Wall clock time and date at job start Wed Apr 1 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34768 * 120.00214 * 2 1 4 4 O 1.21555 * 120.00204 * 359.97438 * 3 2 1 5 5 C 1.47851 * 119.99875 * 180.02562 * 3 2 1 6 6 C 1.39597 * 120.14450 * 359.97438 * 5 3 2 7 7 C 1.37937 * 119.84924 * 179.97438 * 6 5 3 8 8 C 1.38378 * 120.15046 * 0.27307 * 7 6 5 9 9 C 1.38341 * 120.28669 * 359.45105 * 8 7 6 10 10 C 1.50700 * 119.92329 * 180.25151 * 9 8 7 11 11 C 1.52995 * 109.47389 * 270.29538 * 10 9 8 12 12 N 1.46503 * 109.47513 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99937 * 180.02562 * 12 11 10 14 14 O 1.21581 * 120.00711 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99643 * 180.02562 * 13 12 11 16 16 C 1.46503 * 120.00182 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47414 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46950 * 300.00223 * 17 16 15 19 19 C 1.52995 * 109.46825 * 60.00102 * 17 16 15 20 20 C 1.50697 * 109.47319 * 180.02562 * 17 16 15 21 21 H 1.08004 * 119.99857 * 1.35104 * 20 17 16 22 22 C 1.37874 * 120.00043 * 181.34769 * 20 17 16 23 23 N 1.31514 * 119.99850 * 193.97541 * 22 20 17 24 24 Si 1.86803 * 120.00250 * 13.97529 * 22 20 17 25 25 H 1.48496 * 109.46767 * 84.54637 * 24 22 20 26 26 H 1.48497 * 109.47029 * 204.54747 * 24 22 20 27 27 H 1.48505 * 109.46832 * 324.55181 * 24 22 20 28 28 C 1.37973 * 120.14877 * 0.54991 * 9 8 7 29 29 H 1.08999 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46961 * 300.00514 * 1 2 3 31 31 H 1.09003 * 109.46738 * 59.99725 * 1 2 3 32 32 H 0.97002 * 119.99217 * 179.97438 * 2 1 3 33 33 H 1.07995 * 120.07018 * 0.02562 * 6 5 3 34 34 H 1.08000 * 119.92198 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.85443 * 179.70182 * 8 7 6 36 36 H 1.08999 * 109.47393 * 30.29817 * 10 9 8 37 37 H 1.09010 * 109.46872 * 150.29908 * 10 9 8 38 38 H 1.09005 * 109.47253 * 300.00063 * 11 10 9 39 39 H 1.09004 * 109.47214 * 60.00316 * 11 10 9 40 40 H 0.97005 * 119.99721 * 0.02562 * 12 11 10 41 41 H 0.97009 * 120.00429 * 0.02562 * 15 13 12 42 42 H 1.08997 * 109.47246 * 300.00337 * 16 15 13 43 43 H 1.09010 * 109.46687 * 60.00469 * 16 15 13 44 44 H 1.08997 * 109.46799 * 69.36955 * 18 17 16 45 45 H 1.09001 * 109.46935 * 189.36230 * 18 17 16 46 46 H 1.08995 * 109.47386 * 309.36515 * 18 17 16 47 47 H 1.09004 * 109.47225 * 60.00531 * 19 17 16 48 48 H 1.09002 * 109.46946 * 179.97438 * 19 17 16 49 49 H 1.09000 * 109.47809 * 299.99970 * 19 17 16 50 50 H 0.97006 * 120.00005 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.07802 * 179.74449 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6174 1.1670 -0.0006 6 6 4.3184 -0.0402 -0.0006 7 6 5.6977 -0.0332 -0.0016 8 6 6.3867 1.1669 0.0030 9 6 5.6980 2.3667 -0.0027 10 6 6.4566 3.6689 -0.0034 11 6 6.7144 4.1097 1.4389 12 7 7.4514 5.3758 1.4383 13 6 7.7918 5.9579 2.6052 14 8 7.4878 5.4321 3.6584 15 7 8.4693 7.1230 2.6046 16 6 8.8389 7.7561 3.8730 17 6 9.5942 9.0569 3.5928 18 6 10.8590 8.7491 2.7887 19 6 8.6986 10.0042 2.7919 20 6 9.9749 9.7078 4.8975 21 1 9.7243 9.2296 5.8329 22 6 10.6432 10.9138 4.8971 23 7 11.2156 11.3487 5.9984 24 14 10.7356 11.9299 3.3324 25 1 9.5105 12.7599 3.2083 26 1 11.9285 12.8128 3.3853 27 1 10.8411 11.0247 2.1599 28 6 4.3183 2.3739 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.9499 -0.8401 0.0004 33 1 3.7818 -0.9775 -0.0006 34 1 6.2412 -0.9665 -0.0021 35 1 7.4666 1.1668 0.0070 36 1 7.4081 3.5349 -0.5179 37 1 5.8700 4.4308 -0.5168 38 1 5.7629 4.2437 1.9535 39 1 7.3010 3.3478 1.9523 40 1 7.6943 5.7952 0.5980 41 1 8.7116 7.5429 1.7643 42 1 7.9378 7.9758 4.4456 43 1 9.4766 7.0810 4.4438 44 1 10.5823 8.4340 1.7827 45 1 11.4797 9.6433 2.7314 46 1 11.4162 7.9509 3.2792 47 1 7.7976 10.2235 3.3648 48 1 9.2365 10.9310 2.5927 49 1 8.4236 9.5332 1.8482 50 1 11.6861 12.1970 5.9980 51 1 3.7819 3.3112 -0.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458428657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:57 Heat of formation + Delta-G solvation = -61.356631 kcal Electronic energy + Delta-G solvation = -29191.790290 eV Core-core repulsion = 25090.282887 eV Total energy + Delta-G solvation = -4101.507403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31690 -41.03737 -39.59110 -38.55397 -36.46800 -35.77636 -34.99437 -33.83525 -33.15071 -32.15520 -29.71436 -28.01154 -27.89360 -27.35916 -26.77129 -24.66988 -24.10612 -22.55942 -22.04768 -21.23302 -20.91507 -19.57561 -18.73457 -18.02690 -17.35944 -17.25838 -17.08050 -17.00569 -16.74130 -16.31702 -15.99577 -15.70291 -15.40037 -15.24790 -15.20174 -14.83033 -14.69101 -14.39617 -14.35760 -14.16513 -13.98050 -13.89357 -13.73329 -13.61822 -13.13885 -12.96259 -12.72478 -12.69641 -12.37642 -12.29352 -12.12601 -11.99391 -11.93585 -11.74582 -11.35579 -11.14541 -11.03561 -10.60400 -10.38430 -10.33532 -10.31184 -9.89059 -9.75662 -9.68373 -8.28503 -6.30264 -0.15620 0.35348 1.37922 1.39525 1.52608 1.73139 1.84934 2.17962 2.20752 2.36365 2.84513 3.07500 3.38257 3.67761 3.81028 3.92152 4.06141 4.10743 4.13130 4.19447 4.35208 4.35631 4.42401 4.43453 4.52544 4.58172 4.58561 4.75909 4.80465 4.84964 4.88570 4.92457 4.95208 4.98837 5.01783 5.08324 5.11254 5.20911 5.29272 5.34042 5.42285 5.45478 5.52127 5.58106 5.58303 5.74599 5.82069 5.92703 6.09072 6.32890 6.45581 6.73798 7.13320 7.19245 7.34364 7.64935 8.88687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.001589 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.612954 B =17617.813049 C =18049.834384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.549 3.451 4 O -0.587 6.587 5 C -0.157 4.157 6 C -0.081 4.081 7 C -0.124 4.124 8 C -0.086 4.086 9 C -0.095 4.095 10 C -0.079 4.079 11 C 0.147 3.853 12 N -0.731 5.731 13 C 0.696 3.304 14 O -0.645 6.645 15 N -0.725 5.725 16 C 0.177 3.823 17 C 0.027 3.973 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.518 4.518 21 H 0.026 0.974 22 C 0.016 3.984 23 N -0.946 5.946 24 Si 0.946 3.054 25 H -0.284 1.284 26 H -0.315 1.315 27 H -0.201 1.201 28 C -0.074 4.074 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.418 0.582 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.043 0.957 48 H 0.035 0.965 49 H 0.075 0.925 50 H 0.264 0.736 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -28.472 -23.489 39.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.338 3.662 4 O -0.469 6.469 5 C -0.160 4.160 6 C -0.099 4.099 7 C -0.141 4.141 8 C -0.104 4.104 9 C -0.096 4.096 10 C -0.117 4.117 11 C 0.023 3.977 12 N -0.388 5.388 13 C 0.395 3.605 14 O -0.527 6.527 15 N -0.381 5.381 16 C 0.052 3.948 17 C 0.025 3.975 18 C -0.195 4.195 19 C -0.202 4.202 20 C -0.556 4.556 21 H 0.044 0.956 22 C -0.182 4.182 23 N -0.586 5.586 24 Si 0.776 3.224 25 H -0.211 1.211 26 H -0.245 1.245 27 H -0.125 1.125 28 C -0.093 4.093 29 H 0.135 0.865 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.256 0.744 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.251 0.749 41 H 0.247 0.753 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.579 -28.128 -22.451 38.830 hybrid contribution 0.289 1.160 -0.080 1.198 sum -14.290 -26.968 -22.531 37.936 Atomic orbital electron populations 1.21722 0.78345 1.04583 1.01490 1.45645 1.08565 1.08350 1.74368 1.18721 0.88105 0.83925 0.75465 1.90765 1.70994 1.33093 1.52000 1.19922 0.91901 0.95566 1.08570 1.21609 0.95199 0.96787 0.96355 1.21506 0.93837 0.99392 0.99388 1.21676 1.01631 0.91568 0.95541 1.19717 0.92602 0.95887 1.01368 1.20725 1.01960 0.94269 0.94722 1.21119 0.95126 0.84002 0.97501 1.44883 1.61531 1.25672 1.06732 1.16196 0.78832 0.81034 0.84392 1.90885 1.62418 1.66759 1.32600 1.45086 1.59899 1.22816 1.10338 1.20864 0.97103 0.92988 0.83809 1.18676 0.93070 0.91522 0.94184 1.22189 0.97885 1.00659 0.98789 1.22280 0.99354 0.98788 0.99799 1.21025 1.36736 1.05846 0.92042 0.95600 1.25878 0.93639 0.98893 0.99745 1.70121 1.35566 1.21814 1.31064 0.86311 0.75547 0.78242 0.82346 1.21106 1.24463 1.12484 1.21205 0.94152 0.97654 0.96268 0.86535 0.93380 0.93006 0.74362 0.82509 0.82114 0.83202 0.87343 0.89264 0.93920 0.92310 0.74884 0.75339 0.94563 0.94446 0.91377 0.93637 0.94112 0.93741 0.94652 0.90643 0.92711 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.70 127.77 1.37 2.10 16 2 N -0.72 -7.75 5.66 -487.47 -2.76 -10.51 16 3 C 0.55 10.82 7.77 86.79 0.67 11.49 16 4 O -0.59 -17.20 16.35 -3.89 -0.06 -17.26 16 5 C -0.16 -2.57 5.87 -20.09 -0.12 -2.69 16 6 C -0.08 -0.72 9.54 22.53 0.21 -0.51 16 7 C -0.12 -0.94 10.03 22.23 0.22 -0.72 16 8 C -0.09 -0.87 9.69 22.33 0.22 -0.66 16 9 C -0.10 -1.34 5.13 -19.90 -0.10 -1.44 16 10 C -0.08 -0.96 5.45 29.85 0.16 -0.80 16 11 C 0.15 2.95 5.66 86.38 0.49 3.44 16 12 N -0.73 -15.73 5.56 -478.54 -2.66 -18.39 16 13 C 0.70 22.78 8.57 179.06 1.53 24.31 16 14 O -0.64 -28.05 16.34 -3.97 -0.06 -28.12 16 15 N -0.73 -22.64 5.01 -478.53 -2.40 -25.04 16 16 C 0.18 7.29 4.49 86.38 0.39 7.68 16 17 C 0.03 1.14 0.50 -52.93 -0.03 1.12 16 18 C -0.14 -5.16 7.53 71.98 0.54 -4.62 16 19 C -0.15 -5.45 7.52 71.98 0.54 -4.91 16 20 C -0.52 -28.96 8.62 25.60 0.22 -28.74 16 21 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 22 C 0.02 0.90 5.32 84.65 0.45 1.35 16 23 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 24 Si 0.95 42.78 22.79 68.60 1.56 44.35 16 25 H -0.28 -12.65 7.10 99.48 0.71 -11.94 16 26 H -0.32 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.20 -7.57 4.65 99.48 0.46 -7.11 16 28 C -0.07 -1.37 9.24 22.53 0.21 -1.16 16 29 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.42 1.32 6.86 -92.71 -0.64 0.68 16 33 H 0.16 0.22 6.41 -2.91 -0.02 0.20 16 34 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 35 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.11 0.80 8.09 -2.39 -0.02 0.78 16 37 H 0.09 0.99 8.08 -2.38 -0.02 0.97 16 38 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.41 5.63 8.49 -92.70 -0.79 4.84 16 41 H 0.41 9.74 6.27 -92.70 -0.58 9.16 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16 45 H 0.04 1.80 4.30 -2.39 -0.01 1.79 16 46 H 0.04 1.56 8.12 -2.39 -0.02 1.54 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.04 1.37 2.25 -2.39 -0.01 1.37 16 49 H 0.07 2.13 6.86 -2.39 -0.02 2.12 16 50 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 51 H 0.12 2.54 7.65 -2.91 -0.02 2.52 16 Total: -1.00 -87.30 404.24 -0.37 -87.67 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -1.27 Total: 20.92 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.99 Total: 5.25 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -7.52 Total: -112.81 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.13 Total: -45.38 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.56 Total: 44.35 kcal Total: -87.30 -0.37 -87.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458428657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.315 kcal (2) G-P(sol) polarization free energy of solvation -87.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds