Wall clock time and date at job start Wed Apr 1 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 C 1.52998 * 109.46923 * 240.00442 * 2 1 3 5 5 N 1.46494 * 109.47597 * 120.00412 * 2 1 3 6 6 N 1.28473 * 124.88386 * 240.33024 * 5 2 1 7 7 C 1.31803 * 110.07609 * 180.12711 * 6 5 2 8 8 C 1.47705 * 126.52320 * 179.85507 * 7 6 5 9 9 O 1.21574 * 120.00525 * 179.68381 * 8 7 6 10 10 N 1.34784 * 119.99693 * 359.69087 * 8 7 6 11 11 C 1.47014 * 125.64965 * 359.97113 * 10 8 7 12 12 C 1.54327 * 107.27187 * 178.98958 * 11 10 8 13 13 C 1.55149 * 102.94214 * 337.80814 * 12 11 10 14 14 O 1.42903 * 111.00594 * 277.43081 * 13 12 11 15 15 C 1.50694 * 111.00456 * 153.61700 * 13 12 11 16 16 H 1.07991 * 120.00193 * 3.17397 * 15 13 12 17 17 C 1.37884 * 119.99946 * 183.18304 * 15 13 12 18 18 N 1.31508 * 119.99961 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00010 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47251 * 119.99288 * 19 17 15 22 22 H 1.48497 * 109.47495 * 239.99680 * 19 17 15 23 23 C 1.47419 * 125.64596 * 180.02562 * 10 8 7 24 24 C 1.41504 * 106.96026 * 359.59176 * 7 6 5 25 25 C 1.35036 * 124.88857 * 59.99313 * 5 2 1 26 26 C 1.50698 * 126.38129 * 0.02562 * 25 5 2 27 27 C 1.53007 * 117.49611 * 213.61873 * 26 25 5 28 28 C 1.52998 * 117.49881 * 144.99924 * 26 25 5 29 29 H 1.09001 * 109.47062 * 299.99642 * 1 2 3 30 30 H 1.09000 * 109.47692 * 59.99718 * 1 2 3 31 31 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47114 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47133 * 299.99890 * 3 2 1 34 34 H 1.08994 * 109.47170 * 59.99968 * 3 2 1 35 35 H 1.09007 * 109.47045 * 299.99547 * 4 2 1 36 36 H 1.08995 * 109.47738 * 59.99290 * 4 2 1 37 37 H 1.09000 * 109.47715 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.88292 * 59.56755 * 11 10 8 39 39 H 1.08998 * 110.01176 * 298.48101 * 11 10 8 40 40 H 1.09002 * 110.71297 * 219.44414 * 12 11 10 41 41 H 1.09000 * 110.86709 * 96.24207 * 12 11 10 42 42 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 43 43 H 0.97001 * 119.99988 * 180.02562 * 18 17 15 44 44 H 1.09009 * 110.36844 * 85.24321 * 23 10 8 45 45 H 1.09002 * 110.37005 * 322.91821 * 23 10 8 46 46 H 1.08005 * 127.24498 * 180.21719 * 24 7 6 47 47 H 1.09001 * 115.55446 * 359.32151 * 26 25 5 48 48 H 1.08999 * 117.49436 * 359.97438 * 27 26 25 49 49 H 1.08991 * 117.49670 * 145.01912 * 27 26 25 50 50 H 1.09000 * 117.50038 * 214.97608 * 28 26 25 51 51 H 1.09001 * 117.50032 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1960 6 7 2.7551 -0.1571 2.1032 7 6 3.0250 -1.0399 3.0440 8 6 3.8435 -0.8141 4.2526 9 8 4.0118 -1.7161 5.0501 10 7 4.4035 0.3922 4.4715 11 6 4.2823 1.5652 3.5936 12 6 5.0639 2.7179 4.2586 13 6 5.1089 2.2924 5.7499 14 8 3.9003 2.6526 6.4220 15 6 6.3074 2.8852 6.4449 16 1 6.9650 3.5548 5.9105 17 6 6.5644 2.5728 7.7630 18 7 5.7634 1.7577 8.4138 19 14 8.0504 3.3071 8.6243 20 1 8.7862 4.1855 7.6795 21 1 7.6009 4.1042 9.7939 22 1 8.9459 2.2154 9.0840 23 6 5.2400 0.7535 5.6304 24 6 2.3765 -2.2434 2.6789 25 6 1.7536 -1.9778 1.5069 26 6 0.9198 -2.9391 0.6996 27 6 0.1008 -3.9797 1.4660 28 6 1.3471 -4.4081 0.6888 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1299 -0.7208 -1.2497 38 1 3.2334 1.8416 3.4870 39 1 4.7086 1.3443 2.6151 40 1 4.5315 3.6619 4.1427 41 1 6.0710 2.7917 3.8480 42 1 3.8821 2.4071 7.3571 43 1 5.9440 1.5382 9.3412 44 1 6.2783 0.4741 5.4507 45 1 4.8670 0.2697 6.5332 46 1 2.3785 -3.1775 3.2212 47 1 0.4888 -2.5336 -0.2157 48 1 0.1655 -3.9692 2.5540 49 1 -0.8693 -4.2589 1.0549 50 1 1.1970 -4.9692 -0.2335 51 1 2.2316 -4.6793 1.2653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:01 Heat of formation + Delta-G solvation = 3.365111 kcal Electronic energy + Delta-G solvation = -32072.496334 eV Core-core repulsion = 27973.795476 eV Total energy + Delta-G solvation = -4098.700858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.89530 -40.88311 -38.94066 -38.18964 -37.75825 -36.11260 -34.21072 -32.34425 -31.62264 -31.34307 -29.59364 -28.39010 -28.37938 -27.32630 -25.28489 -24.57592 -23.42893 -23.22747 -21.80825 -21.49697 -20.54757 -19.91114 -19.13753 -18.12070 -17.57132 -17.24697 -17.15315 -16.51384 -16.41267 -16.23120 -15.86283 -15.44276 -15.06403 -14.97691 -14.80573 -14.70026 -14.57978 -14.53529 -13.76322 -13.55226 -13.37235 -13.33296 -13.20734 -13.10587 -12.89565 -12.82501 -12.77925 -12.57301 -12.40583 -12.34160 -12.23394 -12.21990 -12.13427 -12.01004 -11.90657 -11.85502 -11.33307 -11.19793 -11.12429 -10.67635 -10.35815 -10.12688 -9.72084 -9.49930 -8.26289 -6.44315 0.52641 1.00099 1.39862 1.42129 1.43698 1.55397 2.07296 2.32558 2.38315 2.99328 3.02605 3.15935 3.42228 3.59335 3.72972 3.77972 3.83413 3.87022 3.93253 4.08986 4.09036 4.15358 4.28680 4.36790 4.50722 4.60338 4.60771 4.66117 4.70571 4.71220 4.74422 4.78364 4.82071 4.82630 4.83430 4.98684 4.99839 5.06027 5.08470 5.21245 5.23486 5.23722 5.28072 5.29198 5.35512 5.42284 5.45348 5.73838 5.92508 6.02335 6.54315 6.65467 6.86430 7.13920 7.27234 7.34190 8.79654 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.002824 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.628785 B = 9911.961957 C =10878.675584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 C -0.146 4.146 4 C -0.160 4.160 5 N -0.260 5.260 6 N -0.254 5.254 7 C -0.040 4.040 8 C 0.597 3.403 9 O -0.590 6.590 10 N -0.601 5.601 11 C 0.131 3.869 12 C -0.113 4.113 13 C 0.235 3.765 14 O -0.590 6.590 15 C -0.555 4.555 16 H 0.072 0.928 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.283 1.283 23 C 0.108 3.892 24 C -0.204 4.204 25 C 0.062 3.938 26 C -0.108 4.108 27 C -0.160 4.160 28 C -0.157 4.157 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.376 0.624 43 H 0.270 0.730 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.151 0.849 47 H 0.150 0.850 48 H 0.083 0.917 49 H 0.129 0.871 50 H 0.129 0.871 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 -6.508 -24.995 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 C -0.204 4.204 4 C -0.218 4.218 5 N -0.050 5.050 6 N -0.090 5.090 7 C -0.198 4.198 8 C 0.386 3.614 9 O -0.471 6.471 10 N -0.332 5.332 11 C 0.009 3.991 12 C -0.150 4.150 13 C 0.194 3.806 14 O -0.398 6.398 15 C -0.593 4.593 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.557 5.557 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.208 1.208 23 C -0.014 4.014 24 C -0.232 4.232 25 C -0.062 4.062 26 C -0.127 4.127 27 C -0.198 4.198 28 C -0.194 4.194 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.168 0.832 47 H 0.167 0.833 48 H 0.101 0.899 49 H 0.147 0.853 50 H 0.147 0.853 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.969 -5.666 -25.437 29.109 hybrid contribution 1.129 -0.830 2.429 2.805 sum -11.840 -6.497 -23.008 26.679 Atomic orbital electron populations 1.22404 0.90424 1.04615 1.04517 1.21554 0.96341 0.93988 0.80645 1.21984 1.01950 0.92471 1.03960 1.22388 1.01784 1.02034 0.95566 1.46259 1.33705 1.07885 1.17139 1.73600 1.10996 1.25001 0.99404 1.21508 1.06809 0.94426 0.97013 1.17137 0.78776 0.81202 0.84316 1.90696 1.64146 1.43933 1.48319 1.48611 1.48957 1.10780 1.24827 1.21929 1.00414 0.84157 0.92649 1.22677 1.00828 0.97688 0.93844 1.19838 0.83482 0.87364 0.89867 1.86075 1.41048 1.84481 1.28185 1.21818 1.10732 1.29364 0.97392 0.90995 1.25894 0.99411 0.94289 0.98095 1.69791 1.39140 1.35242 1.11548 0.85335 0.78782 0.78159 0.78308 1.18621 1.20423 1.20844 1.22904 0.92073 0.99902 0.86548 1.21425 1.04233 0.99080 0.98511 1.20717 1.02320 0.86873 0.96314 1.20734 1.02435 0.88778 1.00739 1.23179 0.97109 1.00350 0.99116 1.23177 0.98822 0.93751 1.03693 0.93258 0.86647 0.90055 0.92466 0.87303 0.92908 0.90076 0.86693 0.92908 0.91793 0.90427 0.89634 0.89128 0.77463 0.92016 0.93424 0.93598 0.83168 0.83287 0.89863 0.85336 0.85258 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.43 71.98 0.61 -1.12 16 2 C 0.15 2.36 1.06 3.60 0.00 2.37 16 3 C -0.15 -2.32 7.88 71.98 0.57 -1.76 16 4 C -0.16 -1.57 8.43 71.98 0.61 -0.97 16 5 N -0.26 -6.48 3.18 -294.74 -0.94 -7.42 16 6 N -0.25 -8.45 8.45 -48.18 -0.41 -8.86 16 7 C -0.04 -1.58 6.98 42.46 0.30 -1.28 16 8 C 0.60 28.94 7.86 86.74 0.68 29.62 16 9 O -0.59 -32.49 17.18 -3.95 -0.07 -32.56 16 10 N -0.60 -28.78 3.33 -815.35 -2.71 -31.49 16 11 C 0.13 5.27 5.54 86.73 0.48 5.75 16 12 C -0.11 -4.73 6.13 31.78 0.19 -4.54 16 13 C 0.23 12.15 0.89 -10.15 -0.01 12.15 16 14 O -0.59 -32.45 13.19 -148.98 -1.96 -34.42 16 15 C -0.55 -29.92 8.26 25.60 0.21 -29.71 16 16 H 0.07 3.73 7.78 -2.92 -0.02 3.70 16 17 C 0.02 1.28 5.27 84.66 0.45 1.72 16 18 N -0.92 -51.84 10.68 21.45 0.23 -51.61 16 19 Si 0.97 42.82 29.54 68.60 2.03 44.84 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.11 5.81 5.51 86.86 0.48 6.29 16 24 C -0.20 -6.75 9.86 22.41 0.22 -6.53 16 25 C 0.06 1.53 6.08 41.40 0.25 1.78 16 26 C -0.11 -1.56 4.30 -11.54 -0.05 -1.61 16 27 C -0.16 -2.08 10.05 30.60 0.31 -1.77 16 28 C -0.16 -1.97 10.05 30.59 0.31 -1.67 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.72 5.28 -2.39 -0.01 0.70 16 32 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 33 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 35 H 0.08 0.66 5.30 -2.38 -0.01 0.65 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 2.56 7.65 -2.39 -0.02 2.55 16 39 H 0.08 2.79 7.78 -2.39 -0.02 2.77 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.09 3.51 8.02 -2.39 -0.02 3.49 16 42 H 0.38 21.57 7.18 -74.06 -0.53 21.04 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.05 2.61 8.03 -2.38 -0.02 2.59 16 45 H 0.05 2.78 7.48 -2.39 -0.02 2.77 16 46 H 0.15 4.91 8.06 -2.91 -0.02 4.88 16 47 H 0.15 1.28 4.38 -2.39 -0.01 1.27 16 48 H 0.08 1.44 7.94 -2.39 -0.02 1.42 16 49 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.08 1.40 7.97 -2.39 -0.02 1.38 16 Total: -1.00 -74.95 401.98 2.18 -72.77 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.41 Total: 40.01 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.60 Total: 8.73 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -3.83 Total: -99.38 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -2.03 Total: -66.97 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.95 2.18 -72.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.134 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds