Wall clock time and date at job start Wed Apr 1 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47329 * 2 1 4 4 C 1.50704 * 109.46840 * 239.99955 * 2 1 3 5 5 H 1.08000 * 120.00323 * 241.34596 * 4 2 1 6 6 C 1.37879 * 119.99713 * 61.35086 * 4 2 1 7 7 N 1.31518 * 119.99406 * 193.97569 * 6 4 2 8 8 Si 1.86800 * 120.00380 * 13.97479 * 6 4 2 9 9 H 1.48496 * 109.47297 * 84.54858 * 8 6 4 10 10 H 1.48504 * 109.46982 * 204.55099 * 8 6 4 11 11 H 1.48501 * 109.46658 * 324.54560 * 8 6 4 12 12 C 1.52996 * 109.46872 * 120.00314 * 2 1 3 13 13 N 1.46500 * 109.46983 * 299.99537 * 12 2 1 14 14 C 1.34784 * 119.99739 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99925 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99615 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00403 * 0.02562 * 16 14 13 18 18 C 1.52999 * 109.47255 * 270.00031 * 17 16 14 19 19 C 1.50705 * 109.47281 * 179.97438 * 18 17 16 20 20 N 1.34767 * 120.00003 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99695 * 359.97438 * 19 18 17 22 22 C 1.46502 * 119.99931 * 180.02562 * 16 14 13 23 23 C 1.50697 * 109.46896 * 90.00208 * 22 16 14 24 24 C 1.38231 * 120.00364 * 90.00475 * 23 22 16 25 25 C 1.38226 * 120.00578 * 179.97438 * 24 23 22 26 26 C 1.38237 * 120.00073 * 359.97438 * 25 24 23 27 27 C 1.38241 * 119.99735 * 0.27769 * 26 25 24 28 28 C 1.38236 * 119.99927 * 269.97868 * 23 22 16 29 29 H 1.09002 * 109.47122 * 309.37082 * 1 2 3 30 30 H 1.09007 * 109.47128 * 69.36520 * 1 2 3 31 31 H 1.08994 * 109.47681 * 189.36595 * 1 2 3 32 32 H 1.08997 * 109.47354 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47394 * 300.00054 * 3 2 1 34 34 H 1.09003 * 109.47117 * 60.00151 * 3 2 1 35 35 H 0.97004 * 119.99888 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.46644 * 180.02562 * 12 2 1 37 37 H 1.08995 * 109.47526 * 60.00209 * 12 2 1 38 38 H 0.96995 * 119.99914 * 0.02562 * 13 12 2 39 39 H 1.09010 * 109.47007 * 29.99713 * 17 16 14 40 40 H 1.09001 * 109.47172 * 149.99620 * 17 16 14 41 41 H 1.08996 * 109.46831 * 299.99669 * 18 17 16 42 42 H 1.09001 * 109.47366 * 59.99707 * 18 17 16 43 43 H 0.97000 * 120.00280 * 359.97438 * 20 19 18 44 44 H 0.97004 * 120.00123 * 179.97438 * 20 19 18 45 45 H 1.09001 * 109.46928 * 330.00394 * 22 16 14 46 46 H 1.08996 * 109.47457 * 210.00297 * 22 16 14 47 47 H 1.08007 * 119.99843 * 359.97363 * 24 23 22 48 48 H 1.07997 * 120.00255 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.00226 * 180.02562 * 26 25 24 50 50 H 1.08001 * 119.99975 * 179.72514 * 27 26 25 51 51 H 1.08004 * 120.00335 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6351 -1.6011 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9726 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4817 -2.7084 10 1 0.2469 1.5866 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5773 -1.4790 3.7810 16 7 1.4289 0.1447 4.7699 17 6 0.5863 1.3356 4.6356 18 6 1.4705 2.5833 4.5878 19 6 0.6038 3.8083 4.4490 20 7 1.1690 5.0301 4.3868 21 8 -0.6024 3.6945 4.3932 22 6 1.7836 -0.3551 6.1005 23 6 3.0651 0.2941 6.5557 24 6 3.0253 1.4796 7.2655 25 6 4.2007 2.0748 7.6836 26 6 5.4161 1.4843 7.3923 27 6 5.4564 0.3015 6.6780 28 6 4.2806 -0.2962 6.2640 29 1 -0.3633 0.6519 0.7945 30 1 -0.3634 0.3622 -0.9618 31 1 -0.3634 -1.0139 0.1672 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6979 -0.6298 -4.4269 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9938 0.7578 2.3563 39 1 0.0045 1.2672 3.7163 40 1 -0.0889 1.4011 5.4888 41 1 2.0522 2.6517 5.5070 42 1 2.1456 2.5177 3.7346 43 1 2.1336 5.1212 4.4317 44 1 0.6111 5.8186 4.2970 45 1 1.9189 -1.4359 6.0584 46 1 0.9856 -0.1159 6.8033 47 1 2.0756 1.9408 7.4935 48 1 4.1695 3.0013 8.2377 49 1 6.3345 1.9492 7.7193 50 1 6.4062 -0.1576 6.4466 51 1 4.3118 -1.2229 5.7102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457572858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:08 Heat of formation + Delta-G solvation = -26.993971 kcal Electronic energy + Delta-G solvation = -32000.014973 eV Core-core repulsion = 27899.997646 eV Total energy + Delta-G solvation = -4100.017326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.53445 -39.51045 -39.07445 -36.95057 -35.73340 -33.93338 -33.52347 -32.21422 -31.37655 -31.07539 -30.48987 -26.84732 -26.37541 -25.48091 -24.88158 -24.09337 -22.70030 -21.62834 -20.73387 -19.63594 -19.26160 -18.00353 -17.66304 -17.14857 -16.68175 -16.24790 -15.97827 -15.70057 -15.35859 -15.30575 -15.03837 -14.89923 -14.19634 -13.98720 -13.74569 -13.56063 -13.46065 -13.27453 -13.06671 -12.95364 -12.72074 -12.58779 -12.43894 -12.20430 -12.03982 -12.00297 -11.42298 -11.33343 -11.24876 -11.08808 -10.41468 -10.30783 -10.27872 -10.16186 -10.05462 -9.97375 -9.83003 -9.13112 -9.04318 -8.97044 -8.80188 -8.67646 -8.47438 -8.31291 -6.14110 -4.11123 1.12572 1.26424 2.38356 2.76958 3.24504 3.31074 3.31990 3.39137 3.50099 3.71858 4.21485 4.36231 4.55494 4.65284 4.67587 4.71154 4.83625 4.89686 4.97217 5.12543 5.16771 5.27603 5.34170 5.40008 5.51080 5.59117 5.74403 5.77125 5.84829 5.93114 6.05372 6.08917 6.28038 6.31023 6.39263 6.40116 6.47839 6.50282 6.53741 6.56422 6.64579 6.70248 6.83541 6.86647 6.99805 7.01212 7.11616 7.25083 7.44413 7.73842 7.97778 8.23631 8.46931 8.89055 8.92583 9.50028 10.98980 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.003440 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.601905 B = 8137.012924 C = 9363.768901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.145 4.145 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.287 1.287 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.160 3.840 13 N -0.738 5.738 14 C 0.703 3.297 15 O -0.588 6.588 16 N -0.629 5.629 17 C 0.128 3.872 18 C -0.172 4.172 19 C 0.522 3.478 20 N -0.856 5.856 21 O -0.543 6.543 22 C 0.171 3.829 23 C -0.102 4.102 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.122 4.122 28 C -0.090 4.090 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.392 0.608 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.402 0.598 44 H 0.401 0.599 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 11.005 23.693 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 C -0.202 4.202 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.037 3.963 13 N -0.393 5.393 14 C 0.404 3.596 15 O -0.466 6.466 16 N -0.365 5.365 17 C 0.004 3.996 18 C -0.214 4.214 19 C 0.306 3.694 20 N -0.420 5.420 21 O -0.420 6.420 22 C 0.048 3.952 23 C -0.104 4.104 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.140 4.140 28 C -0.108 4.108 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.228 0.772 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.230 0.770 44 H 0.232 0.768 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.819 9.915 23.493 25.564 hybrid contribution -0.125 2.025 -0.414 2.070 sum 1.694 11.939 23.079 26.039 Atomic orbital electron populations 1.22288 0.97832 0.99868 0.99879 1.18726 0.92516 0.92178 0.93829 1.22339 1.01075 0.98427 0.98353 1.20710 1.34012 1.12301 0.87931 0.90482 1.24960 0.94656 0.97236 0.95800 1.69954 1.48229 1.35871 0.98709 0.87318 0.79331 0.85631 0.76053 1.21431 1.23382 1.17505 1.21383 0.98287 0.95519 0.81146 1.45697 1.55629 1.33187 1.04808 1.15964 0.80285 0.82787 0.80533 1.90875 1.42585 1.27547 1.85625 1.47179 1.54710 1.29656 1.04974 1.21199 0.91569 0.82470 1.04392 1.22335 0.99959 0.93240 1.05848 1.20594 0.88738 0.85160 0.74889 1.43891 1.11914 1.08559 1.77612 1.90772 1.14968 1.86728 1.49513 1.20217 0.93000 0.99658 0.82370 1.20342 0.95931 0.95813 0.98313 1.21009 0.98098 0.95376 0.98723 1.21071 0.92619 1.00075 1.00872 1.21154 0.97771 0.96007 0.98879 1.21225 0.98435 0.95974 0.98415 1.21317 0.91685 1.00346 0.97463 0.96084 0.92577 0.93329 0.92820 0.94090 0.95543 0.92577 0.92194 0.92030 0.77193 0.89765 0.89333 0.87733 0.88294 0.76966 0.76840 0.88686 0.89888 0.86364 0.86382 0.86404 0.86152 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.53 37.16 0.28 -2.67 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -2.95 7.52 37.16 0.28 -2.67 16 4 C -0.51 -13.74 8.62 -34.44 -0.30 -14.04 16 5 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 6 C 0.08 2.12 5.32 -17.82 -0.09 2.02 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 8 Si 0.88 21.23 22.79 -169.99 -3.87 17.36 16 9 H -0.29 -6.83 7.10 56.52 0.40 -6.42 16 10 H -0.31 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.25 -5.50 4.65 56.52 0.26 -5.24 16 12 C 0.16 3.22 4.49 -4.04 -0.02 3.20 16 13 N -0.74 -12.33 4.87 -65.23 -0.32 -12.65 16 14 C 0.70 11.49 8.28 -86.91 -0.72 10.77 16 15 O -0.59 -11.49 15.45 5.29 0.08 -11.41 16 16 N -0.63 -7.69 2.46 -180.80 -0.44 -8.13 16 17 C 0.13 1.36 4.50 -4.04 -0.02 1.34 16 18 C -0.17 -1.58 6.02 -27.88 -0.17 -1.75 16 19 C 0.52 5.20 8.10 -10.99 -0.09 5.12 16 20 N -0.86 -5.58 8.87 31.22 0.28 -5.30 16 21 O -0.54 -7.55 16.82 5.55 0.09 -7.45 16 22 C 0.17 1.79 5.58 -5.19 -0.03 1.76 16 23 C -0.10 -1.06 5.39 -104.63 -0.56 -1.62 16 24 C -0.11 -0.96 7.54 -39.59 -0.30 -1.26 16 25 C -0.13 -1.03 10.05 -39.59 -0.40 -1.43 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.09 -1.04 9.70 -39.58 -0.38 -1.42 16 29 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 30 H 0.06 1.24 4.30 -51.92 -0.22 1.02 16 31 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 34 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.39 6.02 3.99 -40.82 -0.16 5.85 16 39 H 0.08 1.01 6.32 -51.92 -0.33 0.68 16 40 H 0.09 0.83 7.85 -51.93 -0.41 0.42 16 41 H 0.10 0.82 5.26 -51.93 -0.27 0.54 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 44 H 0.40 2.29 8.93 -40.82 -0.36 1.93 16 45 H 0.09 1.13 7.36 -51.93 -0.38 0.75 16 46 H 0.08 0.65 7.84 -51.93 -0.41 0.25 16 47 H 0.12 0.80 7.73 -52.48 -0.41 0.39 16 48 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.13 1.74 7.58 -52.48 -0.40 1.34 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -33.88 396.70 -8.45 -42.34 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.63 Total: 10.34 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.39 Total: -5.17 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.29 Total: -51.98 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.18 Total: -18.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -3.87 Total: 17.36 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.88 -8.45 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457572858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.343 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds