Wall clock time and date at job start Wed Apr 1 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34768 * 120.00214 * 2 1 4 4 O 1.21555 * 120.00204 * 359.97438 * 3 2 1 5 5 C 1.47851 * 119.99875 * 180.02562 * 3 2 1 6 6 C 1.39597 * 120.14450 * 359.97438 * 5 3 2 7 7 C 1.37937 * 119.84924 * 179.97438 * 6 5 3 8 8 C 1.38378 * 120.15046 * 0.27307 * 7 6 5 9 9 C 1.38341 * 120.28669 * 359.45105 * 8 7 6 10 10 C 1.50700 * 119.92329 * 180.25151 * 9 8 7 11 11 C 1.52995 * 109.47389 * 270.29538 * 10 9 8 12 12 N 1.46503 * 109.47513 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99937 * 180.02562 * 12 11 10 14 14 O 1.21581 * 120.00711 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99643 * 180.02562 * 13 12 11 16 16 C 1.46503 * 120.00182 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47414 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46950 * 300.00223 * 17 16 15 19 19 C 1.52995 * 109.46825 * 60.00102 * 17 16 15 20 20 C 1.50697 * 109.47319 * 180.02562 * 17 16 15 21 21 H 1.08004 * 119.99857 * 1.35104 * 20 17 16 22 22 C 1.37874 * 120.00043 * 181.34769 * 20 17 16 23 23 N 1.31514 * 119.99850 * 193.97541 * 22 20 17 24 24 Si 1.86803 * 120.00250 * 13.97529 * 22 20 17 25 25 H 1.48496 * 109.46767 * 84.54637 * 24 22 20 26 26 H 1.48497 * 109.47029 * 204.54747 * 24 22 20 27 27 H 1.48505 * 109.46832 * 324.55181 * 24 22 20 28 28 C 1.37973 * 120.14877 * 0.54991 * 9 8 7 29 29 H 1.08999 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46961 * 300.00514 * 1 2 3 31 31 H 1.09003 * 109.46738 * 59.99725 * 1 2 3 32 32 H 0.97002 * 119.99217 * 179.97438 * 2 1 3 33 33 H 1.07995 * 120.07018 * 0.02562 * 6 5 3 34 34 H 1.08000 * 119.92198 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.85443 * 179.70182 * 8 7 6 36 36 H 1.08999 * 109.47393 * 30.29817 * 10 9 8 37 37 H 1.09010 * 109.46872 * 150.29908 * 10 9 8 38 38 H 1.09005 * 109.47253 * 300.00063 * 11 10 9 39 39 H 1.09004 * 109.47214 * 60.00316 * 11 10 9 40 40 H 0.97005 * 119.99721 * 0.02562 * 12 11 10 41 41 H 0.97009 * 120.00429 * 0.02562 * 15 13 12 42 42 H 1.08997 * 109.47246 * 300.00337 * 16 15 13 43 43 H 1.09010 * 109.46687 * 60.00469 * 16 15 13 44 44 H 1.08997 * 109.46799 * 69.36955 * 18 17 16 45 45 H 1.09001 * 109.46935 * 189.36230 * 18 17 16 46 46 H 1.08995 * 109.47386 * 309.36515 * 18 17 16 47 47 H 1.09004 * 109.47225 * 60.00531 * 19 17 16 48 48 H 1.09002 * 109.46946 * 179.97438 * 19 17 16 49 49 H 1.09000 * 109.47809 * 299.99970 * 19 17 16 50 50 H 0.97006 * 120.00005 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.07802 * 179.74449 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6174 1.1670 -0.0006 6 6 4.3184 -0.0402 -0.0006 7 6 5.6977 -0.0332 -0.0016 8 6 6.3867 1.1669 0.0030 9 6 5.6980 2.3667 -0.0027 10 6 6.4566 3.6689 -0.0034 11 6 6.7144 4.1097 1.4389 12 7 7.4514 5.3758 1.4383 13 6 7.7918 5.9579 2.6052 14 8 7.4878 5.4321 3.6584 15 7 8.4693 7.1230 2.6046 16 6 8.8389 7.7561 3.8730 17 6 9.5942 9.0569 3.5928 18 6 10.8590 8.7491 2.7887 19 6 8.6986 10.0042 2.7919 20 6 9.9749 9.7078 4.8975 21 1 9.7243 9.2296 5.8329 22 6 10.6432 10.9138 4.8971 23 7 11.2156 11.3487 5.9984 24 14 10.7356 11.9299 3.3324 25 1 9.5105 12.7599 3.2083 26 1 11.9285 12.8128 3.3853 27 1 10.8411 11.0247 2.1599 28 6 4.3183 2.3739 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.9499 -0.8401 0.0004 33 1 3.7818 -0.9775 -0.0006 34 1 6.2412 -0.9665 -0.0021 35 1 7.4666 1.1668 0.0070 36 1 7.4081 3.5349 -0.5179 37 1 5.8700 4.4308 -0.5168 38 1 5.7629 4.2437 1.9535 39 1 7.3010 3.3478 1.9523 40 1 7.6943 5.7952 0.5980 41 1 8.7116 7.5429 1.7643 42 1 7.9378 7.9758 4.4456 43 1 9.4766 7.0810 4.4438 44 1 10.5823 8.4340 1.7827 45 1 11.4797 9.6433 2.7314 46 1 11.4162 7.9509 3.2792 47 1 7.7976 10.2235 3.3648 48 1 9.2365 10.9310 2.5927 49 1 8.4236 9.5332 1.8482 50 1 11.6861 12.1970 5.9980 51 1 3.7819 3.3112 -0.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458428657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:58 Heat of formation + Delta-G solvation = -32.786900 kcal Electronic energy + Delta-G solvation = -29190.551414 eV Core-core repulsion = 25090.282887 eV Total energy + Delta-G solvation = -4100.268527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67255 -39.71586 -38.93350 -36.93400 -35.47965 -35.09098 -33.35150 -32.77566 -31.63883 -31.39810 -28.90971 -27.34715 -26.37798 -25.82744 -24.87320 -23.94837 -23.38048 -21.97011 -20.79518 -20.50286 -19.16543 -18.50143 -17.85749 -16.73583 -16.49014 -16.15750 -15.97466 -15.74369 -15.65594 -15.23731 -15.08956 -14.98409 -14.19597 -14.15235 -13.96876 -13.89391 -13.59011 -13.32755 -13.13485 -12.95256 -12.87643 -12.76982 -12.57939 -12.18984 -12.14762 -12.04099 -12.02398 -11.69701 -11.46639 -11.20469 -10.41611 -10.40451 -10.28634 -10.15132 -10.04351 -9.83310 -9.69630 -9.37483 -9.23787 -9.11043 -9.04166 -8.66753 -8.46706 -8.31318 -6.12702 -4.09742 0.39967 0.87222 2.42426 2.69223 3.00208 3.25389 3.32435 3.39887 3.41592 3.58177 4.17243 4.23452 4.37219 4.37861 4.56043 4.68236 4.71927 4.75998 4.79441 4.88622 5.02495 5.06603 5.18112 5.20418 5.31135 5.39821 5.52541 5.68489 5.76410 5.80279 5.84415 5.86852 5.89756 6.07275 6.10713 6.12175 6.37386 6.40704 6.47536 6.54812 6.58282 6.64466 6.73621 6.85457 6.95250 7.01701 7.21697 7.28147 7.46037 7.73499 7.75091 8.34520 8.49504 8.92527 8.97154 9.51207 11.00362 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.001589 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.612954 B =17617.813049 C =18049.834384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.557 3.443 4 O -0.533 6.533 5 C -0.137 4.137 6 C -0.090 4.090 7 C -0.125 4.125 8 C -0.085 4.085 9 C -0.084 4.084 10 C -0.093 4.093 11 C 0.146 3.854 12 N -0.755 5.755 13 C 0.699 3.301 14 O -0.595 6.595 15 N -0.738 5.738 16 C 0.160 3.840 17 C 0.028 3.972 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.512 4.512 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.891 5.891 24 Si 0.886 3.114 25 H -0.286 1.286 26 H -0.306 1.306 27 H -0.249 1.249 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.401 0.599 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.393 0.607 41 H 0.392 0.608 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.040 0.960 49 H 0.029 0.971 50 H 0.264 0.736 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 -26.075 -19.201 35.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.345 3.655 4 O -0.410 6.410 5 C -0.140 4.140 6 C -0.109 4.109 7 C -0.143 4.143 8 C -0.103 4.103 9 C -0.085 4.085 10 C -0.131 4.131 11 C 0.021 3.979 12 N -0.412 5.412 13 C 0.398 3.602 14 O -0.473 6.473 15 N -0.393 5.393 16 C 0.038 3.962 17 C 0.026 3.974 18 C -0.197 4.197 19 C -0.203 4.203 20 C -0.550 4.550 21 H 0.095 0.905 22 C -0.127 4.127 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.214 1.214 26 H -0.234 1.234 27 H -0.176 1.176 28 C -0.070 4.070 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.227 0.773 41 H 0.226 0.774 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.949 -25.653 -18.068 34.756 hybrid contribution 0.473 0.601 -1.529 1.709 sum -14.477 -25.052 -19.596 34.946 Atomic orbital electron populations 1.21574 0.79059 1.02395 1.02662 1.45704 1.07993 1.08603 1.76262 1.18354 0.87346 0.83748 0.76045 1.90802 1.69936 1.31116 1.49116 1.19861 0.92487 0.94573 1.07052 1.21253 0.94734 0.96657 0.98216 1.21094 0.93879 0.98446 1.00831 1.21342 1.00503 0.91778 0.96673 1.19669 0.93238 0.94998 1.00599 1.20818 1.00680 0.94310 0.97266 1.21064 0.96716 0.84974 0.95149 1.45102 1.62901 1.25744 1.07466 1.16016 0.79128 0.81213 0.83804 1.90908 1.60633 1.65533 1.30245 1.45500 1.59858 1.22824 1.11123 1.21372 0.98758 0.93672 0.82447 1.18741 0.91398 0.91103 0.96135 1.22276 0.99502 1.01232 0.96731 1.22344 1.00376 0.99407 0.98174 1.20717 1.37348 1.05722 0.91194 0.90512 1.24971 0.94080 0.97681 0.96013 1.69955 1.33669 1.21136 1.28024 0.87287 0.76051 0.79748 0.85036 1.21405 1.23446 1.17557 1.21208 0.93255 0.97921 0.94640 0.90475 0.91936 0.92006 0.76396 0.85791 0.85175 0.85190 0.89869 0.89867 0.91551 0.91578 0.77334 0.77426 0.92215 0.92109 0.96032 0.92617 0.93419 0.92794 0.94132 0.95227 0.92594 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.70 59.85 0.64 1.07 16 2 N -0.73 -4.38 5.66 -68.04 -0.39 -4.76 16 3 C 0.56 5.39 7.77 -12.33 -0.10 5.29 16 4 O -0.53 -7.28 16.35 5.32 0.09 -7.19 16 5 C -0.14 -1.15 5.87 -104.96 -0.62 -1.77 16 6 C -0.09 -0.52 9.54 -39.18 -0.37 -0.89 16 7 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 8 C -0.08 -0.55 9.69 -39.49 -0.38 -0.93 16 9 C -0.08 -0.65 5.13 -104.68 -0.54 -1.19 16 10 C -0.09 -0.66 5.45 -27.89 -0.15 -0.81 16 11 C 0.15 1.55 5.66 -4.04 -0.02 1.52 16 12 N -0.76 -9.00 5.56 -65.22 -0.36 -9.36 16 13 C 0.70 11.87 8.57 -86.92 -0.74 11.12 16 14 O -0.59 -12.77 16.34 5.29 0.09 -12.68 16 15 N -0.74 -12.34 5.01 -65.22 -0.33 -12.66 16 16 C 0.16 3.29 4.49 -4.04 -0.02 3.27 16 17 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 18 C -0.14 -2.84 7.53 37.16 0.28 -2.57 16 19 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 20 C -0.51 -13.84 8.62 -34.44 -0.30 -14.14 16 21 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 22 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 23 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 24 Si 0.89 21.16 22.79 -169.99 -3.87 17.28 16 25 H -0.29 -6.84 7.10 56.52 0.40 -6.44 16 26 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.25 -5.40 4.65 56.52 0.26 -5.13 16 28 C -0.05 -0.47 9.24 -39.18 -0.36 -0.83 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 1.15 6.86 -40.82 -0.28 0.87 16 33 H 0.12 0.33 6.41 -52.49 -0.34 -0.01 16 34 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.08 0.54 8.08 -51.92 -0.42 0.12 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 3.45 8.49 -40.82 -0.35 3.10 16 41 H 0.39 5.56 6.27 -40.82 -0.26 5.30 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 44 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 45 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 46 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 49 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 51 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -36.44 404.24 -8.75 -45.19 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.87 Total: 6.18 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.97 Total: -2.12 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.30 Total: -52.75 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.17 Total: -19.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -3.87 Total: 17.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.44 -8.75 -45.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458428657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.403 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds