Wall clock time and date at job start Wed Apr 1 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00200 * 2 1 4 4 O 1.21286 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00231 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.46930 * 179.97438 * 5 3 2 7 7 C 1.38287 * 119.92741 * 269.72387 * 6 5 3 8 8 C 1.38110 * 120.06711 * 179.77154 * 7 6 5 9 9 C 1.38871 * 119.93136 * 0.50233 * 8 7 6 10 10 N 1.39940 * 120.06848 * 179.72393 * 9 8 7 11 11 C 1.34778 * 120.00067 * 213.29154 * 10 9 8 12 12 O 1.21587 * 119.99617 * 5.32174 * 11 10 9 13 13 N 1.34772 * 119.99963 * 185.31992 * 11 10 9 14 14 C 1.46510 * 119.99835 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47113 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47145 * 299.99758 * 15 14 13 17 17 C 1.52998 * 109.47189 * 59.99484 * 15 14 13 18 18 C 1.52994 * 109.47232 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.47265 * 179.97438 * 18 15 14 20 20 H 1.07997 * 119.99810 * 0.02562 * 19 18 15 21 21 C 1.37883 * 119.99850 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99912 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00051 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.46942 * 90.00203 * 23 21 19 25 25 H 1.48499 * 109.46951 * 210.00389 * 23 21 19 26 26 H 1.48499 * 109.47427 * 330.00313 * 23 21 19 27 27 C 1.38856 * 119.85907 * 359.74921 * 9 8 7 28 28 C 1.38121 * 119.93108 * 0.02562 * 27 9 8 29 29 H 1.08996 * 109.46961 * 60.00114 * 1 2 3 30 30 H 1.08994 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46881 * 300.00171 * 1 2 3 32 32 H 0.96993 * 120.00115 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46911 * 59.99780 * 5 3 2 34 34 H 1.08996 * 109.46899 * 299.99855 * 5 3 2 35 35 H 1.08001 * 119.96225 * 359.97438 * 7 6 5 36 36 H 1.08003 * 120.03330 * 180.25474 * 8 7 6 37 37 H 0.97003 * 120.00255 * 33.30065 * 10 9 8 38 38 H 0.96996 * 120.00758 * 0.02562 * 13 11 10 39 39 H 1.08999 * 109.46458 * 299.99870 * 14 13 11 40 40 H 1.09000 * 109.47160 * 59.99871 * 14 13 11 41 41 H 1.09006 * 109.47647 * 60.00105 * 16 15 14 42 42 H 1.09004 * 109.47290 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47194 * 300.00157 * 16 15 14 44 44 H 1.09000 * 109.46860 * 60.00421 * 17 15 14 45 45 H 1.09004 * 109.47141 * 180.02562 * 17 15 14 46 46 H 1.08996 * 109.47455 * 300.00093 * 17 15 14 47 47 H 1.09000 * 109.47427 * 299.99953 * 18 15 14 48 48 H 1.09005 * 109.47177 * 59.99807 * 18 15 14 49 49 H 0.96997 * 120.00403 * 179.97438 * 22 21 19 50 50 H 1.08002 * 120.03671 * 179.97438 * 27 9 8 51 51 H 1.08004 * 119.96340 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6460 1.1672 -0.0006 6 6 4.1483 2.5880 -0.0011 7 6 4.3832 3.2363 -1.1998 8 6 4.8390 4.5400 -1.2037 9 6 5.0714 5.1964 -0.0021 10 7 5.5388 6.5154 -0.0027 11 6 6.3677 6.9371 0.9728 12 8 6.7865 6.1482 1.7978 13 7 6.7324 8.2331 1.0337 14 6 7.6340 8.6913 2.0938 15 6 7.8866 10.1919 1.9351 16 6 8.5255 10.4602 0.5711 17 6 6.5589 10.9458 2.0335 18 6 8.8275 10.6706 3.0425 19 6 9.0768 12.1485 2.8859 20 1 8.6104 12.6921 2.0776 21 6 9.9004 12.8067 3.7745 22 7 10.1176 14.0966 3.6382 23 14 10.7065 11.8665 5.1730 24 1 12.0222 11.3442 4.7245 25 1 10.9031 12.7747 6.3313 26 1 9.8350 10.7333 5.5748 27 6 4.8395 4.5409 1.1998 28 6 4.3792 3.2386 1.1970 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9500 -0.8400 0.0004 33 1 4.0089 0.6535 -0.8908 34 1 4.0096 0.6532 0.8891 35 1 4.2069 2.7236 -2.1339 36 1 5.0184 5.0472 -2.1402 37 1 5.2661 7.1264 -0.7051 38 1 6.3981 8.8625 0.3758 39 1 7.1789 8.4998 3.0655 40 1 8.5800 8.1545 2.0234 41 1 7.8548 10.1193 -0.2177 42 1 8.7050 11.5293 0.4579 43 1 9.4714 9.9231 0.5010 44 1 6.1037 10.7548 3.0053 45 1 6.7388 12.0149 1.9200 46 1 5.8882 10.6049 1.2448 47 1 8.3720 10.4796 4.0142 48 1 9.7735 10.1335 2.9729 49 1 10.6966 14.5597 4.2635 50 1 5.0196 5.0485 2.1360 51 1 4.1990 2.7281 2.1316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588233072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:35 Heat of formation + Delta-G solvation = -77.068295 kcal Electronic energy + Delta-G solvation = -29423.991948 eV Core-core repulsion = 25321.803236 eV Total energy + Delta-G solvation = -4102.188712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76228 -40.82218 -39.72095 -38.69982 -36.03696 -35.50316 -35.27055 -34.06208 -32.63777 -31.83896 -29.79927 -28.97334 -27.98981 -27.56313 -26.36066 -24.50206 -23.91791 -22.81603 -21.81643 -21.28568 -20.14119 -19.28560 -18.90715 -18.47956 -18.15341 -17.25829 -16.92284 -16.53108 -16.47798 -16.06561 -15.88662 -15.74420 -15.51694 -15.20217 -15.05502 -14.76203 -14.61818 -14.34538 -14.21600 -14.16554 -14.06547 -13.89798 -13.51985 -13.08858 -12.94038 -12.84852 -12.81928 -12.63208 -12.55367 -12.30321 -12.16862 -12.07494 -11.77471 -11.52613 -11.47414 -11.28019 -11.13021 -10.91806 -10.86512 -10.70288 -10.12240 -10.07976 -9.80882 -8.91996 -8.22283 -6.22336 0.33086 0.53106 1.35925 1.38881 1.48838 1.57324 1.70680 2.01552 2.38568 2.39216 2.97079 3.13299 3.19269 3.77315 3.89905 3.94257 4.05709 4.10586 4.15077 4.15696 4.36166 4.49948 4.52175 4.59933 4.62550 4.63795 4.71112 4.73193 4.79034 4.79918 4.94850 4.97818 5.00887 5.09497 5.11563 5.29331 5.31841 5.34791 5.37442 5.40940 5.45668 5.49749 5.55581 5.60223 5.68356 5.69217 5.76193 5.96812 6.13269 6.38138 6.63074 6.84389 6.96242 7.35198 7.40446 7.45356 8.93231 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.001607 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.560540 B =17424.874773 C =17732.374109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.726 5.726 3 C 0.507 3.493 4 O -0.583 6.583 5 C -0.092 4.092 6 C -0.095 4.095 7 C -0.089 4.089 8 C -0.148 4.148 9 C 0.152 3.848 10 N -0.675 5.675 11 C 0.699 3.301 12 O -0.616 6.616 13 N -0.719 5.719 14 C 0.158 3.842 15 C -0.058 4.058 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.003 4.003 19 C -0.502 4.502 20 H 0.053 0.947 21 C 0.007 3.993 22 N -0.950 5.950 23 Si 0.933 3.067 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.252 1.252 27 C -0.146 4.146 28 C -0.098 4.098 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.042 0.958 32 H 0.421 0.579 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.422 0.578 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.014 0.986 48 H 0.014 0.986 49 H 0.262 0.738 50 H 0.109 0.891 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 -32.593 -13.518 39.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.379 5.379 3 C 0.294 3.706 4 O -0.463 6.463 5 C -0.131 4.131 6 C -0.096 4.096 7 C -0.107 4.107 8 C -0.168 4.168 9 C 0.057 3.943 10 N -0.324 5.324 11 C 0.399 3.601 12 O -0.496 6.496 13 N -0.375 5.375 14 C 0.033 3.967 15 C -0.059 4.059 16 C -0.180 4.180 17 C -0.181 4.181 18 C -0.041 4.041 19 C -0.540 4.540 20 H 0.071 0.929 21 C -0.190 4.190 22 N -0.592 5.592 23 Si 0.758 3.242 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.176 1.176 27 C -0.167 4.167 28 C -0.116 4.116 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.258 0.742 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.261 0.739 38 H 0.249 0.751 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.033 0.967 48 H 0.032 0.968 49 H 0.071 0.929 50 H 0.127 0.873 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.252 -32.332 -12.670 38.775 hybrid contribution 0.602 0.841 0.593 1.192 sum -16.650 -31.491 -12.078 37.614 Atomic orbital electron populations 1.21611 0.79468 1.03990 1.01026 1.45763 1.08060 1.08863 1.75172 1.21138 0.91006 0.83492 0.74960 1.90739 1.71470 1.33271 1.50782 1.20685 0.90036 0.94405 1.07966 1.19525 1.00651 0.96438 0.92993 1.21094 0.97410 0.93860 0.98357 1.21088 1.03782 0.95517 0.96430 1.17710 0.97758 0.84264 0.94556 1.42443 1.49011 1.11716 1.29191 1.16076 0.79233 0.82930 0.81829 1.90911 1.60499 1.54746 1.43447 1.45041 1.51619 1.07143 1.33706 1.21181 0.92351 0.93846 0.89290 1.20567 0.96555 0.91742 0.96989 1.21698 0.99855 1.01518 0.94953 1.21699 0.95185 1.00213 1.00969 1.19557 0.94875 0.94943 0.94707 1.21368 1.26942 0.93338 1.12397 0.92909 1.25814 0.97376 0.95443 1.00324 1.70035 1.39849 1.10171 1.39162 0.85909 0.79613 0.79217 0.79413 1.19692 1.21497 1.17615 1.21112 1.01494 0.96585 0.97459 1.21003 0.98131 0.93870 0.98642 0.93475 0.87198 0.93884 0.74237 0.84591 0.85666 0.83159 0.83234 0.73923 0.75119 0.92815 0.92586 0.91272 0.93558 0.93595 0.93789 0.93518 0.91357 0.96726 0.96764 0.92877 0.87333 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.70 127.77 1.37 2.00 16 2 N -0.73 -5.31 5.71 -484.52 -2.77 -8.07 16 3 C 0.51 7.38 7.82 87.66 0.69 8.07 16 4 O -0.58 -15.03 16.03 -3.05 -0.05 -15.08 16 5 C -0.09 -0.84 5.83 29.10 0.17 -0.67 16 6 C -0.09 -1.67 4.38 -19.84 -0.09 -1.76 16 7 C -0.09 -1.47 9.69 22.25 0.22 -1.25 16 8 C -0.15 -2.73 9.96 22.39 0.22 -2.51 16 9 C 0.15 3.69 6.28 38.15 0.24 3.93 16 10 N -0.67 -14.99 5.35 -317.19 -1.70 -16.69 16 11 C 0.70 20.32 8.30 179.06 1.49 21.81 16 12 O -0.62 -23.21 14.03 -3.99 -0.06 -23.26 16 13 N -0.72 -18.70 4.96 -478.52 -2.37 -21.08 16 14 C 0.16 5.09 4.56 86.38 0.39 5.49 16 15 C -0.06 -2.05 0.54 -52.19 -0.03 -2.08 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 17 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 18 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 19 C -0.50 -27.30 8.21 25.60 0.21 -27.09 16 20 H 0.05 3.08 5.92 -2.91 -0.02 3.07 16 21 C 0.01 0.39 5.47 84.66 0.46 0.85 16 22 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 23 Si 0.93 44.65 27.47 68.60 1.88 46.54 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 27 C -0.15 -4.05 8.65 22.39 0.19 -3.85 16 28 C -0.10 -2.21 9.69 22.25 0.22 -2.00 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.42 -0.20 8.83 -92.71 -0.82 -1.02 16 33 H 0.14 0.34 8.08 -2.39 -0.02 0.32 16 34 H 0.13 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.42 6.14 8.83 -92.71 -0.82 5.32 16 38 H 0.41 8.24 6.18 -92.71 -0.57 7.66 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 1.72 6.86 -2.38 -0.02 1.70 16 42 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 46 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 47 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 48 H 0.01 0.64 7.57 -2.38 -0.02 0.62 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 50 H 0.11 3.55 6.41 -2.91 -0.02 3.54 16 51 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -83.03 411.11 0.94 -82.09 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -1.30 Total: 20.10 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 7.00 Total: -6.12 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -6.54 Total: -104.26 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.10 Total: -38.34 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -83.03 0.94 -82.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588233072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.017 kcal (2) G-P(sol) polarization free energy of solvation -83.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds