Wall clock time and date at job start Wed Apr 1 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63941 * 2 1 4 4 C 1.34848 * 108.21950 * 180.26466 * 3 2 1 5 5 C 1.40898 * 107.41670 * 359.72829 * 4 3 2 6 6 C 1.34851 * 107.41882 * 0.02562 * 5 4 3 7 7 C 1.50693 * 125.89090 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.99871 * 154.60177 * 7 6 5 9 9 C 1.54320 * 109.88137 * 275.69294 * 7 6 5 10 10 C 1.55154 * 102.94392 * 141.61206 * 9 7 6 11 11 C 1.55133 * 101.48402 * 324.33591 * 10 9 7 12 12 N 1.47018 * 109.88323 * 33.50537 * 7 6 5 13 13 C 1.34775 * 125.65262 * 61.60754 * 12 7 6 14 14 O 1.21353 * 119.99486 * 359.97438 * 13 12 7 15 15 C 1.49447 * 120.00105 * 180.02562 * 13 12 7 16 16 O 1.21346 * 120.00065 * 359.97438 * 15 13 12 17 17 N 1.34784 * 119.99521 * 179.97438 * 15 13 12 18 18 C 1.46507 * 119.99568 * 179.97438 * 17 15 13 19 19 C 1.52991 * 109.46895 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47103 * 299.99848 * 19 18 17 21 21 C 1.52998 * 109.47645 * 60.00127 * 19 18 17 22 22 C 1.50706 * 109.47059 * 180.02562 * 19 18 17 23 23 H 1.07993 * 119.99869 * 1.70542 * 22 19 18 24 24 C 1.37883 * 119.99996 * 181.71386 * 22 19 18 25 25 N 1.31512 * 119.99765 * 194.43840 * 24 22 19 26 26 Si 1.86796 * 120.00038 * 14.43665 * 24 22 19 27 27 H 1.48500 * 109.47215 * 84.56429 * 26 24 22 28 28 H 1.48496 * 109.47162 * 204.56865 * 26 24 22 29 29 H 1.48505 * 109.47467 * 324.56797 * 26 24 22 30 30 H 1.08996 * 109.47455 * 265.01268 * 1 2 3 31 31 H 1.08999 * 109.47052 * 25.01223 * 1 2 3 32 32 H 1.09006 * 109.47091 * 145.00626 * 1 2 3 33 33 H 1.07998 * 125.88767 * 359.97437 * 3 2 1 34 34 H 1.07996 * 126.29239 * 179.71754 * 4 3 2 35 35 H 1.08000 * 126.29145 * 180.02562 * 5 4 3 36 36 H 1.09002 * 110.72231 * 259.97538 * 9 7 6 37 37 H 1.08995 * 110.72210 * 23.07322 * 9 7 6 38 38 H 1.09005 * 111.00380 * 82.56910 * 10 9 7 39 39 H 1.09000 * 111.01142 * 206.38853 * 10 9 7 40 40 H 1.09001 * 110.49380 * 278.45096 * 11 10 9 41 41 H 1.09002 * 110.34648 * 156.05760 * 11 10 9 42 42 H 0.96994 * 120.00382 * 359.97438 * 17 15 13 43 43 H 1.08995 * 109.47191 * 59.99815 * 18 17 15 44 44 H 1.09000 * 109.46945 * 300.00185 * 18 17 15 45 45 H 1.09009 * 109.47373 * 188.31902 * 20 19 18 46 46 H 1.09000 * 109.47223 * 68.31909 * 20 19 18 47 47 H 1.08998 * 109.47248 * 308.31575 * 20 19 18 48 48 H 1.09007 * 109.46841 * 300.00182 * 21 19 18 49 49 H 1.09000 * 109.47043 * 59.99468 * 21 19 18 50 50 H 1.08997 * 109.47736 * 180.02562 * 21 19 18 51 51 H 0.97000 * 119.99633 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0059 5 6 3.5460 -0.7046 -0.0033 6 6 2.2593 -1.1082 0.0035 7 6 1.7818 -2.5375 0.0078 8 1 0.7883 -2.5972 0.4521 9 6 1.7450 -3.0829 -1.4353 10 6 2.2342 -4.5456 -1.2666 11 6 3.2881 -4.3907 -0.1388 12 7 2.7205 -3.3760 0.7676 13 6 3.0172 -3.2365 2.0749 14 8 2.4914 -2.3578 2.7260 15 6 3.9947 -4.1633 2.7222 16 8 4.5208 -5.0417 2.0710 17 7 4.2918 -4.0235 4.0295 18 6 5.2496 -4.9323 4.6642 19 6 5.4053 -4.5597 6.1399 20 6 5.9157 -3.1217 6.2516 21 6 4.0504 -4.6759 6.8410 22 6 6.3910 -5.4942 6.7927 23 1 6.8802 -6.2582 6.2068 24 6 6.6681 -5.3739 8.1380 25 7 7.7161 -5.9812 8.6504 26 14 5.5549 -4.3485 9.2328 27 1 4.4037 -5.1733 9.6796 28 1 6.3191 -3.8820 10.4176 29 1 5.0568 -3.1747 8.4716 30 1 -0.3634 -0.0893 1.0237 31 1 -0.3633 0.9313 -0.4345 32 1 -0.3633 -0.8419 -0.5894 33 1 1.9172 2.1324 -0.0004 34 1 4.4165 1.3435 -0.0118 35 1 4.4165 -1.3439 -0.0063 36 1 0.7296 -3.0591 -1.8309 37 1 2.4210 -2.5191 -2.0780 38 1 1.4176 -5.1973 -0.9559 39 1 2.6961 -4.9115 -2.1837 40 1 4.2373 -4.0451 -0.5483 41 1 3.4225 -5.3361 0.3868 42 1 3.8715 -3.3211 4.5499 43 1 6.2147 -4.8499 4.1645 44 1 4.8858 -5.9568 4.5849 45 1 6.1669 -2.9049 7.2900 46 1 5.1405 -2.4337 5.9141 47 1 6.8033 -3.0019 5.6305 48 1 3.3377 -3.9997 6.3687 49 1 3.6867 -5.7003 6.7613 50 1 4.1611 -4.4100 7.8922 51 1 7.9112 -5.8962 9.5968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422487792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:55 Heat of formation + Delta-G solvation = -10.596135 kcal Electronic energy + Delta-G solvation = -31686.918665 eV Core-core repulsion = 27587.612402 eV Total energy + Delta-G solvation = -4099.306263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.48235 -41.60542 -39.99801 -38.57625 -38.42310 -35.11375 -33.73361 -33.48124 -32.71975 -31.79572 -28.39729 -28.04994 -28.00266 -27.17274 -27.10547 -25.78146 -23.43925 -22.35237 -21.67563 -21.23494 -20.96761 -19.87204 -18.88033 -18.27888 -18.05361 -17.97801 -17.22159 -16.98732 -16.60433 -16.27287 -16.08630 -15.64088 -15.35335 -15.01829 -14.89481 -14.57037 -14.51928 -14.41326 -14.25817 -14.07565 -13.98956 -13.83793 -13.78392 -13.45130 -13.20374 -13.01381 -12.90795 -12.90552 -12.74315 -12.41714 -12.37311 -12.22307 -12.01482 -11.96977 -11.81448 -11.67688 -11.11505 -10.65032 -10.60127 -10.41281 -10.23830 -9.96045 -9.49969 -8.92346 -8.31808 -6.32763 0.32978 1.06810 1.35322 1.37321 1.39425 1.48666 2.04137 2.08159 2.16608 2.33059 2.53514 3.04033 3.29049 3.54248 3.65435 3.75084 3.99305 4.03408 4.06189 4.18457 4.26979 4.32191 4.35560 4.42596 4.49707 4.64232 4.67092 4.69295 4.71985 4.76223 4.80197 4.83680 4.86384 4.88162 4.92036 5.01030 5.03019 5.09428 5.14589 5.28032 5.31800 5.36944 5.39031 5.44303 5.65561 5.72994 5.95224 6.08418 6.21888 6.27485 6.29249 6.51610 6.64383 6.72297 6.92905 7.32100 8.84911 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.002697 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.239797 B =10380.736649 C =11253.427574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.444 5.444 3 C -0.009 4.009 4 C -0.228 4.228 5 C -0.210 4.210 6 C 0.006 3.994 7 C 0.202 3.798 8 H 0.086 0.914 9 C -0.111 4.111 10 C -0.121 4.121 11 C 0.089 3.911 12 N -0.578 5.578 13 C 0.524 3.476 14 O -0.537 6.537 15 C 0.502 3.498 16 O -0.538 6.538 17 N -0.684 5.684 18 C 0.155 3.845 19 C 0.028 3.972 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.515 4.515 23 H 0.037 0.963 24 C 0.023 3.977 25 N -0.942 5.942 26 Si 0.940 3.060 27 H -0.280 1.280 28 H -0.314 1.314 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.191 0.809 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.413 0.587 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.036 0.964 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.673 11.949 -24.101 33.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.120 5.120 3 C -0.140 4.140 4 C -0.253 4.253 5 C -0.235 4.235 6 C -0.107 4.107 7 C 0.099 3.901 8 H 0.104 0.896 9 C -0.149 4.149 10 C -0.159 4.159 11 C -0.033 4.033 12 N -0.311 5.311 13 C 0.307 3.693 14 O -0.414 6.414 15 C 0.283 3.717 16 O -0.416 6.416 17 N -0.336 5.336 18 C 0.032 3.968 19 C 0.027 3.973 20 C -0.200 4.200 21 C -0.207 4.207 22 C -0.553 4.553 23 H 0.055 0.945 24 C -0.175 4.175 25 N -0.581 5.581 26 Si 0.770 3.230 27 H -0.207 1.207 28 H -0.243 1.243 29 H -0.138 1.138 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.208 0.792 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.251 0.749 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.055 0.945 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.847 11.747 -23.986 33.275 hybrid contribution 0.462 0.339 1.557 1.659 sum -19.385 12.086 -22.429 32.014 Atomic orbital electron populations 1.22305 0.75247 1.06320 1.03809 1.44048 1.07355 1.04902 1.55678 1.22210 0.90042 0.92425 1.09312 1.21086 0.97297 0.94814 1.12054 1.20577 0.95417 0.95628 1.11866 1.20413 0.90628 0.89041 1.10645 1.20137 0.91925 0.84020 0.94028 0.89566 1.22740 1.04656 0.95898 0.91619 1.22902 0.98243 0.96332 0.98440 1.22883 0.97514 0.91845 0.91017 1.48284 1.43018 1.32729 1.07097 1.19739 0.82833 0.84451 0.82280 1.90736 1.52939 1.34510 1.63225 1.20177 0.83279 0.85028 0.83254 1.90684 1.52967 1.34892 1.63090 1.45980 1.43745 1.34757 1.09148 1.21302 0.90715 0.92031 0.92763 1.18662 0.93500 0.94075 0.91106 1.22229 1.00166 0.96374 1.01216 1.22338 0.97513 1.01591 0.99258 1.20951 1.23515 1.16448 0.94390 0.94478 1.25753 0.95572 0.96618 0.99604 1.70092 1.27204 1.46887 1.13888 0.86387 0.78064 0.81522 0.77062 1.20716 1.24315 1.13811 0.91236 0.87171 0.88372 0.79206 0.84474 0.87249 0.86789 0.89955 0.89215 0.87082 0.91174 0.89171 0.74888 0.92605 0.92083 0.93428 0.92721 0.93697 0.91782 0.92739 0.94540 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.63 127.77 1.36 1.95 16 2 N -0.44 -8.18 3.15 -533.25 -1.68 -9.86 16 3 C -0.01 -0.18 11.42 83.21 0.95 0.77 16 4 C -0.23 -5.48 10.86 22.14 0.24 -5.24 16 5 C -0.21 -5.60 10.19 22.14 0.23 -5.38 16 6 C 0.01 0.13 5.06 41.08 0.21 0.34 16 7 C 0.20 3.78 2.93 44.59 0.13 3.91 16 8 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 9 C -0.11 -1.20 6.46 31.78 0.21 -0.99 16 10 C -0.12 -1.30 7.10 32.06 0.23 -1.07 16 11 C 0.09 1.76 6.08 86.93 0.53 2.29 16 12 N -0.58 -13.97 2.73 -793.33 -2.17 -16.13 16 13 C 0.52 16.21 7.55 87.27 0.66 16.87 16 14 O -0.54 -18.60 16.31 -3.26 -0.05 -18.66 16 15 C 0.50 17.03 7.86 87.27 0.69 17.72 16 16 O -0.54 -19.57 13.77 -3.24 -0.04 -19.62 16 17 N -0.68 -23.69 5.00 -464.41 -2.32 -26.01 16 18 C 0.15 6.19 4.50 86.37 0.39 6.58 16 19 C 0.03 1.21 0.50 -52.93 -0.03 1.18 16 20 C -0.14 -5.80 7.57 71.98 0.55 -5.26 16 21 C -0.15 -5.94 7.49 71.98 0.54 -5.40 16 22 C -0.51 -28.29 8.62 25.60 0.22 -28.07 16 23 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 24 C 0.02 1.28 5.32 84.66 0.45 1.73 16 25 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 26 Si 0.94 43.70 22.83 68.60 1.57 45.27 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 29 H -0.21 -8.73 4.65 99.48 0.46 -8.27 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.46 8.12 -2.39 -0.02 0.44 16 32 H 0.10 0.54 7.81 -2.38 -0.02 0.52 16 33 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.11 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.99 7.84 -2.39 -0.02 0.97 16 38 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 2.12 6.14 -2.39 -0.01 2.11 16 42 H 0.41 13.54 5.71 -92.71 -0.53 13.01 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.05 2.02 4.37 -2.38 -0.01 2.01 16 46 H 0.05 1.89 7.10 -2.39 -0.02 1.87 16 47 H 0.04 1.83 8.13 -2.39 -0.02 1.81 16 48 H 0.06 2.12 6.86 -2.38 -0.02 2.10 16 49 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.04 1.50 2.18 -2.39 -0.01 1.49 16 51 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -74.52 394.29 3.31 -71.21 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.17 Total: 29.82 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 7.54 Total: 1.94 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -5.86 Total: -109.96 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.10 Total: -38.28 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.57 Total: 45.27 kcal Total: -74.52 3.31 -71.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.615 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds