Wall clock time and date at job start Wed Apr 1 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 C 1.52998 * 109.46923 * 240.00442 * 2 1 3 5 5 N 1.46494 * 109.47597 * 120.00412 * 2 1 3 6 6 N 1.28473 * 124.88386 * 240.33024 * 5 2 1 7 7 C 1.31803 * 110.07609 * 180.12711 * 6 5 2 8 8 C 1.47705 * 126.52320 * 179.85507 * 7 6 5 9 9 O 1.21574 * 120.00525 * 179.68381 * 8 7 6 10 10 N 1.34784 * 119.99693 * 359.69087 * 8 7 6 11 11 C 1.47014 * 125.64965 * 359.97113 * 10 8 7 12 12 C 1.54327 * 107.27187 * 178.98958 * 11 10 8 13 13 C 1.55149 * 102.94214 * 337.80814 * 12 11 10 14 14 O 1.42903 * 111.00594 * 277.43081 * 13 12 11 15 15 C 1.50694 * 111.00456 * 153.61700 * 13 12 11 16 16 H 1.07991 * 120.00193 * 3.17397 * 15 13 12 17 17 C 1.37884 * 119.99946 * 183.18304 * 15 13 12 18 18 N 1.31508 * 119.99961 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00010 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47251 * 119.99288 * 19 17 15 22 22 H 1.48497 * 109.47495 * 239.99680 * 19 17 15 23 23 C 1.47419 * 125.64596 * 180.02562 * 10 8 7 24 24 C 1.41504 * 106.96026 * 359.59176 * 7 6 5 25 25 C 1.35036 * 124.88857 * 59.99313 * 5 2 1 26 26 C 1.50698 * 126.38129 * 0.02562 * 25 5 2 27 27 C 1.53007 * 117.49611 * 213.61873 * 26 25 5 28 28 C 1.52998 * 117.49881 * 144.99924 * 26 25 5 29 29 H 1.09001 * 109.47062 * 299.99642 * 1 2 3 30 30 H 1.09000 * 109.47692 * 59.99718 * 1 2 3 31 31 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47114 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47133 * 299.99890 * 3 2 1 34 34 H 1.08994 * 109.47170 * 59.99968 * 3 2 1 35 35 H 1.09007 * 109.47045 * 299.99547 * 4 2 1 36 36 H 1.08995 * 109.47738 * 59.99290 * 4 2 1 37 37 H 1.09000 * 109.47715 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.88292 * 59.56755 * 11 10 8 39 39 H 1.08998 * 110.01176 * 298.48101 * 11 10 8 40 40 H 1.09002 * 110.71297 * 219.44414 * 12 11 10 41 41 H 1.09000 * 110.86709 * 96.24207 * 12 11 10 42 42 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 43 43 H 0.97001 * 119.99988 * 180.02562 * 18 17 15 44 44 H 1.09009 * 110.36844 * 85.24321 * 23 10 8 45 45 H 1.09002 * 110.37005 * 322.91821 * 23 10 8 46 46 H 1.08005 * 127.24498 * 180.21719 * 24 7 6 47 47 H 1.09001 * 115.55446 * 359.32151 * 26 25 5 48 48 H 1.08999 * 117.49436 * 359.97438 * 27 26 25 49 49 H 1.08991 * 117.49670 * 145.01912 * 27 26 25 50 50 H 1.09000 * 117.50038 * 214.97608 * 28 26 25 51 51 H 1.09001 * 117.50032 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1960 6 7 2.7551 -0.1571 2.1032 7 6 3.0250 -1.0399 3.0440 8 6 3.8435 -0.8141 4.2526 9 8 4.0118 -1.7161 5.0501 10 7 4.4035 0.3922 4.4715 11 6 4.2823 1.5652 3.5936 12 6 5.0639 2.7179 4.2586 13 6 5.1089 2.2924 5.7499 14 8 3.9003 2.6526 6.4220 15 6 6.3074 2.8852 6.4449 16 1 6.9650 3.5548 5.9105 17 6 6.5644 2.5728 7.7630 18 7 5.7634 1.7577 8.4138 19 14 8.0504 3.3071 8.6243 20 1 8.7862 4.1855 7.6795 21 1 7.6009 4.1042 9.7939 22 1 8.9459 2.2154 9.0840 23 6 5.2400 0.7535 5.6304 24 6 2.3765 -2.2434 2.6789 25 6 1.7536 -1.9778 1.5069 26 6 0.9198 -2.9391 0.6996 27 6 0.1008 -3.9797 1.4660 28 6 1.3471 -4.4081 0.6888 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1299 -0.7208 -1.2497 38 1 3.2334 1.8416 3.4870 39 1 4.7086 1.3443 2.6151 40 1 4.5315 3.6619 4.1427 41 1 6.0710 2.7917 3.8480 42 1 3.8821 2.4071 7.3571 43 1 5.9440 1.5382 9.3412 44 1 6.2783 0.4741 5.4507 45 1 4.8670 0.2697 6.5332 46 1 2.3785 -3.1775 3.2212 47 1 0.4888 -2.5336 -0.2157 48 1 0.1655 -3.9692 2.5540 49 1 -0.8693 -4.2589 1.0549 50 1 1.1970 -4.9692 -0.2335 51 1 2.2316 -4.6793 1.2653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:02 Heat of formation + Delta-G solvation = 24.307284 kcal Electronic energy + Delta-G solvation = -32071.588213 eV Core-core repulsion = 27973.795476 eV Total energy + Delta-G solvation = -4097.792737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.75442 -39.07923 -37.49152 -37.23490 -36.72203 -34.14931 -32.12691 -30.88803 -30.51376 -29.78375 -27.85751 -27.76846 -27.57108 -25.45583 -23.92830 -23.39612 -22.64411 -21.89981 -20.81009 -19.56146 -19.38472 -18.51745 -17.14217 -16.85964 -16.40856 -16.04993 -15.32905 -15.16486 -14.80166 -14.68628 -14.63465 -14.29573 -14.02777 -13.99931 -13.64349 -12.99588 -12.93842 -12.79060 -12.75103 -12.64124 -12.43926 -12.14174 -12.02712 -11.83654 -11.82246 -11.58329 -11.54510 -11.39370 -11.35641 -11.14540 -11.02393 -10.89370 -10.65880 -10.46970 -10.41819 -10.30119 -10.09888 -9.45819 -9.26679 -8.89754 -8.65716 -8.63944 -8.29287 -7.62702 -6.23225 -4.32940 1.85044 2.22482 2.38630 3.22906 3.31710 3.35186 3.67005 3.75857 3.99006 4.08745 4.20770 4.30683 4.38007 4.46075 4.57470 4.70090 4.71336 4.86825 5.04080 5.06757 5.10771 5.24442 5.31293 5.36175 5.36361 5.42391 5.48854 5.52816 5.61534 5.62424 5.69278 5.79398 5.84759 5.85830 5.89597 5.97789 6.01923 6.08066 6.24430 6.37783 6.60866 6.64425 6.83258 6.91172 6.97494 7.15439 7.36078 7.43826 7.79788 8.06162 8.12906 8.36288 8.71023 8.88922 9.36564 9.49074 10.83740 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.002824 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.628785 B = 9911.961957 C =10878.675584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 C -0.146 4.146 4 C -0.165 4.165 5 N -0.273 5.273 6 N -0.249 5.249 7 C -0.002 4.002 8 C 0.604 3.396 9 O -0.548 6.548 10 N -0.594 5.594 11 C 0.119 3.881 12 C -0.120 4.120 13 C 0.249 3.751 14 O -0.583 6.583 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.893 5.893 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.096 3.904 24 C -0.181 4.181 25 C 0.042 3.958 26 C -0.099 4.099 27 C -0.164 4.164 28 C -0.164 4.164 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.383 0.617 43 H 0.270 0.730 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.155 0.845 47 H 0.119 0.881 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 -6.836 -21.027 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.087 3.913 3 C -0.203 4.203 4 C -0.222 4.222 5 N -0.062 5.062 6 N -0.083 5.083 7 C -0.162 4.162 8 C 0.390 3.610 9 O -0.425 6.425 10 N -0.326 5.326 11 C -0.004 4.004 12 C -0.158 4.158 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.532 5.532 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.026 4.026 24 C -0.209 4.209 25 C -0.082 4.082 26 C -0.118 4.118 27 C -0.202 4.202 28 C -0.202 4.202 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.234 0.766 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.173 0.827 47 H 0.137 0.863 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.607 -6.022 -21.432 25.106 hybrid contribution 0.794 -0.704 1.290 1.670 sum -10.813 -6.726 -20.142 23.830 Atomic orbital electron populations 1.22372 0.92458 1.03714 1.03794 1.20951 0.94807 0.94013 0.81481 1.21946 1.02915 0.92217 1.03267 1.22362 1.02727 1.01309 0.95846 1.45674 1.35695 1.07582 1.17237 1.73714 1.10249 1.25123 0.99172 1.22003 1.04756 0.92367 0.97050 1.16534 0.79047 0.81950 0.83455 1.90751 1.62579 1.42742 1.46463 1.48541 1.49121 1.09763 1.25133 1.21923 1.00332 0.85642 0.92504 1.22665 0.99498 0.96861 0.96809 1.19605 0.84147 0.87679 0.87756 1.86084 1.40066 1.84454 1.28644 1.21531 1.10127 1.29040 0.96798 0.91458 1.25096 0.96811 0.94046 0.97374 1.69667 1.37723 1.34438 1.11375 0.86354 0.82160 0.78991 0.79410 1.19608 1.20782 1.20786 1.23280 0.92676 0.99657 0.86947 1.21343 1.02942 0.99831 0.96777 1.20240 1.03889 0.86592 0.97470 1.20500 1.02191 0.89097 1.00051 1.23098 0.95695 1.01339 1.00021 1.23095 0.99551 0.94782 1.02766 0.91265 0.90060 0.91054 0.90914 0.90800 0.90793 0.91050 0.90071 0.91346 0.91896 0.92576 0.90922 0.90655 0.76574 0.92012 0.92108 0.89689 0.82708 0.86286 0.87913 0.88182 0.88212 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 8.43 37.15 0.31 -0.89 16 2 C 0.17 1.54 1.06 -131.83 -0.14 1.40 16 3 C -0.15 -1.33 7.88 37.16 0.29 -1.04 16 4 C -0.16 -1.15 8.43 37.16 0.31 -0.84 16 5 N -0.27 -3.56 3.18 -44.51 -0.14 -3.70 16 6 N -0.25 -4.11 8.45 33.42 0.28 -3.82 16 7 C 0.00 -0.03 6.98 -82.77 -0.58 -0.61 16 8 C 0.60 13.74 7.86 -12.39 -0.10 13.64 16 9 O -0.55 -13.96 17.18 5.30 0.09 -13.87 16 10 N -0.59 -13.55 3.33 -171.68 -0.57 -14.12 16 11 C 0.12 2.38 5.54 -3.07 -0.02 2.36 16 12 C -0.12 -2.54 6.13 -24.90 -0.15 -2.69 16 13 C 0.25 6.26 0.89 -89.63 -0.08 6.18 16 14 O -0.58 -15.49 13.19 -35.23 -0.46 -15.95 16 15 C -0.54 -14.25 8.26 -34.44 -0.28 -14.53 16 16 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 17 C 0.07 1.85 5.27 -17.82 -0.09 1.76 16 18 N -0.89 -24.30 10.68 55.43 0.59 -23.71 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.10 2.42 5.51 -2.53 -0.01 2.41 16 24 C -0.18 -2.88 9.86 -39.36 -0.39 -3.27 16 25 C 0.04 0.53 6.08 -82.21 -0.50 0.03 16 26 C -0.10 -0.87 4.30 -91.77 -0.39 -1.26 16 27 C -0.16 -1.27 10.05 -26.73 -0.27 -1.54 16 28 C -0.16 -1.26 10.05 -26.73 -0.27 -1.53 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 5.28 -51.93 -0.27 0.20 16 32 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.07 0.46 5.30 -51.92 -0.28 0.19 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.25 7.65 -51.93 -0.40 0.85 16 39 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.49 8.02 -51.93 -0.42 1.07 16 42 H 0.38 10.46 7.18 45.56 0.33 10.79 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.06 1.57 8.03 -51.92 -0.42 1.15 16 45 H 0.08 2.40 7.48 -51.93 -0.39 2.01 16 46 H 0.16 2.34 8.06 -52.48 -0.42 1.92 16 47 H 0.12 0.81 4.38 -51.93 -0.23 0.59 16 48 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 49 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.90 7.97 -51.93 -0.41 0.48 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -31.95 401.98 -9.02 -40.97 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -7.49 Total: 12.94 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.36 Total: -0.41 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.16 Total: -45.36 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.37 Total: -29.82 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.95 -9.02 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.277 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds