.102 0.898
32 H 0.097 0.903
33 H 0.177 0.823
34 H 0.152 0.848
35 H 0.146 0.854
36 H 0.100 0.900
37 H 0.103 0.897
38 H 0.096 0.904
39 H 0.107 0.893
40 H 0.092 0.908
41 H 0.125 0.875
42 H 0.246 0.754
43 H 0.088 0.912
44 H 0.087 0.913
45 H 0.075 0.925
46 H 0.043 0.957
47 H 0.067 0.933
48 H 0.050 0.950
49 H 0.073 0.927
50 H 0.062 0.938
51 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -16.130 9.873 -22.038 29.041
hybrid contribution -0.739 0.982 1.121 1.663
sum -16.869 10.856 -20.917 28.982
Atomic orbital electron populations
1.21988 0.77746 1.03932 1.03326 1.43750 1.05794 1.05564 1.56893
1.21732 0.90539 0.91039 1.11091 1.20858 0.95946 0.95026 1.10484
1.20546 0.95056 0.94989 1.09657 1.20272 0.90741 0.87965 1.11103
1.19794 0.92582 0.84883 0.92304 0.90295 1.22728 1.02786 0.96494
0.94081 1.22910 0.99156 0.96046 0.99199 1.22738 0.96144 0.93274
0.90296 1.48176 1.43525 1.32438 1.07890 1.20135 0.83056 0.84946
0.81170 1.90757 1.51908 1.33667 1.62353 1.19832 0.83291 0.85054
0.83628 1.90683 1.52509 1.34302 1.62850 1.46189 1.43976 1.34952
1.08738 1.21715 0.90735 0.91938 0.93827 1.18733 0.93717 0.94557
0.90227 1.22300 0.99301 0.96726 1.01821 1.22403 0.98015 1.00586
0.99801 1.20679 1.23226 1.16819 0.94466 0.90439 1.24952 0.94446
0.95097 0.98083 1.69950 1.24916 1.44237 1.13533 0.87300 0.80067
0.81739 0.79195 1.21304 1.23365 1.17474 0.90902 0.89776 0.90286
0.82274 0.84819 0.85402 0.89965 0.89703 0.90363 0.89346 0.90767
0.87512 0.75450 0.91165 0.91297 0.92458 0.95727 0.93271 0.94988
0.92704 0.93848 0.92516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.46 10.63 59.85 0.64 1.10 16
2 N -0.44 -4.63 3.15 -119.90 -0.38 -5.00 16
3 C -0.01 -0.15 11.42 -16.75 -0.19 -0.34 16
4 C -0.20 -2.42 10.86 -39.78 -0.43 -2.85 16
5 C -0.18 -2.37 10.19 -39.78 -0.41 -2.77 16
6 C 0.01 0.13 5.06 -81.79 -0.41 -0.28 16
7 C 0.21 2.18 2.93 -68.11 -0.20 1.98 16
8 H 0.08 0.81 7.66 -51.93 -0.40 0.41 16
9 C -0.12 -0.87 6.46 -24.90 -0.16 -1.03 16
10 C -0.14 -0.93 7.10 -24.46 -0.17 -1.10 16
11 C 0.10 1.02 6.08 -2.41 -0.01 1.00 16
12 N -0.59 -7.37 2.73 -164.69 -0.45 -7.82 16
13 C 0.52 8.26 7.55 -11.59 -0.09 8.17 16
14 O -0.51 -9.13 16.31 5.49 0.09 -9.04 16
15 C 0.50 8.57 7.86 -11.58 -0.09 8.48 16
16 O -0.53 -9.47 13.77 5.50 0.08 -9.40 16
17 N -0.69 -12.15 5.00 -60.73 -0.30 -12.46 16
18 C 0.14 2.78 4.50 -4.04 -0.02 2.76 16
19 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16
20 C -0.14 -3.04 7.57 37.16 0.28 -2.76 16
21 C -0.15 -3.16 7.49 37.16 0.28 -2.88 16
22 C -0.51 -13.75 8.62 -34.44 -0.30 -14.05 16
23 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16
24 C 0.08 2.15 5.32 -17.82 -0.09 2.05 16
25 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16
26 Si 0.88 21.35 22.83 -169.99 -3.88 17.47 16
27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16
28 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16
29 H -0.25 -5.55 4.65 56.52 0.26 -5.29 16
30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16
32 H 0.08 0.38 7.81 -51.93 -0.41 -0.02 16
33 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16
34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16
35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16
36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
37 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16
38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.11 1.28 6.14 -51.93 -0.32 0.96 16
42 H 0.41 7.06 5.71 -40.82 -0.23 6.83 16
43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
45 H 0.06 1.28 4.37 -51.92 -0.23 1.05 16
46 H 0.02 0.45 7.10 -51.93 -0.37 0.08 16
47 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16
48 H 0.03 0.58 6.86 -51.93 -0.36 0.22 16
49 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
50 H 0.04 0.96 2.18 -51.93 -0.11 0.84 16
51 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 394.29 15.07 5.94 5.94
Total: -1.00 -32.89 394.29 -7.61 -40.50
By element:
Atomic # 1 Polarization: 15.59 SS G_CDS: -8.02 Total: 7.57 kcal
Atomic # 6 Polarization: -0.51 SS G_CDS: -1.46 Total: -1.97 kcal
Atomic # 7 Polarization: -50.73 SS G_CDS: -0.36 Total: -51.08 kcal
Atomic # 8 Polarization: -18.60 SS G_CDS: 0.17 Total: -18.43 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -3.88 Total: 17.47 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -32.89 -7.61 -40.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000422487792.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.553 kcal
(2) G-P(sol) polarization free energy of solvation -32.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds