Wall clock time and date at job start Wed Apr 1 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47049 * 2 1 4 4 C 1.52997 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47613 * 305.00422 * 4 3 2 6 6 N 1.46500 * 109.47084 * 65.00364 * 4 3 2 7 7 C 1.34776 * 120.00174 * 275.00117 * 6 4 3 8 8 O 1.21356 * 119.99636 * 359.97438 * 7 6 4 9 9 C 1.49445 * 120.00084 * 179.97438 * 7 6 4 10 10 O 1.21350 * 120.00221 * 0.02562 * 9 7 6 11 11 N 1.34776 * 120.00084 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00519 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47520 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46976 * 299.99976 * 13 12 11 15 15 C 1.52998 * 109.47114 * 59.99745 * 13 12 11 16 16 C 1.50699 * 109.47022 * 180.02562 * 13 12 11 17 17 H 1.08001 * 119.99937 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99825 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99764 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99703 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47119 * 90.00293 * 20 18 16 22 22 H 1.48499 * 109.46677 * 209.99882 * 20 18 16 23 23 H 1.48498 * 109.47516 * 329.99823 * 20 18 16 24 24 C 1.50703 * 109.47483 * 185.00374 * 4 3 2 25 25 C 1.38225 * 119.61869 * 124.99916 * 24 4 3 26 26 C 1.38635 * 119.15939 * 179.97438 * 25 24 4 27 27 C 1.38675 * 118.41956 * 0.02562 * 26 25 24 28 28 C 1.38186 * 119.16332 * 0.27967 * 27 26 25 29 29 N 1.31860 * 119.61591 * 304.98272 * 24 4 3 30 30 H 1.08998 * 109.46808 * 59.99758 * 1 2 3 31 31 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46933 * 299.99909 * 1 2 3 33 33 H 1.08998 * 109.47173 * 240.00541 * 2 1 3 34 34 H 1.08998 * 109.46808 * 120.00242 * 2 1 3 35 35 H 1.09002 * 109.47179 * 60.00242 * 3 2 1 36 36 H 1.08997 * 109.47514 * 300.00363 * 3 2 1 37 37 H 0.97004 * 119.99960 * 94.99612 * 6 4 3 38 38 H 0.97004 * 119.99866 * 359.97438 * 11 9 7 39 39 H 1.08999 * 109.46741 * 300.00132 * 12 11 9 40 40 H 1.09005 * 109.46947 * 59.99896 * 12 11 9 41 41 H 1.08996 * 109.47110 * 59.99875 * 14 13 12 42 42 H 1.08998 * 109.47149 * 180.02562 * 14 13 12 43 43 H 1.09005 * 109.47119 * 299.99997 * 14 13 12 44 44 H 1.08999 * 109.47098 * 60.00018 * 15 13 12 45 45 H 1.08998 * 109.46719 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47219 * 300.00276 * 15 13 12 47 47 H 0.96996 * 119.99617 * 179.97438 * 19 18 16 48 48 H 1.07997 * 120.42054 * 0.02562 * 25 24 4 49 49 H 1.07998 * 120.78847 * 180.02562 * 26 25 24 50 50 H 1.08002 * 120.41399 * 179.97438 * 27 26 25 51 51 H 1.07999 * 119.61418 * 179.70216 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8531 0.8426 6 7 4.0588 0.8587 -1.2509 7 6 4.1876 -0.4780 -1.3659 8 8 3.8990 -1.1979 -0.4325 9 6 4.6858 -1.0736 -2.6428 10 8 4.9748 -0.3537 -3.5760 11 7 4.8150 -2.4102 -2.7577 12 6 5.3039 -2.9941 -4.0092 13 6 5.3553 -4.5174 -3.8756 14 6 6.2989 -4.8975 -2.7327 15 6 3.9526 -5.0508 -3.5776 16 6 5.8588 -5.1179 -5.1628 17 1 6.1159 -4.4771 -5.9933 18 6 5.9911 -6.4853 -5.2802 19 7 5.6784 -7.2654 -4.2687 20 14 6.6158 -7.2295 -6.8755 21 1 8.0959 -7.3404 -6.8239 22 1 6.0244 -8.5796 -7.0568 23 1 6.2240 -6.3605 -8.0141 24 6 4.0723 2.8579 0.1246 25 6 4.9494 3.1849 1.1416 26 6 5.4060 4.4897 1.2464 27 6 4.9607 5.4211 0.3204 28 6 4.0786 5.0219 -0.6654 29 7 3.6703 3.7700 -0.7387 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 4.2898 1.4341 -1.9969 38 1 4.5851 -2.9856 -2.0114 39 1 4.6314 -2.7237 -4.8233 40 1 6.3031 -2.6137 -4.2217 41 1 5.9352 -4.4631 -1.8015 42 1 6.3359 -5.9827 -2.6377 43 1 7.2982 -4.5174 -2.9450 44 1 3.2804 -4.7800 -4.3918 45 1 3.9892 -6.1360 -3.4828 46 1 3.5889 -4.6164 -2.6464 47 1 5.7711 -8.2274 -4.3514 48 1 5.2756 2.4333 1.8452 49 1 6.0920 4.7741 2.0305 50 1 5.2954 6.4466 0.3722 51 1 3.7234 5.7423 -1.3874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591554072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:53 Heat of formation + Delta-G solvation = -50.451406 kcal Electronic energy + Delta-G solvation = -30710.406197 eV Core-core repulsion = 26609.371680 eV Total energy + Delta-G solvation = -4101.034517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.01538 -40.18804 -38.51592 -36.47786 -36.28414 -33.81054 -33.25955 -32.81628 -31.92280 -30.87374 -28.83810 -26.33036 -25.71005 -25.34497 -24.95809 -23.97837 -23.32600 -21.84921 -20.82186 -20.14324 -19.00270 -18.36329 -17.12335 -17.08727 -16.41120 -16.03729 -15.87618 -15.76111 -15.37794 -14.84034 -14.80439 -14.53757 -14.21660 -14.04795 -13.68213 -13.61412 -13.39067 -13.29693 -12.92183 -12.80077 -12.53018 -12.23060 -12.19663 -11.81874 -11.66630 -11.38715 -11.34376 -11.16267 -10.92857 -10.87141 -10.69659 -10.62414 -10.38773 -10.28971 -10.19063 -9.90308 -9.63964 -9.59559 -9.45032 -9.21716 -9.14648 -8.78997 -8.57604 -8.35990 -6.01793 -4.12396 0.61710 0.86654 1.68847 2.60257 3.28680 3.35809 3.38779 3.40752 3.50280 3.77363 3.99980 4.20521 4.40096 4.45648 4.64760 4.68361 4.80848 4.87562 4.91366 4.97909 5.18604 5.22591 5.24853 5.30924 5.49622 5.53517 5.69307 5.74682 5.80248 5.85371 6.06479 6.13017 6.13410 6.25381 6.25714 6.27733 6.40193 6.48638 6.65664 6.84659 6.86418 6.95602 7.01712 7.15498 7.34795 7.56323 7.56880 7.68650 7.74626 8.00172 8.01341 8.14210 8.34638 8.43736 8.87818 9.53385 10.99609 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.002204 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.836588 B =12703.600976 C =13518.072081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.199 3.801 5 H 0.105 0.895 6 N -0.694 5.694 7 C 0.510 3.490 8 O -0.515 6.515 9 C 0.495 3.505 10 O -0.534 6.534 11 N -0.680 5.680 12 C 0.128 3.872 13 C 0.056 3.944 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.116 3.884 25 C -0.154 4.154 26 C -0.074 4.074 27 C -0.170 4.170 28 C 0.102 3.898 29 N -0.469 5.469 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.008 0.992 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.087 0.913 46 H 0.009 0.991 47 H 0.260 0.740 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 22.538 13.369 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.160 4.160 4 C 0.094 3.906 5 H 0.123 0.877 6 N -0.348 5.348 7 C 0.291 3.709 8 O -0.390 6.390 9 C 0.274 3.726 10 O -0.412 6.412 11 N -0.332 5.332 12 C 0.006 3.994 13 C 0.055 3.945 14 C -0.191 4.191 15 C -0.191 4.191 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.022 4.022 25 C -0.175 4.175 26 C -0.100 4.100 27 C -0.190 4.190 28 C -0.056 4.056 29 N -0.178 5.178 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.248 0.752 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.156 0.844 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.232 22.038 12.744 25.989 hybrid contribution 1.008 -0.006 -0.158 1.020 sum -4.224 22.032 12.586 25.723 Atomic orbital electron populations 1.21776 0.96175 1.01634 1.01245 1.21617 0.95251 0.95612 1.03392 1.21989 0.92750 0.98170 1.03103 1.19933 0.94985 0.87575 0.88143 0.87686 1.45753 1.65770 1.06633 1.16655 1.20435 0.78614 0.82941 0.88927 1.90759 1.48123 1.60272 1.39891 1.19962 0.80661 0.84195 0.87760 1.90732 1.50073 1.60483 1.39954 1.46207 1.62691 1.05397 1.18882 1.21936 0.98185 0.96415 0.82831 1.18378 0.93475 0.86796 0.95819 1.21857 0.97735 1.04404 0.95122 1.21849 0.96532 1.04475 0.96234 1.20951 1.43915 0.91712 0.97941 0.92373 1.24885 0.95083 0.97097 0.96458 1.69808 1.48182 1.04136 1.30138 0.86558 0.78939 0.78473 0.83811 1.20723 1.21267 1.19909 1.21210 0.94035 0.95101 0.91889 1.22021 0.98000 0.97681 0.99769 1.21621 0.97588 0.92830 0.98009 1.22218 0.99257 1.01068 0.96470 1.22808 0.93686 0.92512 0.96574 1.67452 1.23249 1.01873 1.25218 0.93026 0.92654 0.93148 0.91614 0.91264 0.91242 0.90485 0.74809 0.75195 0.92027 0.92068 0.97254 0.89441 0.95388 0.95356 0.89466 0.97232 0.92956 0.84419 0.84552 0.84620 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.40 4.54 -26.73 -0.12 -1.52 16 3 C -0.12 -1.24 4.70 -26.73 -0.13 -1.36 16 4 C 0.20 2.09 2.57 -69.08 -0.18 1.91 16 5 H 0.11 1.09 7.31 -51.93 -0.38 0.71 16 6 N -0.69 -8.77 5.01 -55.36 -0.28 -9.05 16 7 C 0.51 7.73 6.46 -11.59 -0.07 7.65 16 8 O -0.52 -8.27 13.62 5.49 0.07 -8.20 16 9 C 0.49 8.80 7.89 -11.59 -0.09 8.71 16 10 O -0.53 -10.54 16.48 5.50 0.09 -10.45 16 11 N -0.68 -12.66 4.95 -60.73 -0.30 -12.96 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 13 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 15 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 16 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.88 -23.61 9.35 55.43 0.52 -23.09 16 20 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.12 1.11 5.62 -82.58 -0.46 0.65 16 25 C -0.15 -1.20 9.71 -39.44 -0.38 -1.59 16 26 C -0.07 -0.47 10.18 -39.27 -0.40 -0.87 16 27 C -0.17 -1.03 10.11 -39.44 -0.40 -1.43 16 28 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 29 N -0.47 -4.65 9.95 -9.47 -0.09 -4.75 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.91 5.65 -51.93 -0.29 0.62 16 34 H 0.07 0.83 7.85 -51.93 -0.41 0.43 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.42 5.36 8.05 -40.82 -0.33 5.03 16 38 H 0.41 7.47 5.64 -40.82 -0.23 7.24 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 42 H 0.09 2.20 6.07 -51.93 -0.31 1.89 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 46 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 47 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 48 H 0.14 0.85 7.95 -52.49 -0.42 0.44 16 49 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 50 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 51 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -28.99 409.15 -8.78 -37.77 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -8.01 Total: 10.75 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.93 Total: -1.84 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.15 Total: -49.85 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.99 -8.78 -37.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591554072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.681 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds