Wall clock time and date at job start Wed Apr 1 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99851 * 2 1 4 4 C 1.34780 * 120.00328 * 180.02562 * 2 1 3 5 5 O 1.21554 * 119.99870 * 5.50410 * 4 2 1 6 6 C 1.47845 * 119.99773 * 185.50599 * 4 2 1 7 7 C 1.39594 * 120.14828 * 33.66709 * 6 4 2 8 8 C 1.37931 * 119.85311 * 180.02562 * 7 6 4 9 9 C 1.38385 * 120.14571 * 359.72468 * 8 7 6 10 10 C 1.38334 * 120.29005 * 0.54628 * 9 8 7 11 11 C 1.50709 * 119.92664 * 179.72698 * 10 9 8 12 12 N 1.46499 * 109.47062 * 269.72609 * 11 10 9 13 13 C 1.34775 * 120.00074 * 179.72315 * 12 11 10 14 14 O 1.21584 * 119.99911 * 0.27877 * 13 12 11 15 15 N 1.34776 * 119.99920 * 180.27919 * 13 12 11 16 16 C 1.46505 * 119.99628 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46863 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46997 * 299.99553 * 17 16 15 19 19 C 1.52997 * 109.47600 * 59.99640 * 17 16 15 20 20 C 1.50695 * 109.47135 * 180.02562 * 17 16 15 21 21 H 1.08007 * 120.00073 * 359.97438 * 20 17 16 22 22 C 1.37875 * 120.00522 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99663 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 120.00397 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.47256 * 89.99972 * 24 22 20 26 26 H 1.48496 * 109.47183 * 209.99572 * 24 22 20 27 27 H 1.48497 * 109.47246 * 329.99717 * 24 22 20 28 28 C 1.37978 * 120.14706 * 359.45743 * 10 9 8 29 29 H 1.09002 * 109.46913 * 269.99752 * 1 2 3 30 30 H 1.08998 * 109.47134 * 29.99884 * 1 2 3 31 31 H 1.08999 * 109.46857 * 150.00502 * 1 2 3 32 32 H 1.09005 * 109.47190 * 185.33478 * 3 2 1 33 33 H 1.09004 * 109.46845 * 305.33101 * 3 2 1 34 34 H 1.08993 * 109.47400 * 65.33190 * 3 2 1 35 35 H 1.07998 * 120.07343 * 359.97438 * 7 6 4 36 36 H 1.08003 * 119.92975 * 179.97438 * 8 7 6 37 37 H 1.08003 * 119.85191 * 180.29478 * 9 8 7 38 38 H 1.08997 * 109.46841 * 149.72486 * 11 10 9 39 39 H 1.08998 * 109.46908 * 29.72707 * 11 10 9 40 40 H 0.97003 * 120.00076 * 0.02562 * 12 11 10 41 41 H 0.96992 * 120.00182 * 359.97438 * 15 13 12 42 42 H 1.08998 * 109.46639 * 299.99420 * 16 15 13 43 43 H 1.08999 * 109.47523 * 59.99497 * 16 15 13 44 44 H 1.08997 * 109.46953 * 60.00519 * 18 17 16 45 45 H 1.08998 * 109.47092 * 180.02562 * 18 17 16 46 46 H 1.08999 * 109.46898 * 300.00251 * 18 17 16 47 47 H 1.09005 * 109.46946 * 59.99633 * 19 17 16 48 48 H 1.08998 * 109.47236 * 179.97438 * 19 17 16 49 49 H 1.09006 * 109.47248 * 300.00285 * 19 17 16 50 50 H 0.96996 * 120.00146 * 180.02562 * 23 22 20 51 51 H 1.07996 * 120.07364 * 180.25405 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5354 -2.2174 -0.1020 6 6 3.6123 -1.1701 0.1223 7 6 4.2533 -0.2004 0.8953 8 6 5.6282 -0.2084 1.0053 9 6 6.3716 -1.1784 0.3560 10 6 5.7430 -2.1388 -0.4160 11 6 6.5612 -3.1877 -1.1245 12 7 6.9196 -2.7069 -2.4611 13 6 7.6602 -3.4805 -3.2793 14 8 8.0267 -4.5794 -2.9101 15 7 7.9947 -3.0358 -4.5069 16 6 8.7994 -3.8770 -5.3965 17 6 9.0360 -3.1419 -6.7173 18 6 7.6908 -2.8391 -7.3805 19 6 9.7773 -1.8313 -6.4460 20 6 9.8631 -4.0073 -7.6326 21 1 10.1880 -4.9838 -7.3049 22 6 10.2062 -3.5522 -8.8881 23 7 9.8110 -2.3629 -9.2870 24 14 11.2320 -4.6246 -10.0224 25 1 10.3346 -5.4731 -10.8470 26 1 12.0523 -3.7626 -10.9107 27 1 12.1247 -5.4908 -9.2112 28 6 4.3683 -2.1421 -0.5344 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.2653 1.0719 -0.0956 33 1 1.8644 1.8806 -0.8384 34 1 2.0077 1.7979 0.9338 35 1 3.6740 0.5550 1.4054 36 1 6.1254 0.5415 1.6027 37 1 7.4476 -1.1831 0.4493 38 1 5.9786 -4.1047 -1.2123 39 1 7.4686 -3.3868 -0.5545 40 1 6.6275 -1.8300 -2.7556 41 1 7.7021 -2.1593 -4.8016 42 1 9.7578 -4.0922 -4.9242 43 1 8.2715 -4.8109 -5.5894 44 1 7.0922 -2.2133 -6.7186 45 1 7.8594 -2.3158 -8.3217 46 1 7.1627 -3.7728 -7.5738 47 1 10.7356 -2.0470 -5.9735 48 1 9.9462 -1.3079 -7.3870 49 1 9.1786 -1.2055 -5.7841 50 1 10.0520 -2.0428 -10.1703 51 1 3.8786 -2.8949 -1.1342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457716945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:54 Heat of formation + Delta-G solvation = -47.767809 kcal Electronic energy + Delta-G solvation = -29837.049872 eV Core-core repulsion = 25736.131724 eV Total energy + Delta-G solvation = -4100.918148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61055 -41.01362 -39.59285 -38.22363 -36.80990 -35.89716 -34.97960 -33.06932 -32.37535 -32.02731 -29.07196 -27.69056 -27.54416 -27.46176 -27.23789 -25.91581 -24.08193 -22.76086 -22.03154 -20.70759 -20.55344 -19.60117 -18.12757 -17.75140 -17.74381 -17.17383 -17.11831 -16.93159 -16.60390 -16.56563 -15.83128 -15.60123 -15.30096 -15.08758 -14.76921 -14.67979 -14.52792 -14.43202 -14.10319 -13.96547 -13.73773 -13.63674 -13.37702 -13.24685 -13.16057 -13.08261 -12.76108 -12.66655 -12.58301 -12.50242 -12.23294 -12.12615 -12.04104 -11.46652 -11.42713 -11.16433 -11.07328 -10.69014 -10.40385 -10.31117 -10.05423 -9.86846 -9.70139 -9.65790 -8.01032 -6.16237 -0.16025 0.21229 1.43325 1.46108 1.54307 1.60736 1.85105 2.00582 2.21005 2.47238 2.74428 3.22500 3.40461 3.49763 3.55925 3.88095 4.02506 4.17882 4.25452 4.34020 4.36843 4.43539 4.48986 4.55361 4.59402 4.66541 4.72231 4.73688 4.82151 4.89230 4.92432 4.96289 5.01829 5.07892 5.12491 5.22118 5.23591 5.33991 5.39761 5.42834 5.45620 5.50232 5.64270 5.68771 5.69185 5.84702 6.07110 6.17009 6.22134 6.23734 6.45436 6.87853 6.99280 7.16076 7.51128 7.63723 8.97924 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.001855 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.383379 B =15087.935899 C =15658.577484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.048 3.952 4 C 0.548 3.452 5 O -0.586 6.586 6 C -0.151 4.151 7 C -0.075 4.075 8 C -0.117 4.117 9 C -0.070 4.070 10 C -0.113 4.113 11 C 0.183 3.817 12 N -0.730 5.730 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.725 5.725 16 C 0.168 3.832 17 C 0.051 3.949 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.526 4.526 21 H 0.044 0.956 22 C 0.027 3.973 23 N -0.899 5.899 24 Si 0.945 3.055 25 H -0.280 1.280 26 H -0.282 1.282 27 H -0.276 1.276 28 C -0.058 4.058 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.147 0.853 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.409 0.591 41 H 0.405 0.595 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.018 0.982 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.260 0.740 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.556 15.965 23.233 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.345 5.345 3 C -0.093 4.093 4 C 0.338 3.662 5 O -0.468 6.468 6 C -0.154 4.154 7 C -0.093 4.093 8 C -0.135 4.135 9 C -0.088 4.088 10 C -0.113 4.113 11 C 0.059 3.941 12 N -0.386 5.386 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.381 5.381 16 C 0.043 3.957 17 C 0.050 3.950 18 C -0.178 4.178 19 C -0.176 4.176 20 C -0.565 4.565 21 H 0.062 0.938 22 C -0.173 4.173 23 N -0.538 5.538 24 Si 0.772 3.228 25 H -0.206 1.206 26 H -0.208 1.208 27 H -0.201 1.201 28 C -0.078 4.078 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.165 0.835 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.081 0.919 49 H 0.056 0.944 50 H 0.070 0.930 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.553 14.577 23.338 31.128 hybrid contribution 0.139 -0.421 -1.341 1.412 sum -14.414 14.156 21.997 29.867 Atomic orbital electron populations 1.21792 0.78037 1.03669 1.02764 1.47769 1.07958 1.06619 1.72181 1.22730 0.98835 0.83547 1.04151 1.18812 0.87977 0.83581 0.75792 1.90767 1.70888 1.33146 1.51977 1.19799 0.91870 0.99658 1.04081 1.21886 0.95688 0.95981 0.95777 1.21519 0.93136 0.99246 0.99592 1.21619 1.01584 0.92312 0.93324 1.19648 0.92670 0.98296 1.00700 1.19964 0.98192 0.94671 0.81224 1.44981 1.57001 1.20971 1.15687 1.16174 0.79187 0.83842 0.81093 1.90864 1.61893 1.22836 1.76749 1.45192 1.57083 1.21814 1.13969 1.21125 0.92262 0.92513 0.89795 1.18369 0.93683 0.93386 0.89531 1.21667 0.95968 0.98584 1.01558 1.21646 0.97680 0.97809 1.00489 1.21262 1.33203 1.02110 0.99939 0.93762 1.25455 0.96814 0.96133 0.98873 1.69906 1.46245 1.18132 1.19478 0.85758 0.79015 0.78995 0.79023 1.20634 1.20763 1.20087 1.21055 0.93402 0.96361 0.96988 0.91492 0.88188 0.92713 0.88205 0.90386 0.89096 0.81747 0.81411 0.83479 0.92390 0.90428 0.75532 0.75808 0.94482 0.94857 0.94518 0.91846 0.96534 0.96240 0.91910 0.94384 0.93048 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.52 127.77 1.34 2.25 16 2 N -0.61 -8.42 3.27 -875.34 -2.87 -11.28 16 3 C 0.05 0.24 9.02 127.77 1.15 1.39 16 4 C 0.55 11.79 7.39 86.79 0.64 12.43 16 5 O -0.59 -18.17 16.35 -3.89 -0.06 -18.23 16 6 C -0.15 -2.63 5.34 -20.09 -0.11 -2.74 16 7 C -0.08 -0.71 7.34 22.52 0.17 -0.54 16 8 C -0.12 -0.88 10.03 22.23 0.22 -0.66 16 9 C -0.07 -0.81 9.69 22.33 0.22 -0.60 16 10 C -0.11 -1.95 5.24 -19.90 -0.10 -2.06 16 11 C 0.18 4.14 5.80 85.64 0.50 4.63 16 12 N -0.73 -18.25 5.55 -482.30 -2.68 -20.93 16 13 C 0.70 24.58 8.57 179.05 1.53 26.11 16 14 O -0.64 -28.42 16.34 -3.98 -0.07 -28.48 16 15 N -0.73 -25.57 4.96 -478.53 -2.37 -27.94 16 16 C 0.17 7.31 4.50 86.38 0.39 7.69 16 17 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 18 C -0.12 -5.39 8.08 71.98 0.58 -4.80 16 19 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 20 C -0.53 -28.07 8.01 25.60 0.21 -27.86 16 21 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 22 C 0.03 1.42 5.15 84.65 0.44 1.86 16 23 N -0.90 -47.95 9.35 21.45 0.20 -47.75 16 24 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 C -0.06 -1.19 9.26 22.53 0.21 -0.98 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 31 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 32 H 0.10 0.47 4.14 -2.38 -0.01 0.46 16 33 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.09 0.01 8.04 -2.39 -0.02 -0.01 16 35 H 0.17 0.58 5.82 -2.91 -0.02 0.57 16 36 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 37 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 39 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 40 H 0.41 7.95 8.48 -92.71 -0.79 7.16 16 41 H 0.41 12.23 6.18 -92.71 -0.57 11.66 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 45 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 49 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 50 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 51 H 0.11 2.71 7.98 -2.91 -0.02 2.69 16 Total: -1.00 -74.97 408.31 1.71 -73.25 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.40 Total: 22.58 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.94 Total: 13.84 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -7.72 Total: -107.90 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.13 Total: -46.71 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.97 1.71 -73.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457716945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.485 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds