Wall clock time and date at job start Wed Apr 1 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00200 * 2 1 4 4 O 1.21286 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00231 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.46930 * 179.97438 * 5 3 2 7 7 C 1.38287 * 119.92741 * 269.72387 * 6 5 3 8 8 C 1.38110 * 120.06711 * 179.77154 * 7 6 5 9 9 C 1.38871 * 119.93136 * 0.50233 * 8 7 6 10 10 N 1.39940 * 120.06848 * 179.72393 * 9 8 7 11 11 C 1.34778 * 120.00067 * 213.29154 * 10 9 8 12 12 O 1.21587 * 119.99617 * 5.32174 * 11 10 9 13 13 N 1.34772 * 119.99963 * 185.31992 * 11 10 9 14 14 C 1.46510 * 119.99835 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47113 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47145 * 299.99758 * 15 14 13 17 17 C 1.52998 * 109.47189 * 59.99484 * 15 14 13 18 18 C 1.52994 * 109.47232 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.47265 * 179.97438 * 18 15 14 20 20 H 1.07997 * 119.99810 * 0.02562 * 19 18 15 21 21 C 1.37883 * 119.99850 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99912 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00051 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.46942 * 90.00203 * 23 21 19 25 25 H 1.48499 * 109.46951 * 210.00389 * 23 21 19 26 26 H 1.48499 * 109.47427 * 330.00313 * 23 21 19 27 27 C 1.38856 * 119.85907 * 359.74921 * 9 8 7 28 28 C 1.38121 * 119.93108 * 0.02562 * 27 9 8 29 29 H 1.08996 * 109.46961 * 60.00114 * 1 2 3 30 30 H 1.08994 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46881 * 300.00171 * 1 2 3 32 32 H 0.96993 * 120.00115 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46911 * 59.99780 * 5 3 2 34 34 H 1.08996 * 109.46899 * 299.99855 * 5 3 2 35 35 H 1.08001 * 119.96225 * 359.97438 * 7 6 5 36 36 H 1.08003 * 120.03330 * 180.25474 * 8 7 6 37 37 H 0.97003 * 120.00255 * 33.30065 * 10 9 8 38 38 H 0.96996 * 120.00758 * 0.02562 * 13 11 10 39 39 H 1.08999 * 109.46458 * 299.99870 * 14 13 11 40 40 H 1.09000 * 109.47160 * 59.99871 * 14 13 11 41 41 H 1.09006 * 109.47647 * 60.00105 * 16 15 14 42 42 H 1.09004 * 109.47290 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47194 * 300.00157 * 16 15 14 44 44 H 1.09000 * 109.46860 * 60.00421 * 17 15 14 45 45 H 1.09004 * 109.47141 * 180.02562 * 17 15 14 46 46 H 1.08996 * 109.47455 * 300.00093 * 17 15 14 47 47 H 1.09000 * 109.47427 * 299.99953 * 18 15 14 48 48 H 1.09005 * 109.47177 * 59.99807 * 18 15 14 49 49 H 0.96997 * 120.00403 * 179.97438 * 22 21 19 50 50 H 1.08002 * 120.03671 * 179.97438 * 27 9 8 51 51 H 1.08004 * 119.96340 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6460 1.1672 -0.0006 6 6 4.1483 2.5880 -0.0011 7 6 4.3832 3.2363 -1.1998 8 6 4.8390 4.5400 -1.2037 9 6 5.0714 5.1964 -0.0021 10 7 5.5388 6.5154 -0.0027 11 6 6.3677 6.9371 0.9728 12 8 6.7865 6.1482 1.7978 13 7 6.7324 8.2331 1.0337 14 6 7.6340 8.6913 2.0938 15 6 7.8866 10.1919 1.9351 16 6 8.5255 10.4602 0.5711 17 6 6.5589 10.9458 2.0335 18 6 8.8275 10.6706 3.0425 19 6 9.0768 12.1485 2.8859 20 1 8.6104 12.6921 2.0776 21 6 9.9004 12.8067 3.7745 22 7 10.1176 14.0966 3.6382 23 14 10.7065 11.8665 5.1730 24 1 12.0222 11.3442 4.7245 25 1 10.9031 12.7747 6.3313 26 1 9.8350 10.7333 5.5748 27 6 4.8395 4.5409 1.1998 28 6 4.3792 3.2386 1.1970 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9500 -0.8400 0.0004 33 1 4.0089 0.6535 -0.8908 34 1 4.0096 0.6532 0.8891 35 1 4.2069 2.7236 -2.1339 36 1 5.0184 5.0472 -2.1402 37 1 5.2661 7.1264 -0.7051 38 1 6.3981 8.8625 0.3758 39 1 7.1789 8.4998 3.0655 40 1 8.5800 8.1545 2.0234 41 1 7.8548 10.1193 -0.2177 42 1 8.7050 11.5293 0.4579 43 1 9.4714 9.9231 0.5010 44 1 6.1037 10.7548 3.0053 45 1 6.7388 12.0149 1.9200 46 1 5.8882 10.6049 1.2448 47 1 8.3720 10.4796 4.0142 48 1 9.7735 10.1335 2.9729 49 1 10.6966 14.5597 4.2635 50 1 5.0196 5.0485 2.1360 51 1 4.1990 2.7281 2.1316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588233072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:36 Heat of formation + Delta-G solvation = -51.075724 kcal Electronic energy + Delta-G solvation = -29422.864826 eV Core-core repulsion = 25321.803236 eV Total energy + Delta-G solvation = -4101.061590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75164 -40.08509 -38.77458 -37.34013 -35.13197 -34.85046 -33.75921 -32.29580 -31.74492 -31.02290 -28.42730 -27.75954 -26.56997 -26.49631 -25.54263 -23.18521 -22.69546 -21.81607 -20.85539 -20.54350 -18.86486 -18.10035 -17.66333 -17.37541 -16.80639 -16.59365 -16.09165 -15.61236 -15.25562 -15.13246 -14.81964 -14.33869 -14.17300 -14.09190 -13.88985 -13.72870 -13.63486 -13.42736 -13.31534 -12.79258 -12.75628 -12.72806 -12.34082 -12.26498 -12.26269 -11.83433 -11.30444 -11.25787 -11.14328 -11.01377 -10.62662 -10.51008 -10.46175 -10.22147 -10.05092 -9.97772 -9.75105 -9.57846 -9.53619 -9.00297 -8.98093 -8.88321 -8.53653 -8.04447 -6.04416 -4.01793 1.16005 1.35888 2.28815 2.63926 2.80617 3.17595 3.31885 3.39958 3.44124 3.76967 4.21042 4.36423 4.45749 4.55843 4.60067 4.83869 4.88055 4.93888 5.05529 5.08586 5.27972 5.28226 5.33669 5.34442 5.50305 5.52311 5.57333 5.62269 5.88688 5.92735 6.08986 6.09854 6.11831 6.13588 6.26259 6.30795 6.43742 6.44499 6.50516 6.58577 6.67878 6.86427 6.93838 6.97006 7.00683 7.04061 7.04462 7.19547 7.36035 7.77519 7.84507 7.96296 8.51880 8.56942 8.99466 9.58252 11.08270 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.001607 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.560540 B =17424.874773 C =17732.374109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.525 6.525 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.085 4.085 8 C -0.151 4.151 9 C 0.177 3.823 10 N -0.691 5.691 11 C 0.699 3.301 12 O -0.576 6.576 13 N -0.731 5.731 14 C 0.143 3.857 15 C -0.063 4.063 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.001 4.001 19 C -0.512 4.512 20 H 0.078 0.922 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 C -0.119 4.119 28 C -0.083 4.083 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.401 0.599 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.406 0.594 38 H 0.397 0.603 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.030 0.970 47 H 0.019 0.981 48 H 0.014 0.986 49 H 0.262 0.738 50 H 0.137 0.863 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 -28.966 -11.748 35.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.400 6.400 5 C -0.136 4.136 6 C -0.096 4.096 7 C -0.103 4.103 8 C -0.172 4.172 9 C 0.082 3.918 10 N -0.338 5.338 11 C 0.400 3.600 12 O -0.453 6.453 13 N -0.386 5.386 14 C 0.020 3.980 15 C -0.064 4.064 16 C -0.185 4.185 17 C -0.185 4.185 18 C -0.039 4.039 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.134 4.134 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 C -0.139 4.139 28 C -0.102 4.102 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.241 0.759 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.049 0.951 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.155 0.845 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.360 -28.647 -10.851 34.728 hybrid contribution 0.446 -0.189 0.125 0.500 sum -15.914 -28.835 -10.726 34.638 Atomic orbital electron populations 1.21522 0.79683 1.02110 1.02402 1.45852 1.07790 1.08783 1.77008 1.20767 0.90170 0.83583 0.75865 1.90755 1.70288 1.31177 1.47758 1.20599 0.91644 0.96221 1.05147 1.19116 1.02173 0.94702 0.93644 1.20637 0.98538 0.93988 0.97161 1.20768 1.04891 0.95121 0.96373 1.17505 0.96399 0.83912 0.94012 1.42697 1.50046 1.11423 1.29675 1.15983 0.79119 0.83205 0.81714 1.90932 1.58956 1.53684 1.41749 1.45361 1.52079 1.07063 1.34052 1.21566 0.92204 0.95362 0.88858 1.20711 0.97027 0.90682 0.97978 1.21773 0.99021 1.03278 0.94474 1.21770 0.95015 1.02012 0.99751 1.19586 0.93710 0.97560 0.93070 1.21075 1.28551 0.91401 1.13914 0.90400 1.24994 0.96206 0.94691 0.97503 1.69896 1.38241 1.08437 1.37691 0.86858 0.80253 0.80229 0.82435 1.20383 1.21508 1.18961 1.21159 0.99453 0.95348 0.97954 1.20805 0.97866 0.94324 0.97219 0.92269 0.90735 0.92244 0.76519 0.88031 0.87971 0.86114 0.85785 0.75926 0.76781 0.91773 0.91801 0.95095 0.90859 0.93366 0.93346 0.90863 0.95069 0.96306 0.96767 0.92793 0.84495 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.85 0.64 1.05 16 2 N -0.74 -3.68 5.71 -67.08 -0.38 -4.06 16 3 C 0.51 4.23 7.82 -10.98 -0.09 4.15 16 4 O -0.52 -6.91 16.03 5.55 0.09 -6.82 16 5 C -0.10 -0.59 5.83 -29.03 -0.17 -0.76 16 6 C -0.09 -0.93 4.38 -104.59 -0.46 -1.39 16 7 C -0.08 -0.81 9.69 -39.61 -0.38 -1.20 16 8 C -0.15 -1.56 9.96 -39.39 -0.39 -1.96 16 9 C 0.18 2.22 6.28 -83.69 -0.53 1.69 16 10 N -0.69 -8.11 5.35 -14.23 -0.08 -8.19 16 11 C 0.70 10.44 8.30 -86.92 -0.72 9.72 16 12 O -0.58 -10.73 14.03 5.29 0.07 -10.65 16 13 N -0.73 -10.12 4.96 -65.22 -0.32 -10.44 16 14 C 0.14 2.39 4.56 -4.04 -0.02 2.37 16 15 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 16 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 17 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 18 C 0.00 -0.03 3.11 -27.89 -0.09 -0.12 16 19 C -0.51 -13.62 8.21 -34.44 -0.28 -13.90 16 20 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 21 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 22 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 23 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 27 C -0.12 -1.61 8.65 -39.40 -0.34 -1.95 16 28 C -0.08 -0.95 9.69 -39.61 -0.38 -1.34 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 33 H 0.10 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.41 3.41 8.83 -40.82 -0.36 3.05 16 38 H 0.40 4.55 6.18 -40.82 -0.25 4.30 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 46 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 47 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 48 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.14 2.09 6.41 -52.49 -0.34 1.75 16 51 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 411.11 15.07 6.20 6.20 Total: -1.00 -36.10 411.11 -9.13 -45.23 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.02 Total: 5.13 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.79 Total: -6.84 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.01 Total: -49.06 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.16 Total: -17.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.10 -9.13 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588233072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.847 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds