Wall clock time and date at job start Wed Apr 1 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99851 * 2 1 4 4 C 1.34780 * 120.00328 * 180.02562 * 2 1 3 5 5 O 1.21554 * 119.99870 * 5.50410 * 4 2 1 6 6 C 1.47845 * 119.99773 * 185.50599 * 4 2 1 7 7 C 1.39594 * 120.14828 * 33.66709 * 6 4 2 8 8 C 1.37931 * 119.85311 * 180.02562 * 7 6 4 9 9 C 1.38385 * 120.14571 * 359.72468 * 8 7 6 10 10 C 1.38334 * 120.29005 * 0.54628 * 9 8 7 11 11 C 1.50709 * 119.92664 * 179.72698 * 10 9 8 12 12 N 1.46499 * 109.47062 * 269.72609 * 11 10 9 13 13 C 1.34775 * 120.00074 * 179.72315 * 12 11 10 14 14 O 1.21584 * 119.99911 * 0.27877 * 13 12 11 15 15 N 1.34776 * 119.99920 * 180.27919 * 13 12 11 16 16 C 1.46505 * 119.99628 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46863 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46997 * 299.99553 * 17 16 15 19 19 C 1.52997 * 109.47600 * 59.99640 * 17 16 15 20 20 C 1.50695 * 109.47135 * 180.02562 * 17 16 15 21 21 H 1.08007 * 120.00073 * 359.97438 * 20 17 16 22 22 C 1.37875 * 120.00522 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99663 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 120.00397 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.47256 * 89.99972 * 24 22 20 26 26 H 1.48496 * 109.47183 * 209.99572 * 24 22 20 27 27 H 1.48497 * 109.47246 * 329.99717 * 24 22 20 28 28 C 1.37978 * 120.14706 * 359.45743 * 10 9 8 29 29 H 1.09002 * 109.46913 * 269.99752 * 1 2 3 30 30 H 1.08998 * 109.47134 * 29.99884 * 1 2 3 31 31 H 1.08999 * 109.46857 * 150.00502 * 1 2 3 32 32 H 1.09005 * 109.47190 * 185.33478 * 3 2 1 33 33 H 1.09004 * 109.46845 * 305.33101 * 3 2 1 34 34 H 1.08993 * 109.47400 * 65.33190 * 3 2 1 35 35 H 1.07998 * 120.07343 * 359.97438 * 7 6 4 36 36 H 1.08003 * 119.92975 * 179.97438 * 8 7 6 37 37 H 1.08003 * 119.85191 * 180.29478 * 9 8 7 38 38 H 1.08997 * 109.46841 * 149.72486 * 11 10 9 39 39 H 1.08998 * 109.46908 * 29.72707 * 11 10 9 40 40 H 0.97003 * 120.00076 * 0.02562 * 12 11 10 41 41 H 0.96992 * 120.00182 * 359.97438 * 15 13 12 42 42 H 1.08998 * 109.46639 * 299.99420 * 16 15 13 43 43 H 1.08999 * 109.47523 * 59.99497 * 16 15 13 44 44 H 1.08997 * 109.46953 * 60.00519 * 18 17 16 45 45 H 1.08998 * 109.47092 * 180.02562 * 18 17 16 46 46 H 1.08999 * 109.46898 * 300.00251 * 18 17 16 47 47 H 1.09005 * 109.46946 * 59.99633 * 19 17 16 48 48 H 1.08998 * 109.47236 * 179.97438 * 19 17 16 49 49 H 1.09006 * 109.47248 * 300.00285 * 19 17 16 50 50 H 0.96996 * 120.00146 * 180.02562 * 23 22 20 51 51 H 1.07996 * 120.07364 * 180.25405 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5354 -2.2174 -0.1020 6 6 3.6123 -1.1701 0.1223 7 6 4.2533 -0.2004 0.8953 8 6 5.6282 -0.2084 1.0053 9 6 6.3716 -1.1784 0.3560 10 6 5.7430 -2.1388 -0.4160 11 6 6.5612 -3.1877 -1.1245 12 7 6.9196 -2.7069 -2.4611 13 6 7.6602 -3.4805 -3.2793 14 8 8.0267 -4.5794 -2.9101 15 7 7.9947 -3.0358 -4.5069 16 6 8.7994 -3.8770 -5.3965 17 6 9.0360 -3.1419 -6.7173 18 6 7.6908 -2.8391 -7.3805 19 6 9.7773 -1.8313 -6.4460 20 6 9.8631 -4.0073 -7.6326 21 1 10.1880 -4.9838 -7.3049 22 6 10.2062 -3.5522 -8.8881 23 7 9.8110 -2.3629 -9.2870 24 14 11.2320 -4.6246 -10.0224 25 1 10.3346 -5.4731 -10.8470 26 1 12.0523 -3.7626 -10.9107 27 1 12.1247 -5.4908 -9.2112 28 6 4.3683 -2.1421 -0.5344 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.2653 1.0719 -0.0956 33 1 1.8644 1.8806 -0.8384 34 1 2.0077 1.7979 0.9338 35 1 3.6740 0.5550 1.4054 36 1 6.1254 0.5415 1.6027 37 1 7.4476 -1.1831 0.4493 38 1 5.9786 -4.1047 -1.2123 39 1 7.4686 -3.3868 -0.5545 40 1 6.6275 -1.8300 -2.7556 41 1 7.7021 -2.1593 -4.8016 42 1 9.7578 -4.0922 -4.9242 43 1 8.2715 -4.8109 -5.5894 44 1 7.0922 -2.2133 -6.7186 45 1 7.8594 -2.3158 -8.3217 46 1 7.1627 -3.7728 -7.5738 47 1 10.7356 -2.0470 -5.9735 48 1 9.9462 -1.3079 -7.3870 49 1 9.1786 -1.2055 -5.7841 50 1 10.0520 -2.0428 -10.1703 51 1 3.8786 -2.8949 -1.1342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457716945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:55 Heat of formation + Delta-G solvation = -26.210027 kcal Electronic energy + Delta-G solvation = -29836.115056 eV Core-core repulsion = 25736.131724 eV Total energy + Delta-G solvation = -4099.983332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91042 -39.67118 -38.78824 -36.51737 -36.09799 -34.78060 -33.24967 -31.97455 -31.55040 -30.62583 -28.54483 -26.89319 -26.51314 -25.70269 -25.40721 -24.38497 -23.48636 -22.07049 -20.61071 -19.99507 -18.75714 -18.28432 -17.32420 -17.10568 -16.54916 -16.26436 -15.90804 -15.76434 -15.51187 -14.87427 -14.79543 -14.64675 -14.11697 -13.92625 -13.78493 -13.71644 -13.33040 -13.24985 -13.19167 -12.87008 -12.84590 -12.70977 -12.42004 -12.16075 -12.14582 -11.90729 -11.43348 -11.35059 -11.17769 -10.84643 -10.67405 -10.36341 -10.33210 -10.19443 -9.85594 -9.60783 -9.42182 -9.32847 -9.19328 -9.12713 -8.99136 -8.76873 -8.39570 -8.17036 -6.00361 -4.10029 0.46762 0.84309 2.33976 2.51539 3.06308 3.29848 3.36693 3.40785 3.49619 3.65637 3.99920 4.25686 4.40698 4.44695 4.51291 4.66603 4.78898 4.80604 4.81826 4.89478 4.96696 5.10409 5.18997 5.22248 5.26440 5.38822 5.40228 5.58456 5.67779 5.81934 5.89318 5.96064 6.16191 6.23459 6.39311 6.41680 6.52702 6.60374 6.82271 6.82972 6.84977 6.93028 7.05549 7.12020 7.31921 7.43406 7.58043 7.70268 7.71853 8.03341 8.14622 8.40289 8.49825 8.89848 9.05777 9.55558 11.01078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.001855 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.383379 B =15087.935899 C =15658.577484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.618 5.618 3 C 0.055 3.945 4 C 0.559 3.441 5 O -0.531 6.531 6 C -0.137 4.137 7 C -0.090 4.090 8 C -0.129 4.129 9 C -0.073 4.073 10 C -0.108 4.108 11 C 0.181 3.819 12 N -0.751 5.751 13 C 0.698 3.302 14 O -0.599 6.599 15 N -0.732 5.732 16 C 0.150 3.850 17 C 0.055 3.945 18 C -0.130 4.130 19 C -0.129 4.129 20 C -0.504 4.504 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.894 3.106 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.042 4.042 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.394 0.606 41 H 0.393 0.607 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.005 0.995 45 H 0.085 0.915 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.085 0.915 49 H 0.005 0.995 50 H 0.259 0.741 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 12.757 21.424 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.352 5.352 3 C -0.087 4.087 4 C 0.348 3.652 5 O -0.408 6.408 6 C -0.140 4.140 7 C -0.109 4.109 8 C -0.147 4.147 9 C -0.092 4.092 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.408 5.408 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.387 5.387 16 C 0.027 3.973 17 C 0.055 3.945 18 C -0.188 4.188 19 C -0.187 4.187 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.722 3.278 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.227 0.773 41 H 0.228 0.772 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.103 0.897 46 H 0.046 0.954 47 H 0.045 0.955 48 H 0.103 0.897 49 H 0.024 0.976 50 H 0.069 0.931 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.456 11.267 21.512 28.261 hybrid contribution 0.187 0.490 -0.853 1.001 sum -14.269 11.757 20.659 27.724 Atomic orbital electron populations 1.21667 0.78606 1.03537 1.02004 1.47584 1.07274 1.06270 1.74025 1.22470 0.99107 0.85050 1.02101 1.18434 0.87206 0.83410 0.76156 1.90803 1.69802 1.31097 1.49054 1.19809 0.92664 0.98673 1.02885 1.21574 0.95134 0.96805 0.97385 1.21134 0.93534 0.99462 1.00548 1.21389 1.00628 0.92921 0.94269 1.19947 0.93503 0.97845 0.99531 1.19942 0.98030 0.94268 0.82032 1.45142 1.58846 1.21068 1.15780 1.16056 0.79049 0.84076 0.81036 1.90890 1.60164 1.20774 1.75954 1.45503 1.57296 1.21760 1.14109 1.21587 0.92748 0.92927 0.90003 1.18368 0.93655 0.93224 0.89290 1.21821 0.95996 0.98908 1.02036 1.21814 0.97592 0.98191 1.01102 1.20986 1.32331 1.02042 0.98865 0.92401 1.24886 0.95867 0.95061 0.97800 1.69807 1.45927 1.17483 1.19316 0.86566 0.80293 0.80330 0.80645 1.20734 1.21316 1.19899 1.21191 0.92857 0.96031 0.96057 0.92556 0.91001 0.90198 0.88367 0.91627 0.91858 0.84608 0.85005 0.85016 0.90668 0.90613 0.77273 0.77210 0.92942 0.92943 0.97567 0.89667 0.95448 0.95463 0.89669 0.97567 0.93059 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.52 59.85 0.63 1.15 16 2 N -0.62 -4.71 3.27 -190.64 -0.62 -5.34 16 3 C 0.06 0.23 9.02 59.85 0.54 0.77 16 4 C 0.56 5.99 7.39 -12.33 -0.09 5.90 16 5 O -0.53 -7.71 16.35 5.32 0.09 -7.62 16 6 C -0.14 -1.26 5.34 -104.97 -0.56 -1.82 16 7 C -0.09 -0.58 7.34 -39.19 -0.29 -0.87 16 8 C -0.13 -0.77 10.03 -39.64 -0.40 -1.17 16 9 C -0.07 -0.54 9.69 -39.49 -0.38 -0.92 16 10 C -0.11 -0.99 5.24 -104.68 -0.55 -1.54 16 11 C 0.18 2.06 5.80 -5.19 -0.03 2.03 16 12 N -0.75 -9.72 5.55 -66.41 -0.37 -10.09 16 13 C 0.70 12.42 8.57 -86.92 -0.74 11.67 16 14 O -0.60 -13.06 16.34 5.29 0.09 -12.98 16 15 N -0.73 -13.20 4.96 -65.22 -0.32 -13.53 16 16 C 0.15 3.25 4.50 -4.04 -0.02 3.23 16 17 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 18 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 19 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 20 C -0.50 -13.24 8.01 -34.44 -0.28 -13.52 16 21 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 22 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 23 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 24 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 C -0.04 -0.42 9.26 -39.18 -0.36 -0.78 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.08 0.63 7.35 -51.93 -0.38 0.25 16 32 H 0.10 0.42 4.14 -51.93 -0.21 0.20 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.15 8.04 -51.93 -0.42 -0.26 16 35 H 0.14 0.57 5.82 -52.49 -0.31 0.26 16 36 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.39 4.19 8.48 -40.82 -0.35 3.85 16 41 H 0.39 6.34 6.18 -40.82 -0.25 6.09 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 49 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 50 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 51 H 0.14 1.48 7.98 -52.49 -0.42 1.07 16 LS Contribution 408.31 15.07 6.15 6.15 Total: -1.00 -33.01 408.31 -9.45 -42.47 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.86 Total: 6.51 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.10 Total: 1.73 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.80 Total: -52.07 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.17 Total: -20.60 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.01 -9.45 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457716945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.257 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds