Wall clock time and date at job start Wed Apr 1 2020 05:35:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.52996 * 109.47001 * 2 1
4 4 C 1.52995 * 109.46809 * 240.00084 * 2 1 3
5 5 N 1.46500 * 109.47161 * 119.99807 * 2 1 3
6 6 N 1.28458 * 124.88592 * 240.33960 * 5 2 1
7 7 C 1.31812 * 110.07664 * 180.16219 * 6 5 2
8 8 C 1.47706 * 126.52375 * 179.81852 * 7 6 5
9 9 O 1.21569 * 120.00141 * 179.68562 * 8 7 6
10 10 N 1.34783 * 119.99531 * 359.68870 * 8 7 6
11 11 C 1.47422 * 125.65155 * 359.96828 * 10 8 7
12 12 C 1.54907 * 104.83115 * 155.91433 * 11 10 8
13 13 C 1.55162 * 101.58039 * 37.01385 * 12 11 10
14 14 O 1.42905 * 110.71869 * 82.86050 * 13 12 11
15 15 C 1.50701 * 110.72075 * 205.95482 * 13 12 11
16 16 H 1.08000 * 119.99666 * 357.56011 * 15 13 12
17 17 C 1.37875 * 120.00020 * 177.56128 * 15 13 12
18 18 N 1.31514 * 120.00056 * 359.97438 * 17 15 13
19 19 Si 1.86799 * 120.00248 * 179.97438 * 17 15 13
20 20 H 1.48497 * 109.46961 * 89.99601 * 19 17 15
21 21 H 1.48503 * 109.47348 * 209.99975 * 19 17 15
22 22 H 1.48501 * 109.46737 * 330.00161 * 19 17 15
23 23 C 1.47488 * 125.59011 * 180.02562 * 10 8 7
24 24 C 1.41506 * 106.95870 * 359.55349 * 7 6 5
25 25 C 1.35036 * 124.88230 * 60.00003 * 5 2 1
26 26 C 1.50698 * 126.38734 * 359.97438 * 25 5 2
27 27 C 1.52992 * 117.50214 * 213.74816 * 26 25 5
28 28 C 1.53008 * 117.49872 * 145.08581 * 26 25 5
29 29 H 1.08999 * 109.46722 * 300.00137 * 1 2 3
30 30 H 1.09003 * 109.46737 * 60.00170 * 1 2 3
31 31 H 1.08995 * 109.46739 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47294 * 180.02562 * 3 2 1
33 33 H 1.09003 * 109.47042 * 300.00041 * 3 2 1
34 34 H 1.08996 * 109.47710 * 59.99858 * 3 2 1
35 35 H 1.09008 * 109.47010 * 299.99689 * 4 2 1
36 36 H 1.09003 * 109.47353 * 59.99886 * 4 2 1
37 37 H 1.09000 * 109.46971 * 180.02562 * 4 2 1
38 38 H 1.09000 * 110.36343 * 37.08413 * 11 10 8
39 39 H 1.08992 * 110.46306 * 274.80415 * 11 10 8
40 40 H 1.09001 * 111.00887 * 278.94185 * 12 11 10
41 41 H 1.09000 * 111.00350 * 155.08660 * 12 11 10
42 42 H 0.96696 * 114.00036 * 182.44115 * 14 13 12
43 43 H 0.97001 * 120.00180 * 180.02562 * 18 17 15
44 44 H 1.09001 * 110.03275 * 61.63889 * 23 10 8
45 45 H 1.09000 * 109.96057 * 300.32729 * 23 10 8
46 46 H 1.08002 * 127.24910 * 180.26196 * 24 7 6
47 47 H 1.09005 * 115.55113 * 359.41906 * 26 25 5
48 48 H 1.09008 * 117.50062 * 359.97438 * 27 26 25
49 49 H 1.09005 * 117.50231 * 145.02191 * 27 26 25
50 50 H 1.08997 * 117.49731 * 214.98222 * 28 26 25
51 51 H 1.08993 * 117.49710 * 0.02562 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 7 2.0184 -0.6906 1.1962
6 7 2.7550 -0.1570 2.1034
7 6 3.0254 -1.0400 3.0439
8 6 3.8445 -0.8144 4.2522
9 8 4.0133 -1.7166 5.0493
10 7 4.4046 0.3918 4.4710
11 6 4.2826 1.5682 3.5909
12 6 4.5309 2.7843 4.5177
13 6 5.6319 2.2355 5.4634
14 8 6.9218 2.3540 4.8600
15 6 5.5987 2.9486 6.7907
16 1 4.8957 3.7518 6.9546
17 6 6.4658 2.5754 7.7955
18 7 7.3216 1.5969 7.5960
19 14 6.4253 3.4597 9.4405
20 1 5.4714 2.7731 10.3481
21 1 7.7819 3.4442 10.0445
22 1 5.9902 4.8648 9.2364
23 6 5.2420 0.7518 5.6305
24 6 2.3767 -2.2435 2.6789
25 6 1.7537 -1.9777 1.5070
26 6 0.9191 -2.9388 0.7002
27 6 0.0982 -3.9774 1.4670
28 6 1.3451 -4.4083 0.6906
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3632 -1.0276 0.0005
32 1 3.1300 1.4425 -0.0005
33 1 1.6767 1.9563 -0.8900
34 1 1.6767 1.9564 0.8899
35 1 1.6766 -1.7490 -1.2492
36 1 1.6766 -0.2074 -2.1392
37 1 3.1300 -0.7216 -1.2490
38 1 3.2826 1.6176 3.1601
39 1 5.0336 1.5332 2.8017
40 1 3.6300 3.0414 5.0748
41 1 4.8949 3.6405 3.9498
42 1 7.6410 1.9911 5.3948
43 1 7.9314 1.3341 8.3031
44 1 6.1388 0.1326 5.6500
45 1 4.6770 0.6187 6.5531
46 1 2.3785 -3.1775 3.2213
47 1 0.4889 -2.5335 -0.2157
48 1 0.1620 -3.9659 2.5551
49 1 -0.8721 -4.2558 1.0555
50 1 1.1947 -4.9699 -0.2314
51 1 2.2286 -4.6800 1.2681
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592842496.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:35:57
Heat of formation + Delta-G solvation = 4.952165 kcal
Electronic energy + Delta-G solvation = -32033.671782 eV
Core-core repulsion = 27935.039744 eV
Total energy + Delta-G solvation = -4098.632038 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-43.90775 -40.88928 -38.98052 -38.18668 -37.75890 -36.12806 -34.22538 -32.31000
-31.62199 -31.33923 -29.61025 -28.38126 -28.37960 -27.32993 -25.28496 -24.57124
-23.51103 -23.22631 -21.81249 -21.46663 -20.57774 -19.93506 -19.12622 -18.11871
-17.58728 -17.35451 -17.14821 -16.50617 -16.44368 -16.14518 -15.86484 -15.42795
-15.03748 -14.94038 -14.82247 -14.77195 -14.60056 -14.51738 -13.83460 -13.53852
-13.44205 -13.29980 -13.20294 -13.10223 -12.91112 -12.81443 -12.77296 -12.59129
-12.40483 -12.35889 -12.29906 -12.23527 -12.18122 -12.00394 -11.91418 -11.76821
-11.32451 -11.20108 -11.09744 -10.66227 -10.32186 -10.14927 -9.72793 -9.60252
-8.28020 -6.44494 0.50594 0.99839 1.39005 1.41466 1.42070 1.52634
2.04125 2.30578 2.37449 2.97978 3.02748 3.14968 3.42022 3.58470
3.73302 3.78950 3.83753 3.86243 3.93313 4.06232 4.09046 4.16048
4.29432 4.37855 4.50210 4.59037 4.61230 4.63137 4.67251 4.71241
4.74652 4.79414 4.82495 4.83365 4.84071 4.95966 4.99982 5.07862
5.08787 5.17644 5.23901 5.24339 5.28321 5.28404 5.32061 5.39557
5.48253 5.71819 5.92523 6.02602 6.52296 6.63318 6.84973 7.12170
7.26041 7.33757 8.78605
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017757 B = 0.002828 C = 0.002589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1576.431110 B = 9898.207197 C =10810.633147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.154 3.846
3 C -0.147 4.147
4 C -0.161 4.161
5 N -0.260 5.260
6 N -0.256 5.256
7 C -0.038 4.038
8 C 0.597 3.403
9 O -0.589 6.589
10 N -0.604 5.604
11 C 0.121 3.879
12 C -0.111 4.111
13 C 0.236 3.764
14 O -0.588 6.588
15 C -0.558 4.558
16 H 0.069 0.931
17 C 0.024 3.976
18 N -0.917 5.917
19 Si 0.967 3.033
20 H -0.279 1.279
21 H -0.280 1.280
22 H -0.264 1.264
23 C 0.121 3.879
24 C -0.203 4.203
25 C 0.063 3.937
26 C -0.108 4.108
27 C -0.158 4.158
28 C -0.159 4.159
29 H 0.051 0.949
30 H 0.114 0.886
31 H 0.081 0.919
32 H 0.053 0.947
33 H 0.108 0.892
34 H 0.056 0.944
35 H 0.081 0.919
36 H 0.115 0.885
37 H 0.050 0.950
38 H 0.101 0.899
39 H 0.060 0.940
40 H 0.082 0.918
41 H 0.091 0.909
42 H 0.377 0.623
43 H 0.271 0.729
44 H 0.034 0.966
45 H 0.037 0.963
46 H 0.151 0.849
47 H 0.150 0.850
48 H 0.084 0.916
49 H 0.129 0.871
50 H 0.128 0.872
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.697 -6.097 -22.874 29.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.075 3.925
3 C -0.205 4.205
4 C -0.219 4.219
5 N -0.049 5.049
6 N -0.092 5.092
7 C -0.196 4.196
8 C 0.386 3.614
9 O -0.470 6.470
10 N -0.335 5.335
11 C -0.001 4.001
12 C -0.149 4.149
13 C 0.196 3.804
14 O -0.396 6.396
15 C -0.596 4.596
16 H 0.087 0.913
17 C -0.176 4.176
18 N -0.556 5.556
19 Si 0.792 3.208
20 H -0.205 1.205
21 H -0.205 1.205
22 H -0.188 1.188
23 C -0.001 4.001
24 C -0.231 4.231
25 C -0.061 4.061
26 C -0.127 4.127
27 C -0.196 4.196
28 C -0.197 4.197
29 H 0.071 0.929
30 H 0.133 0.867
31 H 0.099 0.901
32 H 0.073 0.927
33 H 0.127 0.873
34 H 0.075 0.925
35 H 0.099 0.901
36 H 0.133 0.867
37 H 0.069 0.931
38 H 0.118 0.882
39 H 0.079 0.921
40 H 0.101 0.899
41 H 0.110 0.890
42 H 0.227 0.773
43 H 0.081 0.919
44 H 0.052 0.948
45 H 0.056 0.944
46 H 0.169 0.831
47 H 0.167 0.833
48 H 0.103 0.897
49 H 0.147 0.853
50 H 0.147 0.853
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -17.660 -5.224 -23.275 29.680
hybrid contribution 1.068 -0.886 2.509 2.867
sum -16.592 -6.110 -20.766 27.274
Atomic orbital electron populations
1.22402 0.90195 1.04646 1.04633 1.21561 0.96462 0.93952 0.80560
1.21994 1.01832 0.92493 1.04156 1.22397 1.01689 1.02083 0.95725
1.46279 1.33646 1.07912 1.17081 1.73563 1.11121 1.25057 0.99434
1.21481 1.06707 0.94508 0.96903 1.17178 0.78872 0.81072 0.84290
1.90697 1.64128 1.43803 1.48334 1.48780 1.48856 1.11121 1.24769
1.22393 1.02473 0.83153 0.92086 1.22774 0.97927 0.97203 0.97022
1.19685 0.81586 0.88038 0.91138 1.86083 1.18331 1.84923 1.50271
1.21826 1.20435 1.19276 0.98050 0.91328 1.25862 0.94281 0.95045
1.02457 1.69759 1.21749 1.28751 1.35388 0.85412 0.77461 0.79132
0.78778 1.20457 1.20522 1.18806 1.22699 0.91928 0.99453 0.86069
1.21426 1.04109 0.99062 0.98538 1.20718 1.02291 0.86872 0.96261
1.20736 1.02410 0.88766 1.00765 1.23192 0.97006 1.00214 0.99153
1.23191 0.98915 0.93834 1.03728 0.92946 0.86707 0.90072 0.92744
0.87315 0.92486 0.90060 0.86688 0.93124 0.88150 0.92142 0.89945
0.89027 0.77319 0.91947 0.94780 0.94414 0.83096 0.83298 0.89728
0.85316 0.85344 0.89788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.54 8.43 71.99 0.61 -0.94 16
2 C 0.15 2.28 1.06 3.60 0.00 2.28 16
3 C -0.15 -2.26 7.88 71.98 0.57 -1.70 16
4 C -0.16 -1.60 8.43 71.98 0.61 -0.99 16
5 N -0.26 -6.28 3.18 -294.72 -0.94 -7.22 16
6 N -0.26 -8.30 8.04 -48.17 -0.39 -8.69 16
7 C -0.04 -1.49 6.97 42.46 0.30 -1.19 16
8 C 0.60 28.55 7.86 86.74 0.68 29.23 16
9 O -0.59 -32.01 17.25 -3.93 -0.07 -32.08 16
10 N -0.60 -28.83 3.34 -814.18 -2.72 -31.55 16
11 C 0.12 4.88 6.15 86.85 0.53 5.42 16
12 C -0.11 -4.74 6.22 31.99 0.20 -4.54 16
13 C 0.24 12.24 0.85 -10.35 -0.01 12.23 16
14 O -0.59 -31.60 13.07 -148.98 -1.95 -33.55 16
15 C -0.56 -30.55 8.11 25.60 0.21 -30.34 16
16 H 0.07 3.64 7.77 -2.91 -0.02 3.61 16
17 C 0.02 1.32 5.27 84.65 0.45 1.76 16
18 N -0.92 -51.71 10.96 21.45 0.24 -51.48 16
19 Si 0.97 43.34 29.54 68.60 2.03 45.36 16
20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16
22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16
23 C 0.12 6.57 5.41 86.64 0.47 7.04 16
24 C -0.20 -6.55 9.86 22.41 0.22 -6.32 16
25 C 0.06 1.51 6.08 41.40 0.25 1.76 16
26 C -0.11 -1.50 4.30 -11.54 -0.05 -1.55 16
27 C -0.16 -1.94 10.05 30.62 0.31 -1.63 16
28 C -0.16 -1.96 10.06 30.62 0.31 -1.66 16
29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16
31 H 0.08 0.64 5.27 -2.39 -0.01 0.62 16
32 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16
33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16
35 H 0.08 0.66 5.30 -2.38 -0.01 0.65 16
36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16
37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
38 H 0.10 3.62 6.19 -2.39 -0.01 3.60 16
39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16
40 H 0.08 3.36 8.04 -2.39 -0.02 3.34 16
41 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16
42 H 0.38 21.02 7.23 -74.06 -0.54 20.48 16
43 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16
44 H 0.03 2.02 8.00 -2.39 -0.02 2.00 16
45 H 0.04 2.22 7.81 -2.39 -0.02 2.20 16
46 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16
47 H 0.15 1.21 4.38 -2.38 -0.01 1.20 16
48 H 0.08 1.38 7.94 -2.38 -0.02 1.36 16
49 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16
50 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16
51 H 0.08 1.38 7.97 -2.39 -0.02 1.37 16
Total: -1.00 -74.69 401.51 2.26 -72.43
By element:
Atomic # 1 Polarization: 37.50 SS G_CDS: 0.41 Total: 37.91 kcal
Atomic # 6 Polarization: 3.20 SS G_CDS: 5.65 Total: 8.85 kcal
Atomic # 7 Polarization: -95.12 SS G_CDS: -3.81 Total: -98.93 kcal
Atomic # 8 Polarization: -63.61 SS G_CDS: -2.02 Total: -65.63 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal
Total: -74.69 2.26 -72.43 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592842496.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.380 kcal
(2) G-P(sol) polarization free energy of solvation -74.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.952 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds