Wall clock time and date at job start Wed Apr 1 2020 04:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 120.00315 * 2 1 4 4 N 1.34777 * 119.99676 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00067 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47194 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.46773 * 304.99751 * 6 5 4 8 8 C 1.53000 * 109.47038 * 184.99707 * 6 5 4 9 9 C 1.50700 * 109.46856 * 66.11922 * 8 6 5 10 10 O 1.21276 * 120.00212 * 6.39686 * 9 8 6 11 11 N 1.34780 * 119.99825 * 186.40424 * 9 8 6 12 12 C 1.39473 * 120.00248 * 175.13993 * 11 9 8 13 13 C 1.38592 * 119.58042 * 185.39253 * 12 11 9 14 14 C 1.40812 * 118.79649 * 179.97438 * 13 12 11 15 15 C 1.41536 * 120.99834 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00279 * 147.01742 * 15 14 13 17 17 C 1.40038 * 120.00031 * 327.00975 * 15 14 13 18 18 N 1.30741 * 119.99859 * 357.22824 * 17 15 14 19 19 Si 1.86803 * 119.99875 * 177.22111 * 17 15 14 20 20 H 1.48495 * 109.46835 * 60.00786 * 19 17 15 21 21 H 1.48501 * 109.46692 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47285 * 300.00314 * 19 17 15 23 23 C 1.41180 * 118.00537 * 0.02562 * 14 13 12 24 24 C 1.37594 * 119.01476 * 359.97438 * 23 14 13 25 25 N 1.32083 * 121.10778 * 359.74787 * 24 23 14 26 26 C 1.52995 * 109.47192 * 65.00004 * 6 5 4 27 27 C 1.52997 * 109.47161 * 185.06993 * 26 6 5 28 28 C 1.53005 * 109.47197 * 64.20771 * 27 26 6 29 29 C 1.53008 * 109.47266 * 184.20648 * 27 26 6 30 30 H 1.08998 * 109.47171 * 270.00602 * 1 2 3 31 31 H 1.08997 * 109.47060 * 30.00207 * 1 2 3 32 32 H 1.09001 * 109.47442 * 150.00507 * 1 2 3 33 33 H 0.97003 * 120.00407 * 359.97438 * 4 2 1 34 34 H 1.08996 * 109.47260 * 59.99549 * 5 4 2 35 35 H 1.08999 * 109.47257 * 299.99825 * 5 4 2 36 36 H 1.08997 * 109.47252 * 186.11806 * 8 6 5 37 37 H 1.09001 * 109.47170 * 306.11857 * 8 6 5 38 38 H 0.96995 * 119.99988 * 355.12754 * 11 9 8 39 39 H 1.07998 * 120.60339 * 359.97438 * 13 12 11 40 40 H 0.97000 * 120.00066 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.49132 * 179.97438 * 23 14 13 42 42 H 1.07995 * 119.44171 * 179.97438 * 24 23 14 43 43 H 1.08999 * 109.46975 * 305.07027 * 26 6 5 44 44 H 1.09002 * 109.47725 * 65.06822 * 26 6 5 45 45 H 1.09002 * 109.47548 * 304.20667 * 27 26 6 46 46 H 1.08998 * 109.46822 * 179.97438 * 28 27 26 47 47 H 1.09001 * 109.46835 * 299.99895 * 28 27 26 48 48 H 1.09002 * 109.46972 * 60.00090 * 28 27 26 49 49 H 1.08997 * 109.46736 * 59.99942 * 29 27 26 50 50 H 1.08994 * 109.47080 * 180.02562 * 29 27 26 51 51 H 1.09002 * 109.46853 * 300.00445 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1557 -2.6099 0.0023 7 1 3.7207 -3.1483 0.8443 8 6 5.6805 -2.6117 0.1285 9 6 6.0732 -2.0742 1.4805 10 8 5.2203 -1.8333 2.3084 11 7 7.3723 -1.8610 1.7696 12 6 7.7292 -1.2694 2.9811 13 6 9.0564 -0.9516 3.2225 14 6 9.3982 -0.3543 4.4510 15 6 10.7391 -0.0110 4.7465 16 1 10.9533 0.8548 5.3556 17 6 11.7882 -0.7941 4.2493 18 7 11.5279 -1.8726 3.5576 19 14 13.5595 -0.2975 4.5740 20 1 13.8026 -0.2604 6.0385 21 1 14.4735 -1.2845 3.9450 22 1 13.8105 1.0472 3.9963 23 6 8.3634 -0.1090 5.3795 24 6 7.0743 -0.4596 5.0502 25 7 6.7944 -1.0134 3.8842 26 6 3.7514 -3.2948 -1.3047 27 6 4.1499 -4.7710 -1.2514 28 6 3.3594 -5.4730 -0.1454 29 6 3.8413 -5.4315 -2.5966 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3634 -0.8900 -0.5137 33 1 1.6958 -2.0073 0.0013 34 1 4.0088 -0.6533 0.8910 35 1 4.0095 -0.6538 -0.8889 36 1 6.0528 -3.6304 0.0204 37 1 6.1104 -1.9831 -0.6513 38 1 8.0590 -2.1193 1.1351 39 1 9.8147 -1.1584 2.4819 40 1 12.2546 -2.4148 3.2129 41 1 8.5804 0.3470 6.3342 42 1 6.2774 -0.2755 5.7555 43 1 2.6727 -3.2142 -1.4386 44 1 4.2582 -2.8116 -2.1401 45 1 5.2167 -4.8522 -1.0431 46 1 3.6430 -6.5248 -0.1077 47 1 3.5793 -5.0025 0.8130 48 1 2.2926 -5.3919 -0.3537 49 1 4.4044 -4.9314 -3.3846 50 1 4.1247 -6.4833 -2.5585 51 1 2.7745 -5.3503 -2.8050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573195928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:04 Heat of formation + Delta-G solvation = -65.805672 kcal Electronic energy + Delta-G solvation = -30537.092063 eV Core-core repulsion = 26435.391735 eV Total energy + Delta-G solvation = -4101.700328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.12333 -39.38267 -38.26856 -37.26061 -34.91155 -34.26657 -33.68090 -32.67194 -30.54523 -30.11178 -28.93925 -27.40663 -27.15381 -25.98082 -25.81501 -22.18453 -21.87693 -21.18349 -20.54889 -19.93833 -19.27735 -17.64751 -17.16087 -16.86312 -16.42455 -15.80314 -15.50761 -15.27652 -15.11364 -14.78375 -14.48476 -14.20569 -14.06518 -13.92091 -13.68538 -13.42139 -13.16606 -12.90679 -12.83503 -12.76861 -12.56919 -12.54724 -12.39997 -12.22795 -11.99425 -11.72087 -11.66288 -11.41926 -11.29561 -11.20858 -10.91107 -10.76855 -10.57817 -10.51697 -10.28804 -10.16324 -9.89827 -9.69737 -9.39538 -9.35561 -8.97534 -7.91006 -7.73988 -7.03654 -6.71523 -4.62601 2.53844 2.64880 2.82037 3.02235 3.05365 3.18899 3.21632 3.45805 3.63207 3.88413 4.40455 4.58304 4.62273 4.71595 4.74286 4.85360 4.97110 5.02961 5.06923 5.21944 5.27349 5.35194 5.36728 5.40674 5.49646 5.57560 5.61881 5.62849 5.67372 5.68191 5.76779 5.78477 5.91993 5.99048 6.02587 6.16588 6.21987 6.26699 6.44868 6.57856 6.64120 6.78642 6.96168 7.13568 7.36723 7.46173 7.47995 7.78560 7.95847 8.21956 8.22565 8.42928 8.70413 8.77488 8.88420 9.65766 10.15985 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.002486 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.733474 B =11258.786704 C =12802.456462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.547 6.547 4 N -0.725 5.725 5 C 0.118 3.882 6 C -0.084 4.084 7 H 0.093 0.907 8 C -0.137 4.137 9 C 0.494 3.506 10 O -0.479 6.479 11 N -0.659 5.659 12 C 0.333 3.667 13 C -0.230 4.230 14 C 0.144 3.856 15 C -0.461 4.461 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.805 5.805 19 Si 0.916 3.084 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.276 4.276 24 C 0.114 3.886 25 N -0.547 5.547 26 C -0.110 4.110 27 C -0.101 4.101 28 C -0.152 4.152 29 C -0.147 4.147 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.397 0.603 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.408 0.592 39 H 0.130 0.870 40 H 0.280 0.720 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.088 -7.628 -12.990 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.424 6.424 4 N -0.377 5.377 5 C -0.005 4.005 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.178 4.178 9 C 0.279 3.721 10 O -0.349 6.349 11 N -0.305 5.305 12 C 0.108 3.892 13 C -0.255 4.255 14 C 0.135 3.865 15 C -0.493 4.493 16 H 0.098 0.902 17 C -0.142 4.142 18 N -0.432 5.432 19 Si 0.741 3.259 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.300 4.300 24 C -0.040 4.040 25 N -0.265 5.265 26 C -0.148 4.148 27 C -0.119 4.119 28 C -0.209 4.209 29 C -0.204 4.204 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.242 0.758 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.086 -7.113 -12.765 21.003 hybrid contribution 2.024 -0.322 0.051 2.050 sum -13.062 -7.434 -12.714 19.686 Atomic orbital electron populations 1.21872 0.92036 1.04494 1.04732 1.20763 0.90484 0.83635 0.75904 1.90746 1.70801 1.31450 1.49423 1.46037 1.07727 1.08437 1.75479 1.21555 0.79205 0.96610 1.03147 1.21205 0.94426 0.95687 0.99011 0.88929 1.21765 0.96706 1.03363 0.95966 1.20670 0.82803 0.79267 0.89355 1.90775 1.48628 1.47109 1.48422 1.43492 1.08066 1.60486 1.18476 1.18245 0.90115 0.94854 0.85990 1.21662 0.92752 1.11005 1.00116 1.17599 0.92853 0.87140 0.88873 1.19494 0.89875 1.11236 1.28698 0.90189 1.25898 1.01680 0.93828 0.92790 1.69713 1.34696 1.11532 1.27252 0.86234 0.80679 0.79297 0.79703 1.18972 1.20332 1.18880 1.22017 0.94494 1.12820 1.00669 1.21783 0.94594 0.95213 0.92424 1.67219 1.35147 1.21130 1.03053 1.21738 1.01242 0.94772 0.97042 1.21202 1.00693 0.94650 0.95402 1.21926 0.99881 1.00257 0.98877 1.21837 1.01415 1.00385 0.96765 0.88904 0.89092 0.90442 0.76850 0.89508 0.92123 0.88291 0.89005 0.75758 0.85231 0.90900 0.87889 0.85880 0.91711 0.91562 0.90755 0.92860 0.91966 0.92855 0.92757 0.92805 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.30 36.00 0.37 -0.94 16 2 C 0.51 6.40 7.94 -10.99 -0.09 6.31 16 3 O -0.55 -9.87 17.10 5.56 0.10 -9.77 16 4 N -0.72 -7.88 5.23 -60.30 -0.32 -8.19 16 5 C 0.12 1.53 4.87 -4.04 -0.02 1.51 16 6 C -0.08 -0.88 1.39 -90.62 -0.13 -1.00 16 7 H 0.09 1.08 5.99 -51.93 -0.31 0.77 16 8 C -0.14 -1.55 5.06 -27.88 -0.14 -1.69 16 9 C 0.49 8.62 7.34 -10.98 -0.08 8.54 16 10 O -0.48 -10.25 12.58 5.56 0.07 -10.18 16 11 N -0.66 -12.47 5.39 -11.49 -0.06 -12.53 16 12 C 0.33 8.00 7.42 -154.70 -1.15 6.85 16 13 C -0.23 -5.82 8.57 -38.48 -0.33 -6.15 16 14 C 0.14 3.80 5.55 -106.55 -0.59 3.21 16 15 C -0.46 -11.94 9.12 -37.65 -0.34 -12.29 16 16 H 0.08 1.99 7.85 -52.48 -0.41 1.57 16 17 C 0.07 1.82 5.38 -17.34 -0.09 1.73 16 18 N -0.81 -19.96 10.82 55.55 0.60 -19.36 16 19 Si 0.92 18.23 29.56 -169.99 -5.03 13.21 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.28 -6.84 9.90 -38.70 -0.38 -7.22 16 24 C 0.11 2.77 11.15 -17.68 -0.20 2.57 16 25 N -0.55 -13.90 7.85 -12.52 -0.10 -13.99 16 26 C -0.11 -0.84 4.09 -26.74 -0.11 -0.94 16 27 C -0.10 -0.73 2.78 -90.61 -0.25 -0.98 16 28 C -0.15 -1.15 8.94 37.16 0.33 -0.82 16 29 C -0.15 -0.94 9.19 37.16 0.34 -0.59 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 3.04 7.65 -40.82 -0.31 2.73 16 34 H 0.09 1.54 6.21 -51.93 -0.32 1.22 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.93 6.22 -51.93 -0.32 0.60 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.41 6.30 8.70 -40.82 -0.36 5.94 16 39 H 0.13 3.26 6.38 -52.49 -0.33 2.92 16 40 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 41 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 43 H 0.06 0.44 7.07 -51.93 -0.37 0.07 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.56 6.26 -51.93 -0.33 0.24 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 411.58 15.07 6.20 6.20 Total: -1.00 -34.42 411.58 -9.42 -43.83 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.03 Total: 12.69 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.86 Total: -1.90 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.13 Total: -54.07 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.17 Total: -19.96 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.42 -9.42 -43.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573195928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.974 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds