Wall clock time and date at job start Wed Apr 1 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47049 * 2 1 4 4 C 1.52997 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47613 * 305.00422 * 4 3 2 6 6 N 1.46500 * 109.47084 * 65.00364 * 4 3 2 7 7 C 1.34776 * 120.00174 * 275.00117 * 6 4 3 8 8 O 1.21356 * 119.99636 * 359.97438 * 7 6 4 9 9 C 1.49445 * 120.00084 * 179.97438 * 7 6 4 10 10 O 1.21350 * 120.00221 * 0.02562 * 9 7 6 11 11 N 1.34776 * 120.00084 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00519 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47520 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46976 * 299.99976 * 13 12 11 15 15 C 1.52998 * 109.47114 * 59.99745 * 13 12 11 16 16 C 1.50699 * 109.47022 * 180.02562 * 13 12 11 17 17 H 1.08001 * 119.99937 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99825 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99764 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99703 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47119 * 90.00293 * 20 18 16 22 22 H 1.48499 * 109.46677 * 209.99882 * 20 18 16 23 23 H 1.48498 * 109.47516 * 329.99823 * 20 18 16 24 24 C 1.50703 * 109.47483 * 185.00374 * 4 3 2 25 25 C 1.38225 * 119.61869 * 124.99916 * 24 4 3 26 26 C 1.38635 * 119.15939 * 179.97438 * 25 24 4 27 27 C 1.38675 * 118.41956 * 0.02562 * 26 25 24 28 28 C 1.38186 * 119.16332 * 0.27967 * 27 26 25 29 29 N 1.31860 * 119.61591 * 304.98272 * 24 4 3 30 30 H 1.08998 * 109.46808 * 59.99758 * 1 2 3 31 31 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46933 * 299.99909 * 1 2 3 33 33 H 1.08998 * 109.47173 * 240.00541 * 2 1 3 34 34 H 1.08998 * 109.46808 * 120.00242 * 2 1 3 35 35 H 1.09002 * 109.47179 * 60.00242 * 3 2 1 36 36 H 1.08997 * 109.47514 * 300.00363 * 3 2 1 37 37 H 0.97004 * 119.99960 * 94.99612 * 6 4 3 38 38 H 0.97004 * 119.99866 * 359.97438 * 11 9 7 39 39 H 1.08999 * 109.46741 * 300.00132 * 12 11 9 40 40 H 1.09005 * 109.46947 * 59.99896 * 12 11 9 41 41 H 1.08996 * 109.47110 * 59.99875 * 14 13 12 42 42 H 1.08998 * 109.47149 * 180.02562 * 14 13 12 43 43 H 1.09005 * 109.47119 * 299.99997 * 14 13 12 44 44 H 1.08999 * 109.47098 * 60.00018 * 15 13 12 45 45 H 1.08998 * 109.46719 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47219 * 300.00276 * 15 13 12 47 47 H 0.96996 * 119.99617 * 179.97438 * 19 18 16 48 48 H 1.07997 * 120.42054 * 0.02562 * 25 24 4 49 49 H 1.07998 * 120.78847 * 180.02562 * 26 25 24 50 50 H 1.08002 * 120.41399 * 179.97438 * 27 26 25 51 51 H 1.07999 * 119.61418 * 179.70216 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8531 0.8426 6 7 4.0588 0.8587 -1.2509 7 6 4.1876 -0.4780 -1.3659 8 8 3.8990 -1.1979 -0.4325 9 6 4.6858 -1.0736 -2.6428 10 8 4.9748 -0.3537 -3.5760 11 7 4.8150 -2.4102 -2.7577 12 6 5.3039 -2.9941 -4.0092 13 6 5.3553 -4.5174 -3.8756 14 6 6.2989 -4.8975 -2.7327 15 6 3.9526 -5.0508 -3.5776 16 6 5.8588 -5.1179 -5.1628 17 1 6.1159 -4.4771 -5.9933 18 6 5.9911 -6.4853 -5.2802 19 7 5.6784 -7.2654 -4.2687 20 14 6.6158 -7.2295 -6.8755 21 1 8.0959 -7.3404 -6.8239 22 1 6.0244 -8.5796 -7.0568 23 1 6.2240 -6.3605 -8.0141 24 6 4.0723 2.8579 0.1246 25 6 4.9494 3.1849 1.1416 26 6 5.4060 4.4897 1.2464 27 6 4.9607 5.4211 0.3204 28 6 4.0786 5.0219 -0.6654 29 7 3.6703 3.7700 -0.7387 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 4.2898 1.4341 -1.9969 38 1 4.5851 -2.9856 -2.0114 39 1 4.6314 -2.7237 -4.8233 40 1 6.3031 -2.6137 -4.2217 41 1 5.9352 -4.4631 -1.8015 42 1 6.3359 -5.9827 -2.6377 43 1 7.2982 -4.5174 -2.9450 44 1 3.2804 -4.7800 -4.3918 45 1 3.9892 -6.1360 -3.4828 46 1 3.5889 -4.6164 -2.6464 47 1 5.7711 -8.2274 -4.3514 48 1 5.2756 2.4333 1.8452 49 1 6.0920 4.7741 2.0305 50 1 5.2954 6.4466 0.3722 51 1 3.7234 5.7423 -1.3874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591554072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:52 Heat of formation + Delta-G solvation = -67.890650 kcal Electronic energy + Delta-G solvation = -30711.162419 eV Core-core repulsion = 26609.371680 eV Total energy + Delta-G solvation = -4101.790740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99923 -41.12887 -39.84300 -38.19780 -37.29516 -35.17439 -34.55167 -33.38130 -32.76561 -32.63932 -29.64679 -27.90103 -27.58628 -27.21430 -25.92642 -24.68890 -24.40750 -22.64207 -21.79014 -21.39017 -20.71346 -19.75037 -18.15112 -17.90608 -17.67915 -17.37361 -17.01347 -16.72396 -16.56197 -16.38899 -16.03226 -15.85350 -15.26401 -15.03143 -14.77712 -14.72184 -14.53894 -14.36158 -14.16263 -14.04607 -13.89938 -13.45742 -13.21380 -13.13302 -12.84982 -12.80534 -12.70222 -12.59946 -12.57339 -12.37453 -12.27655 -12.11843 -11.76954 -11.53772 -11.50838 -11.30166 -10.84279 -10.76655 -10.66111 -10.53751 -10.40915 -10.19106 -10.11870 -9.99519 -8.01496 -6.17829 0.04570 0.34565 0.36782 1.38329 1.44189 1.47386 1.55476 2.15284 2.45205 2.65198 2.92359 3.11069 3.22293 3.46929 3.57725 3.96359 4.06167 4.09486 4.17682 4.24218 4.24856 4.34448 4.40249 4.46503 4.60020 4.67729 4.68709 4.71943 4.82187 4.92080 4.93300 4.99195 5.04040 5.06222 5.11573 5.17200 5.20350 5.21815 5.25690 5.27152 5.36873 5.48098 5.49177 5.64884 5.67624 5.76008 5.94514 6.11462 6.18930 6.37544 6.41495 6.72865 6.86217 6.96685 7.00360 7.49965 8.97780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.002204 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.836588 B =12703.600976 C =13518.072081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.199 3.801 5 H 0.107 0.893 6 N -0.681 5.681 7 C 0.517 3.483 8 O -0.525 6.525 9 C 0.495 3.505 10 O -0.555 6.555 11 N -0.679 5.679 12 C 0.143 3.857 13 C 0.051 3.949 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.526 4.526 17 H 0.050 0.950 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.095 3.905 25 C -0.161 4.161 26 C -0.076 4.076 27 C -0.162 4.162 28 C 0.086 3.914 29 N -0.496 5.496 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.414 0.586 38 H 0.414 0.586 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.260 0.740 48 H 0.150 0.850 49 H 0.164 0.836 50 H 0.165 0.835 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 24.630 14.608 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.151 4.151 4 C 0.095 3.905 5 H 0.125 0.875 6 N -0.333 5.333 7 C 0.298 3.702 8 O -0.401 6.401 9 C 0.276 3.724 10 O -0.434 6.434 11 N -0.331 5.331 12 C 0.020 3.980 13 C 0.050 3.950 14 C -0.181 4.181 15 C -0.181 4.181 16 C -0.564 4.564 17 H 0.068 0.932 18 C -0.174 4.174 19 N -0.539 5.539 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.043 4.043 25 C -0.181 4.181 26 C -0.102 4.102 27 C -0.182 4.182 28 C -0.071 4.071 29 N -0.205 5.205 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.168 0.832 49 H 0.182 0.818 50 H 0.183 0.817 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.079 24.155 14.002 28.378 hybrid contribution 0.960 -0.532 -0.516 1.213 sum -4.119 23.623 13.485 27.511 Atomic orbital electron populations 1.21755 0.95099 1.01671 1.02048 1.21564 0.96245 0.96104 1.01769 1.21896 0.92521 0.97213 1.03426 1.20063 0.95136 0.88558 0.86756 0.87480 1.45766 1.64515 1.05538 1.17519 1.19852 0.78983 0.83747 0.87629 1.90760 1.48962 1.60637 1.39737 1.20414 0.79778 0.83645 0.88559 1.90717 1.50788 1.60836 1.41031 1.46042 1.63009 1.05959 1.18104 1.21544 0.97656 0.95070 0.83698 1.18377 0.93564 0.88049 0.94995 1.21705 0.97550 1.02850 0.96032 1.21698 0.96352 1.02946 0.97110 1.21234 1.44242 0.92079 0.98884 0.93157 1.25495 0.95392 0.97516 0.98953 1.69922 1.48543 1.04154 1.31275 0.85712 0.78378 0.77647 0.80778 1.20486 1.21041 1.19857 1.21051 0.95605 0.94390 0.93212 1.22229 0.97496 0.98919 0.99459 1.22009 0.97512 0.92129 0.98571 1.22576 0.97870 1.02447 0.95270 1.23232 0.94184 0.92086 0.97629 1.67380 1.24283 1.02951 1.25931 0.93007 0.93029 0.91534 0.94199 0.91832 0.89611 0.91322 0.74914 0.74799 0.92933 0.92840 0.95064 0.91734 0.95818 0.95868 0.91750 0.95091 0.93035 0.83244 0.81811 0.81695 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.12 -2.70 4.54 30.59 0.14 -2.56 16 3 C -0.11 -2.19 4.70 30.59 0.14 -2.05 16 4 C 0.20 4.03 2.57 44.25 0.11 4.14 16 5 H 0.11 2.12 7.31 -2.39 -0.02 2.11 16 6 N -0.68 -16.97 5.01 -447.43 -2.24 -19.22 16 7 C 0.52 15.56 6.46 87.27 0.56 16.12 16 8 O -0.52 -16.60 13.62 -3.26 -0.04 -16.64 16 9 C 0.50 17.57 7.89 87.27 0.69 18.26 16 10 O -0.55 -21.93 16.48 -3.25 -0.05 -21.99 16 11 N -0.68 -25.14 4.95 -464.41 -2.30 -27.44 16 12 C 0.14 6.07 4.50 86.38 0.39 6.46 16 13 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 14 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 15 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 16 C -0.53 -27.61 8.01 25.60 0.21 -27.41 16 17 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 18 C 0.03 1.38 5.15 84.66 0.44 1.82 16 19 N -0.90 -48.46 9.35 21.45 0.20 -48.26 16 20 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.09 1.71 5.62 42.55 0.24 1.95 16 25 C -0.16 -2.19 9.71 22.36 0.22 -1.97 16 26 C -0.08 -0.74 10.18 22.47 0.23 -0.51 16 27 C -0.16 -1.49 10.11 22.36 0.23 -1.26 16 28 C 0.09 1.14 11.18 84.67 0.95 2.09 16 29 N -0.50 -9.30 9.95 -183.88 -1.83 -11.13 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.11 5.65 -2.39 -0.01 1.09 16 34 H 0.06 1.50 7.85 -2.39 -0.02 1.48 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.41 10.64 8.05 -92.71 -0.75 9.89 16 38 H 0.41 14.78 5.64 -92.71 -0.52 14.26 16 39 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 2.33 8.14 -2.38 -0.02 2.32 16 41 H 0.03 1.24 6.86 -2.39 -0.02 1.23 16 42 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 43 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.02 1.03 8.14 -2.39 -0.02 1.02 16 45 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 46 H 0.03 1.24 6.86 -2.39 -0.02 1.23 16 47 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 48 H 0.15 1.56 7.95 -2.91 -0.02 1.54 16 49 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 50 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 51 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -62.10 409.15 1.82 -60.28 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.32 Total: 34.71 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.39 Total: 5.11 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -6.17 Total: -106.04 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.10 Total: -38.63 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -62.10 1.82 -60.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591554072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.609 kcal (2) G-P(sol) polarization free energy of solvation -62.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds