Wall clock time and date at job start Wed Apr 1 2020 04:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 209.88101 * 3 2 1 5 5 C 1.52998 * 109.47304 * 57.44498 * 4 3 2 6 6 H 1.09001 * 109.47187 * 304.99667 * 5 4 3 7 7 C 1.53001 * 109.46995 * 184.99939 * 5 4 3 8 8 O 1.42899 * 109.47421 * 305.00021 * 7 5 4 9 9 N 1.46497 * 109.47333 * 65.00271 * 5 4 3 10 10 C 1.34780 * 120.00031 * 205.00286 * 9 5 4 11 11 O 1.21273 * 119.99822 * 359.97438 * 10 9 5 12 12 C 1.50695 * 119.99639 * 179.97438 * 10 9 5 13 13 C 1.52999 * 109.46918 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47451 * 180.02562 * 13 12 10 15 15 C 1.39866 * 126.04287 * 89.96846 * 14 13 12 16 16 C 1.50705 * 125.89802 * 0.03191 * 15 14 13 17 17 N 1.30837 * 108.20458 * 180.02562 * 15 14 13 18 18 N 1.40086 * 108.20700 * 0.02562 * 17 15 14 19 19 C 1.46491 * 126.04129 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.46957 * 90.02579 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 C 1.34955 * 107.92007 * 0.26426 * 18 17 15 29 29 C 1.50708 * 126.12162 * 179.73553 * 28 18 17 30 30 H 1.08997 * 109.47686 * 272.67098 * 1 2 3 31 31 H 1.09002 * 109.47749 * 32.67721 * 1 2 3 32 32 H 1.09008 * 109.47025 * 152.67132 * 1 2 3 33 33 H 1.09007 * 109.47000 * 297.44230 * 4 3 2 34 34 H 1.09003 * 109.46984 * 177.44423 * 4 3 2 35 35 H 1.09002 * 109.46913 * 65.00348 * 7 5 4 36 36 H 1.09001 * 109.47205 * 184.99495 * 7 5 4 37 37 H 0.96700 * 114.00232 * 180.02562 * 8 7 5 38 38 H 0.97005 * 119.99776 * 24.98944 * 9 5 4 39 39 H 1.08997 * 109.47366 * 60.00063 * 12 10 9 40 40 H 1.09000 * 109.47755 * 299.99776 * 12 10 9 41 41 H 1.09001 * 109.47356 * 60.00206 * 13 12 10 42 42 H 1.09002 * 109.47319 * 299.99905 * 13 12 10 43 43 H 1.08999 * 109.46544 * 269.99193 * 16 15 14 44 44 H 1.09000 * 109.47294 * 29.99156 * 16 15 14 45 45 H 1.08993 * 109.46794 * 149.99571 * 16 15 14 46 46 H 1.09004 * 109.47166 * 330.02845 * 19 18 17 47 47 H 1.08994 * 109.47507 * 210.02551 * 19 18 17 48 48 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.47042 * 90.02700 * 29 28 18 50 50 H 1.09007 * 109.46511 * 210.02061 * 29 28 18 51 51 H 1.08991 * 109.47237 * 330.02091 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0018 0.0003 5 6 4.6289 -0.7740 -1.2154 6 1 4.1952 -1.7740 -1.2168 7 6 6.1538 -0.8796 -1.1489 8 8 6.7172 0.4282 -1.0296 9 7 4.2411 -0.0717 -2.4412 10 6 4.1151 -0.7532 -3.5971 11 8 4.3232 -1.9476 -3.6226 12 6 3.7157 -0.0307 -4.8579 13 6 3.6462 -1.0275 -6.0165 14 6 3.2473 -0.3050 -7.2775 15 6 4.1189 0.2849 -8.1988 16 6 5.6227 0.3078 -8.1030 17 7 3.4032 0.8132 -9.1582 18 7 2.0514 0.5763 -8.8771 19 6 0.9135 1.0005 -9.6964 20 6 0.5870 -0.0766 -10.6986 21 1 1.1686 -0.9863 -10.7225 22 6 -0.4584 0.0966 -11.5809 23 7 -1.1669 1.2042 -11.5515 24 14 -0.8679 -1.2417 -12.8180 25 1 0.0715 -2.3789 -12.6462 26 1 -2.2591 -1.7117 -12.5964 27 1 -0.7422 -0.6988 -14.1945 28 6 1.9823 -0.1060 -7.7148 29 6 0.7221 -0.5676 -7.0291 30 1 -0.3634 0.0479 1.0265 31 1 -0.3635 0.8650 -0.5548 32 1 -0.3633 -0.9130 -0.4718 33 1 4.4815 -0.4716 0.9125 34 1 4.4804 1.0287 -0.0454 35 1 6.4391 -1.4785 -0.2839 36 1 6.5252 -1.3538 -2.0574 37 1 7.6830 0.4376 -0.9825 38 1 4.0749 0.8838 -2.4207 39 1 4.4534 0.7389 -5.0849 40 1 2.7390 0.4324 -4.7175 41 1 2.9087 -1.7974 -5.7898 42 1 4.6231 -1.4902 -6.1569 43 1 5.9384 1.1975 -7.5581 44 1 5.9669 -0.5822 -7.5760 45 1 6.0504 0.3248 -9.1053 46 1 1.1674 1.9210 -10.2221 47 1 0.0492 1.1746 -9.0556 48 1 -1.9021 1.3262 -12.1725 49 1 0.4615 -1.5656 -7.3814 50 1 0.8836 -0.5933 -5.9514 51 1 -0.0899 0.1223 -7.2585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592923075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:22 Heat of formation + Delta-G solvation = 2.931920 kcal Electronic energy + Delta-G solvation = -29925.462966 eV Core-core repulsion = 25826.743323 eV Total energy + Delta-G solvation = -4098.719642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61471 -39.96541 -37.71005 -35.65828 -34.37148 -34.01472 -33.35109 -32.47169 -31.64320 -30.15519 -28.97099 -28.77786 -26.68624 -26.09936 -25.85900 -23.97478 -22.35714 -21.41820 -20.41899 -18.78524 -18.61669 -18.05358 -17.29542 -16.84961 -16.66690 -16.13413 -15.66861 -15.39378 -14.80739 -14.63844 -14.47444 -14.31184 -14.16131 -13.85836 -13.71750 -13.52863 -13.45371 -13.29128 -12.95511 -12.91218 -12.63247 -12.48162 -12.28858 -12.09499 -12.03842 -11.91198 -11.77370 -11.62477 -11.32346 -11.23135 -10.93811 -10.81248 -10.68730 -10.51785 -10.25536 -10.07100 -9.94565 -9.80637 -9.69310 -9.57326 -9.22268 -8.64828 -8.16055 -7.44933 -6.26165 -4.33179 2.44160 2.48103 2.64776 2.77376 3.02580 3.20101 3.28034 3.33970 3.43450 3.63684 3.88225 3.91983 4.30096 4.51321 4.75748 4.83212 4.93278 5.02669 5.07708 5.23054 5.24050 5.26206 5.30295 5.31592 5.35231 5.37462 5.43450 5.45501 5.63826 5.67777 5.68775 5.81121 5.86034 5.96320 6.01169 6.04617 6.08820 6.26015 6.28718 6.38646 6.49344 6.57339 6.87996 7.04336 7.13485 7.20309 7.37954 7.44669 7.53832 7.67195 7.89080 8.07553 8.19206 8.68498 8.76989 9.33229 10.81480 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.002218 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.470768 B =12623.106984 C =14061.466971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.183 4.183 3 C -0.195 4.195 4 C -0.006 4.006 5 C 0.154 3.846 6 H 0.102 0.898 7 C 0.063 3.937 8 O -0.570 6.570 9 N -0.722 5.722 10 C 0.516 3.484 11 O -0.544 6.544 12 C -0.133 4.133 13 C -0.009 4.009 14 C -0.268 4.268 15 C 0.050 3.950 16 C -0.064 4.064 17 N -0.297 5.297 18 N -0.325 5.325 19 C 0.257 3.743 20 C -0.534 4.534 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.280 1.280 28 C 0.093 3.907 29 C -0.086 4.086 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.380 0.620 38 H 0.403 0.597 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.267 0.733 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -1.329 25.560 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.183 4.183 3 C -0.195 4.195 4 C -0.043 4.043 5 C 0.048 3.952 6 H 0.120 0.880 7 C -0.016 4.016 8 O -0.375 6.375 9 N -0.374 5.374 10 C 0.304 3.696 11 O -0.421 6.421 12 C -0.173 4.173 13 C -0.048 4.048 14 C -0.280 4.280 15 C -0.114 4.114 16 C -0.123 4.123 17 N -0.121 5.121 18 N -0.105 5.105 19 C 0.139 3.861 20 C -0.572 4.572 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.038 4.038 29 C -0.144 4.144 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.227 0.773 38 H 0.237 0.763 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.920 -1.220 24.204 26.187 hybrid contribution 0.052 -0.726 -0.038 0.729 sum 9.972 -1.946 24.167 26.215 Atomic orbital electron populations 1.18880 0.84696 1.03352 1.02908 1.22434 0.93942 1.01096 1.00806 1.22141 0.93463 1.01952 1.01942 1.18829 0.84590 1.02802 0.98078 1.20977 0.92323 0.97829 0.84026 0.87999 1.22654 0.93669 0.84628 1.00636 1.86442 1.25531 1.28415 1.97133 1.46025 1.71040 1.12349 1.08017 1.21053 0.75824 0.87737 0.85011 1.90677 1.50299 1.15177 1.85972 1.21739 1.03415 1.00171 0.91998 1.19380 1.01899 0.94981 0.88583 1.19354 0.91334 1.15170 1.02169 1.21939 0.96163 0.99651 0.93639 1.20022 0.88193 1.01789 1.02276 1.77268 0.87580 1.24639 1.22636 1.49234 1.05586 1.39514 1.16140 1.19651 0.79449 0.97209 0.89801 1.21347 1.15606 1.03195 1.17070 0.91757 1.24933 0.95483 0.96159 0.97271 1.69931 1.20185 1.25286 1.37623 0.86305 0.78251 0.81478 0.80693 1.19562 1.20647 1.20623 1.20774 0.96303 0.97339 0.89402 1.20347 0.93141 1.02105 0.98800 0.90306 0.90047 0.90060 0.88480 0.88303 0.92685 0.92480 0.77313 0.76273 0.88979 0.89159 0.91468 0.91335 0.91606 0.91271 0.91601 0.93094 0.93115 0.92329 0.90476 0.91123 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.06 16 2 C -0.18 -1.81 14.13 -37.12 -0.52 -2.33 16 3 C -0.19 -1.89 13.06 -37.12 -0.48 -2.38 16 4 C -0.01 -0.04 4.97 -29.52 -0.15 -0.19 16 5 C 0.15 1.30 2.34 -67.93 -0.16 1.14 16 6 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 7 C 0.06 0.44 6.85 37.16 0.25 0.70 16 8 O -0.57 -3.68 12.83 -35.23 -0.45 -4.13 16 9 N -0.72 -6.89 4.72 -53.81 -0.25 -7.14 16 10 C 0.52 6.29 7.79 -10.99 -0.09 6.20 16 11 O -0.54 -8.39 15.64 5.56 0.09 -8.31 16 12 C -0.13 -1.60 5.68 -27.89 -0.16 -1.75 16 13 C -0.01 -0.14 4.41 -27.88 -0.12 -0.26 16 14 C -0.27 -4.87 5.35 -105.05 -0.56 -5.43 16 15 C 0.05 0.97 7.22 -82.40 -0.59 0.38 16 16 C -0.06 -0.93 10.26 36.01 0.37 -0.56 16 17 N -0.30 -6.92 12.58 33.67 0.42 -6.50 16 18 N -0.33 -7.68 3.60 -58.31 -0.21 -7.89 16 19 C 0.26 6.64 6.00 -5.20 -0.03 6.61 16 20 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 24 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.09 1.88 6.93 -82.26 -0.57 1.31 16 29 C -0.09 -1.43 9.72 36.01 0.35 -1.08 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.10 0.69 7.73 -51.93 -0.40 0.29 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.38 1.01 9.12 45.56 0.42 1.43 16 38 H 0.40 3.30 8.60 -40.82 -0.35 2.95 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 42 H 0.07 1.01 7.21 -51.93 -0.37 0.64 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.05 1.30 7.04 -51.93 -0.37 0.93 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 51 H 0.07 1.23 7.07 -51.93 -0.37 0.86 16 LS Contribution 434.37 15.07 6.55 6.55 Total: -1.00 -34.82 434.37 -8.32 -43.14 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.64 Total: 3.60 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.53 Total: -11.12 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.70 Total: -46.06 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.36 Total: -12.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.55 Total: 6.55 kcal Total: -34.82 -8.32 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592923075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.073 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds