Wall clock time and date at job start Wed Apr 1 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47515 * 2 1 4 4 C 1.53003 * 109.46874 * 120.00283 * 2 1 3 5 5 H 1.09005 * 109.46602 * 184.59229 * 4 2 1 6 6 N 1.46898 * 109.47062 * 304.58901 * 4 2 1 7 7 C 1.46900 * 110.99940 * 261.95975 * 6 4 2 8 8 C 1.53174 * 109.54220 * 275.03225 * 7 6 4 9 9 C 1.53113 * 109.15689 * 183.24611 * 8 7 6 10 10 O 1.42895 * 109.48830 * 57.47210 * 9 8 7 11 11 C 1.42907 * 114.10297 * 298.89479 * 10 9 8 12 12 C 1.53093 * 109.41670 * 61.15277 * 11 10 9 13 13 C 1.50694 * 109.47149 * 64.59179 * 4 2 1 14 14 O 1.21276 * 120.00049 * 239.99569 * 13 4 2 15 15 N 1.34784 * 120.00045 * 60.00112 * 13 4 2 16 16 C 1.39472 * 119.99669 * 175.12551 * 15 13 4 17 17 C 1.38595 * 119.57610 * 185.35888 * 16 15 13 18 18 C 1.40810 * 118.79596 * 179.78136 * 17 16 15 19 19 C 1.41541 * 120.99614 * 180.25847 * 18 17 16 20 20 H 1.08003 * 120.00200 * 209.68499 * 19 18 17 21 21 C 1.40026 * 120.00333 * 29.68631 * 19 18 17 22 22 N 1.30746 * 120.00080 * 8.17771 * 21 19 18 23 23 Si 1.86799 * 120.00380 * 188.18597 * 21 19 18 24 24 H 1.48500 * 109.47530 * 94.99084 * 23 21 19 25 25 H 1.48499 * 109.46956 * 214.99542 * 23 21 19 26 26 H 1.48500 * 109.46995 * 334.98684 * 23 21 19 27 27 C 1.41176 * 118.00495 * 0.48670 * 18 17 16 28 28 C 1.37590 * 119.01466 * 359.74924 * 27 18 17 29 29 N 1.32076 * 121.10822 * 0.02562 * 28 27 18 30 30 H 1.09001 * 109.46948 * 59.99449 * 1 2 3 31 31 H 1.09006 * 109.46696 * 300.00011 * 1 2 3 32 32 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46696 * 239.99989 * 2 1 3 34 34 H 1.09008 * 109.47087 * 296.67344 * 3 2 1 35 35 H 1.09001 * 109.46983 * 56.66988 * 3 2 1 36 36 H 1.08997 * 109.47540 * 176.66823 * 3 2 1 37 37 H 1.00896 * 110.99598 * 138.00724 * 6 4 2 38 38 H 1.08999 * 109.54782 * 35.21501 * 7 6 4 39 39 H 1.09000 * 109.52607 * 303.06042 * 8 7 6 40 40 H 1.08995 * 109.52455 * 63.25397 * 8 7 6 41 41 H 1.09005 * 109.39839 * 297.49420 * 9 8 7 42 42 H 1.08995 * 109.48233 * 177.50631 * 9 8 7 43 43 H 1.09002 * 109.47183 * 301.17680 * 11 10 9 44 44 H 1.08995 * 109.49476 * 181.14924 * 11 10 9 45 45 H 1.08994 * 109.52383 * 182.48775 * 12 11 10 46 46 H 1.08998 * 109.57197 * 62.32976 * 12 11 10 47 47 H 0.97000 * 119.99907 * 355.12988 * 15 13 4 48 48 H 1.08006 * 120.60538 * 0.02562 * 17 16 15 49 49 H 0.97001 * 120.00777 * 180.02562 * 22 21 19 50 50 H 1.07998 * 120.48930 * 179.77657 * 27 18 17 51 51 H 1.07998 * 119.44188 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1269 -0.6506 1.2913 6 7 1.4619 -0.0958 2.4461 7 6 2.4032 0.8574 3.0487 8 6 3.3614 0.1109 3.9819 9 6 4.2852 1.1218 4.6667 10 8 3.4993 2.0820 5.3754 11 6 2.6196 2.8432 4.5453 12 6 1.6275 1.9018 3.8574 13 6 1.6326 -2.1711 1.1936 14 8 0.9300 -2.6375 2.0652 15 7 2.0493 -2.9496 0.1753 16 6 1.7580 -4.3136 0.1759 17 6 2.2843 -5.1259 -0.8161 18 6 1.9834 -6.5013 -0.7970 19 6 2.5003 -7.3743 -1.7840 20 1 1.9441 -8.2544 -2.0713 21 6 3.7327 -7.0970 -2.3881 22 7 4.4803 -6.1260 -1.9323 23 14 4.3088 -8.1141 -3.8451 24 1 3.9365 -7.4261 -5.1073 25 1 5.7839 -8.2739 -3.7849 26 1 3.6640 -9.4511 -3.8013 27 6 1.1468 -6.9827 0.2332 28 6 0.6675 -6.0981 1.1718 29 7 0.9772 -4.8151 1.1211 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.7263 1.9388 -0.9184 35 1 1.6288 1.9732 0.8586 36 1 3.1284 1.4430 0.0597 37 1 1.1754 -0.7937 3.1161 38 1 2.9725 1.3540 2.2629 39 1 2.7888 -0.4272 4.7373 40 1 3.9570 -0.5952 3.4034 41 1 4.8877 1.6298 3.9136 42 1 4.9398 0.6009 5.3653 43 1 3.2004 3.3736 3.7907 44 1 2.0744 3.5624 5.1564 45 1 0.9842 2.4751 3.1900 46 1 1.0179 1.4009 4.6095 47 1 2.5517 -2.5612 -0.5580 48 1 2.9169 -4.7122 -1.5875 49 1 5.3339 -5.9335 -2.3509 50 1 0.8872 -8.0298 0.2841 51 1 0.0273 -6.4589 1.9632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532438279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:23 Heat of formation + Delta-G solvation = -55.269522 kcal Electronic energy + Delta-G solvation = -31411.436603 eV Core-core repulsion = 27310.193157 eV Total energy + Delta-G solvation = -4101.243446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.37269 -39.42487 -38.18686 -36.59605 -34.65110 -34.25125 -33.67141 -31.40474 -30.82978 -30.56373 -28.93220 -27.18564 -26.41622 -25.99930 -23.73982 -23.55117 -22.09120 -21.74997 -20.60018 -20.41625 -19.18835 -17.76841 -17.43306 -16.49264 -16.24379 -15.88424 -15.69058 -15.28904 -15.03064 -14.80813 -14.49896 -14.30506 -14.24683 -14.05451 -13.86567 -13.52526 -13.24133 -13.11902 -12.81536 -12.63217 -12.60232 -12.26163 -12.14294 -12.10471 -11.56197 -11.50760 -11.43705 -11.32393 -11.26487 -11.04088 -10.94611 -10.89136 -10.72044 -10.42192 -10.31176 -10.17318 -9.87482 -9.79771 -9.43211 -9.37568 -8.48030 -7.99212 -7.79307 -7.08694 -6.79824 -4.66786 2.47131 2.75408 2.99716 3.03383 3.13721 3.38229 3.45672 3.64654 3.83363 4.05210 4.53018 4.59895 4.65443 4.74673 4.78831 4.84759 4.94173 4.97318 5.02718 5.19395 5.21263 5.30390 5.38050 5.44071 5.46671 5.59473 5.61997 5.69141 5.74967 5.79791 5.86698 5.91899 5.95415 5.98726 6.05564 6.09657 6.31480 6.51536 6.54273 6.57625 6.74138 6.88161 6.93161 6.95801 7.07553 7.30717 7.36690 7.41787 7.72517 7.89199 8.15853 8.37314 8.64826 8.71672 8.79830 9.61319 10.08300 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002461 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.310421 B =11375.167652 C =11470.565390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.143 4.143 4 C 0.072 3.928 5 H 0.073 0.927 6 N -0.660 5.660 7 C 0.083 3.917 8 C -0.190 4.190 9 C 0.066 3.934 10 O -0.384 6.384 11 C 0.061 3.939 12 C -0.141 4.141 13 C 0.497 3.503 14 O -0.477 6.477 15 N -0.654 5.654 16 C 0.334 3.666 17 C -0.234 4.234 18 C 0.144 3.856 19 C -0.457 4.457 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.799 5.799 23 Si 0.915 3.085 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.279 4.279 28 C 0.116 3.884 29 N -0.550 5.550 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.360 0.640 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.407 0.593 48 H 0.129 0.871 49 H 0.280 0.720 50 H 0.103 0.897 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 16.892 4.056 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C -0.201 4.201 4 C -0.042 4.042 5 H 0.090 0.910 6 N -0.296 5.296 7 C -0.027 4.027 8 C -0.229 4.229 9 C -0.011 4.011 10 O -0.303 6.303 11 C -0.016 4.016 12 C -0.180 4.180 13 C 0.281 3.719 14 O -0.347 6.347 15 N -0.300 5.300 16 C 0.109 3.891 17 C -0.259 4.259 18 C 0.135 3.865 19 C -0.489 4.489 20 H 0.100 0.900 21 C -0.142 4.142 22 N -0.425 5.425 23 Si 0.739 3.261 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.303 4.303 28 C -0.038 4.038 29 N -0.269 5.269 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.184 0.816 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.242 0.758 48 H 0.147 0.853 49 H 0.091 0.909 50 H 0.121 0.879 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.110 17.772 5.196 18.517 hybrid contribution 1.754 -1.661 -1.666 2.935 sum 1.644 16.112 3.530 16.576 Atomic orbital electron populations 1.21702 0.94005 1.02081 1.01793 1.21077 0.97497 0.96169 0.95046 1.21868 1.00053 0.95998 1.02148 1.21611 0.98200 0.90848 0.93564 0.90968 1.60588 1.38564 1.21539 1.08877 1.21810 0.91975 0.93578 0.95348 1.23005 0.99931 0.99467 1.00507 1.22500 0.92613 0.89677 0.96313 1.87932 1.55547 1.51903 1.34911 1.22612 0.91369 0.93275 0.94383 1.22156 0.98583 0.97461 0.99775 1.20677 0.81079 0.87668 0.82506 1.90757 1.33514 1.73447 1.36941 1.43404 1.55534 1.07019 1.24084 1.18210 0.94707 0.82808 0.93382 1.21608 1.08739 0.93778 1.01781 1.17595 0.87761 0.91131 0.90002 1.19570 1.03228 1.08264 1.17840 0.90039 1.25926 0.96248 0.94987 0.97061 1.69740 1.10306 1.26203 1.36256 0.86186 0.78238 0.80748 0.80906 1.19332 1.20185 1.18502 1.21976 1.09615 0.99177 0.99496 1.21774 0.97000 0.88287 0.96766 1.67203 1.18859 1.14874 1.25937 0.93474 0.90955 0.93000 0.91195 0.92739 0.91580 0.93329 0.81569 0.89918 0.90541 0.90992 0.93260 0.88941 0.93311 0.88810 0.90169 0.90813 0.75787 0.85335 0.90864 0.87892 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.80 37.16 0.33 -1.41 16 2 C -0.08 -0.88 2.69 -90.62 -0.24 -1.13 16 3 C -0.14 -1.29 7.87 37.15 0.29 -1.00 16 4 C 0.07 0.92 2.19 -68.87 -0.15 0.77 16 5 H 0.07 0.86 7.16 -51.93 -0.37 0.49 16 6 N -0.66 -8.01 4.88 -100.76 -0.49 -8.50 16 7 C 0.08 0.82 1.50 -67.53 -0.10 0.72 16 8 C -0.19 -1.96 5.39 -26.58 -0.14 -2.10 16 9 C 0.07 0.62 6.84 37.22 0.25 0.87 16 10 O -0.38 -4.08 10.77 -35.23 -0.38 -4.46 16 11 C 0.06 0.50 6.84 37.21 0.25 0.76 16 12 C -0.14 -1.26 5.75 -26.59 -0.15 -1.41 16 13 C 0.50 8.88 6.12 -10.98 -0.07 8.81 16 14 O -0.48 -10.34 13.69 5.56 0.08 -10.26 16 15 N -0.65 -12.40 5.30 -11.49 -0.06 -12.46 16 16 C 0.33 7.90 7.41 -154.71 -1.15 6.76 16 17 C -0.23 -5.82 8.58 -38.48 -0.33 -6.15 16 18 C 0.14 3.72 5.57 -106.55 -0.59 3.13 16 19 C -0.46 -11.63 9.12 -37.65 -0.34 -11.97 16 20 H 0.08 1.99 7.86 -52.48 -0.41 1.58 16 21 C 0.08 1.80 5.32 -17.34 -0.09 1.71 16 22 N -0.80 -19.48 10.84 55.55 0.60 -18.88 16 23 Si 0.91 17.84 29.57 -169.99 -5.03 12.82 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 27 C -0.28 -6.77 9.90 -38.70 -0.38 -7.15 16 28 C 0.12 2.75 11.15 -17.68 -0.20 2.56 16 29 N -0.55 -13.74 7.85 -12.53 -0.10 -13.84 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 32 H 0.05 0.80 7.37 -51.93 -0.38 0.42 16 33 H 0.07 0.77 7.34 -51.93 -0.38 0.39 16 34 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.60 6.71 -51.93 -0.35 0.25 16 36 H 0.05 0.40 7.92 -51.93 -0.41 -0.01 16 37 H 0.36 5.24 6.76 -39.29 -0.27 4.98 16 38 H 0.08 0.76 5.84 -51.93 -0.30 0.45 16 39 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.07 0.78 7.71 -51.93 -0.40 0.38 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.41 6.44 7.92 -40.82 -0.32 6.12 16 48 H 0.13 3.18 6.32 -52.48 -0.33 2.85 16 49 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 50 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 51 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 399.25 15.07 6.02 6.02 Total: -1.00 -29.90 399.25 -10.28 -40.18 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -8.10 Total: 15.63 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.82 Total: -6.25 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.05 Total: -53.68 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.30 Total: -14.73 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.90 -10.28 -40.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532438279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.088 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds