Wall clock time and date at job start Wed Apr 1 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47329 * 2 1 4 4 C 1.50704 * 109.46840 * 239.99955 * 2 1 3 5 5 H 1.08000 * 120.00323 * 241.34596 * 4 2 1 6 6 C 1.37879 * 119.99713 * 61.35086 * 4 2 1 7 7 N 1.31518 * 119.99406 * 193.97569 * 6 4 2 8 8 Si 1.86800 * 120.00380 * 13.97479 * 6 4 2 9 9 H 1.48496 * 109.47297 * 84.54858 * 8 6 4 10 10 H 1.48504 * 109.46982 * 204.55099 * 8 6 4 11 11 H 1.48501 * 109.46658 * 324.54560 * 8 6 4 12 12 C 1.52996 * 109.46872 * 120.00314 * 2 1 3 13 13 N 1.46500 * 109.46983 * 299.99537 * 12 2 1 14 14 C 1.34784 * 119.99739 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99925 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99615 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00403 * 0.02562 * 16 14 13 18 18 C 1.52999 * 109.47255 * 270.00031 * 17 16 14 19 19 C 1.50705 * 109.47281 * 179.97438 * 18 17 16 20 20 N 1.34767 * 120.00003 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99695 * 359.97438 * 19 18 17 22 22 C 1.46502 * 119.99931 * 180.02562 * 16 14 13 23 23 C 1.50697 * 109.46896 * 90.00208 * 22 16 14 24 24 C 1.38231 * 120.00364 * 90.00475 * 23 22 16 25 25 C 1.38226 * 120.00578 * 179.97438 * 24 23 22 26 26 C 1.38237 * 120.00073 * 359.97438 * 25 24 23 27 27 C 1.38241 * 119.99735 * 0.27769 * 26 25 24 28 28 C 1.38236 * 119.99927 * 269.97868 * 23 22 16 29 29 H 1.09002 * 109.47122 * 309.37082 * 1 2 3 30 30 H 1.09007 * 109.47128 * 69.36520 * 1 2 3 31 31 H 1.08994 * 109.47681 * 189.36595 * 1 2 3 32 32 H 1.08997 * 109.47354 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47394 * 300.00054 * 3 2 1 34 34 H 1.09003 * 109.47117 * 60.00151 * 3 2 1 35 35 H 0.97004 * 119.99888 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.46644 * 180.02562 * 12 2 1 37 37 H 1.08995 * 109.47526 * 60.00209 * 12 2 1 38 38 H 0.96995 * 119.99914 * 0.02562 * 13 12 2 39 39 H 1.09010 * 109.47007 * 29.99713 * 17 16 14 40 40 H 1.09001 * 109.47172 * 149.99620 * 17 16 14 41 41 H 1.08996 * 109.46831 * 299.99669 * 18 17 16 42 42 H 1.09001 * 109.47366 * 59.99707 * 18 17 16 43 43 H 0.97000 * 120.00280 * 359.97438 * 20 19 18 44 44 H 0.97004 * 120.00123 * 179.97438 * 20 19 18 45 45 H 1.09001 * 109.46928 * 330.00394 * 22 16 14 46 46 H 1.08996 * 109.47457 * 210.00297 * 22 16 14 47 47 H 1.08007 * 119.99843 * 359.97363 * 24 23 22 48 48 H 1.07997 * 120.00255 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.00226 * 180.02562 * 26 25 24 50 50 H 1.08001 * 119.99975 * 179.72514 * 27 26 25 51 51 H 1.08004 * 120.00335 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6351 -1.6011 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9726 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4817 -2.7084 10 1 0.2469 1.5866 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5773 -1.4790 3.7810 16 7 1.4289 0.1447 4.7699 17 6 0.5863 1.3356 4.6356 18 6 1.4705 2.5833 4.5878 19 6 0.6038 3.8083 4.4490 20 7 1.1690 5.0301 4.3868 21 8 -0.6024 3.6945 4.3932 22 6 1.7836 -0.3551 6.1005 23 6 3.0651 0.2941 6.5557 24 6 3.0253 1.4796 7.2655 25 6 4.2007 2.0748 7.6836 26 6 5.4161 1.4843 7.3923 27 6 5.4564 0.3015 6.6780 28 6 4.2806 -0.2962 6.2640 29 1 -0.3633 0.6519 0.7945 30 1 -0.3634 0.3622 -0.9618 31 1 -0.3634 -1.0139 0.1672 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6979 -0.6298 -4.4269 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9938 0.7578 2.3563 39 1 0.0045 1.2672 3.7163 40 1 -0.0889 1.4011 5.4888 41 1 2.0522 2.6517 5.5070 42 1 2.1456 2.5177 3.7346 43 1 2.1336 5.1212 4.4317 44 1 0.6111 5.8186 4.2970 45 1 1.9189 -1.4359 6.0584 46 1 0.9856 -0.1159 6.8033 47 1 2.0756 1.9408 7.4935 48 1 4.1695 3.0013 8.2377 49 1 6.3345 1.9492 7.7193 50 1 6.4062 -0.1576 6.4466 51 1 4.3118 -1.2229 5.7102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457572858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:07 Heat of formation + Delta-G solvation = -51.593444 kcal Electronic energy + Delta-G solvation = -32001.081686 eV Core-core repulsion = 27899.997646 eV Total energy + Delta-G solvation = -4101.084040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61770 -40.34382 -39.95587 -38.54645 -36.87379 -35.06889 -34.60458 -33.61615 -32.78430 -31.81602 -31.31911 -28.13647 -27.98068 -27.12414 -26.32563 -25.19603 -23.40179 -22.47029 -21.45648 -20.97072 -20.86561 -19.19330 -18.32617 -18.09341 -17.91066 -17.43811 -17.27836 -16.93387 -16.67937 -16.23844 -15.94970 -15.90118 -15.46066 -15.18023 -15.03507 -14.82925 -14.52293 -14.36706 -14.26793 -14.09113 -13.98068 -13.95568 -13.78599 -13.59760 -13.23436 -12.92907 -12.84709 -12.40295 -12.16274 -12.14954 -12.05644 -11.97343 -11.79335 -11.78224 -11.24798 -11.08721 -11.04588 -10.62073 -10.59686 -10.42173 -10.14452 -9.74766 -9.70403 -9.50727 -8.30314 -6.31680 0.39836 0.55159 1.35588 1.36816 1.49533 1.66016 1.71577 2.17286 2.34046 2.63546 2.91187 3.05466 3.15978 3.80206 3.88976 3.93318 3.99402 4.05943 4.19799 4.22251 4.33214 4.33927 4.35967 4.38650 4.53811 4.63354 4.65839 4.70960 4.78889 4.79639 4.82728 4.84256 4.93083 4.97468 5.03370 5.15292 5.17451 5.21383 5.41354 5.49422 5.55552 5.61057 5.68521 5.71912 5.74962 5.78004 5.93570 5.95316 6.17044 6.31148 6.47264 6.72295 6.99670 7.32973 7.37324 7.60948 8.86868 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.003440 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.601905 B = 8137.012924 C = 9363.768901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.029 3.971 3 C -0.142 4.142 4 C -0.516 4.516 5 H 0.030 0.970 6 C 0.019 3.981 7 N -0.945 5.945 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.315 1.315 11 H -0.210 1.210 12 C 0.178 3.822 13 N -0.729 5.729 14 C 0.700 3.300 15 O -0.627 6.627 16 N -0.615 5.615 17 C 0.124 3.876 18 C -0.163 4.163 19 C 0.523 3.477 20 N -0.838 5.838 21 O -0.586 6.586 22 C 0.168 3.832 23 C -0.111 4.111 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.137 4.137 28 C -0.116 4.116 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.265 0.735 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.402 0.598 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.416 0.584 44 H 0.408 0.592 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.145 0.855 48 H 0.149 0.851 49 H 0.140 0.860 50 H 0.122 0.878 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 15.337 26.808 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 C -0.199 4.199 4 C -0.554 4.554 5 H 0.048 0.952 6 C -0.178 4.178 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.244 1.244 11 H -0.134 1.134 12 C 0.053 3.947 13 N -0.386 5.386 14 C 0.401 3.599 15 O -0.508 6.508 16 N -0.350 5.350 17 C 0.001 3.999 18 C -0.204 4.204 19 C 0.308 3.692 20 N -0.402 5.402 21 O -0.466 6.466 22 C 0.046 3.954 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.155 4.155 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.247 0.753 44 H 0.239 0.761 45 H 0.090 0.910 46 H 0.136 0.864 47 H 0.163 0.837 48 H 0.167 0.833 49 H 0.158 0.842 50 H 0.140 0.860 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.803 14.310 26.678 30.284 hybrid contribution 0.300 0.587 -1.276 1.436 sum 1.104 14.897 25.401 29.468 Atomic orbital electron populations 1.22205 0.96423 1.00453 1.00559 1.18642 0.93475 0.93147 0.91973 1.22246 1.01069 0.96776 0.99824 1.20996 1.32902 1.11108 0.90403 0.95203 1.25815 0.95330 1.01447 0.95222 1.70111 1.50678 1.38212 0.99395 0.86349 0.79399 0.80209 0.76785 1.20596 1.24417 1.13432 1.20869 0.97058 0.94530 0.82249 1.45340 1.55927 1.33297 1.04014 1.16112 0.79997 0.82569 0.81180 1.90863 1.44263 1.29407 1.86220 1.47128 1.53842 1.29709 1.04309 1.21357 0.91683 0.82099 1.04802 1.22221 0.99387 0.92232 1.06550 1.20625 0.88069 0.86030 0.74485 1.43757 1.12911 1.07783 1.75746 1.90766 1.16646 1.87352 1.51832 1.20384 0.94565 0.98554 0.81909 1.20297 0.94871 0.96787 0.99235 1.21254 0.99598 0.94240 0.97492 1.21457 0.91896 1.00763 0.99935 1.21455 0.99345 0.95163 0.97947 1.21356 0.98038 0.96977 0.99141 1.21223 0.93354 1.00062 0.98878 0.92457 0.93582 0.94012 0.93130 0.94732 0.91607 0.92648 0.93995 0.94446 0.75955 0.90896 0.87353 0.85991 0.88771 0.75277 0.76092 0.90960 0.86408 0.83731 0.83296 0.84233 0.85979 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 7.53 71.98 0.54 -4.99 16 2 C 0.03 1.25 0.50 -52.93 -0.03 1.22 16 3 C -0.14 -5.40 7.52 71.98 0.54 -4.86 16 4 C -0.52 -28.73 8.62 25.60 0.22 -28.51 16 5 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 6 C 0.02 1.11 5.32 84.65 0.45 1.56 16 7 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 8 Si 0.94 43.22 22.79 68.60 1.56 44.79 16 9 H -0.28 -12.38 7.10 99.48 0.71 -11.67 16 10 H -0.31 -14.86 7.11 99.48 0.71 -14.16 16 11 H -0.21 -8.33 4.65 99.48 0.46 -7.86 16 12 C 0.18 7.31 4.49 86.38 0.39 7.69 16 13 N -0.73 -23.68 4.87 -478.54 -2.33 -26.01 16 14 C 0.70 22.73 8.28 179.05 1.48 24.21 16 15 O -0.63 -25.51 15.45 -3.97 -0.06 -25.57 16 16 N -0.61 -14.01 2.46 -844.20 -2.07 -16.08 16 17 C 0.12 2.23 4.50 86.38 0.39 2.62 16 18 C -0.16 -2.35 6.02 29.85 0.18 -2.17 16 19 C 0.52 8.39 8.10 87.66 0.71 9.10 16 20 N -0.84 -7.39 8.87 -173.54 -1.54 -8.93 16 21 O -0.59 -14.37 16.82 -3.04 -0.05 -14.42 16 22 C 0.17 3.29 5.58 85.63 0.48 3.77 16 23 C -0.11 -2.11 5.39 -19.87 -0.11 -2.21 16 24 C -0.11 -1.40 7.54 22.27 0.17 -1.23 16 25 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 26 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 27 C -0.14 -2.71 10.05 22.27 0.22 -2.48 16 28 C -0.12 -2.76 9.70 22.27 0.22 -2.54 16 29 H 0.06 1.86 7.13 -2.39 -0.02 1.84 16 30 H 0.05 1.92 4.30 -2.38 -0.01 1.91 16 31 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 1.37 2.25 -2.38 -0.01 1.36 16 34 H 0.07 1.97 6.86 -2.39 -0.02 1.95 16 35 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 36 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.40 11.27 3.99 -92.71 -0.37 10.90 16 39 H 0.07 1.52 6.32 -2.38 -0.02 1.51 16 40 H 0.11 1.59 7.85 -2.39 -0.02 1.57 16 41 H 0.12 1.33 5.26 -2.39 -0.01 1.31 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.42 1.44 8.83 -92.71 -0.82 0.62 16 44 H 0.41 3.07 8.93 -92.71 -0.83 2.24 16 45 H 0.07 1.76 7.36 -2.39 -0.02 1.74 16 46 H 0.12 1.47 7.84 -2.39 -0.02 1.45 16 47 H 0.15 1.14 7.73 -2.91 -0.02 1.11 16 48 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 49 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 50 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 51 H 0.10 2.92 7.58 -2.91 -0.02 2.90 16 Total: -1.00 -78.87 396.70 0.83 -78.04 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.28 Total: 28.36 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 6.30 Total: -1.58 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -5.64 Total: -109.61 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.11 Total: -39.99 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.56 Total: 44.79 kcal Total: -78.87 0.83 -78.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457572858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.444 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds