Wall clock time and date at job start Wed Apr 1 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 209.88101 * 3 2 1 5 5 C 1.52998 * 109.47304 * 57.44498 * 4 3 2 6 6 H 1.09001 * 109.47187 * 304.99667 * 5 4 3 7 7 C 1.53001 * 109.46995 * 184.99939 * 5 4 3 8 8 O 1.42899 * 109.47421 * 305.00021 * 7 5 4 9 9 N 1.46497 * 109.47333 * 65.00271 * 5 4 3 10 10 C 1.34780 * 120.00031 * 205.00286 * 9 5 4 11 11 O 1.21273 * 119.99822 * 359.97438 * 10 9 5 12 12 C 1.50695 * 119.99639 * 179.97438 * 10 9 5 13 13 C 1.52999 * 109.46918 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47451 * 180.02562 * 13 12 10 15 15 C 1.39866 * 126.04287 * 89.96846 * 14 13 12 16 16 C 1.50705 * 125.89802 * 0.03191 * 15 14 13 17 17 N 1.30837 * 108.20458 * 180.02562 * 15 14 13 18 18 N 1.40086 * 108.20700 * 0.02562 * 17 15 14 19 19 C 1.46491 * 126.04129 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.46957 * 90.02579 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 C 1.34955 * 107.92007 * 0.26426 * 18 17 15 29 29 C 1.50708 * 126.12162 * 179.73553 * 28 18 17 30 30 H 1.08997 * 109.47686 * 272.67098 * 1 2 3 31 31 H 1.09002 * 109.47749 * 32.67721 * 1 2 3 32 32 H 1.09008 * 109.47025 * 152.67132 * 1 2 3 33 33 H 1.09007 * 109.47000 * 297.44230 * 4 3 2 34 34 H 1.09003 * 109.46984 * 177.44423 * 4 3 2 35 35 H 1.09002 * 109.46913 * 65.00348 * 7 5 4 36 36 H 1.09001 * 109.47205 * 184.99495 * 7 5 4 37 37 H 0.96700 * 114.00232 * 180.02562 * 8 7 5 38 38 H 0.97005 * 119.99776 * 24.98944 * 9 5 4 39 39 H 1.08997 * 109.47366 * 60.00063 * 12 10 9 40 40 H 1.09000 * 109.47755 * 299.99776 * 12 10 9 41 41 H 1.09001 * 109.47356 * 60.00206 * 13 12 10 42 42 H 1.09002 * 109.47319 * 299.99905 * 13 12 10 43 43 H 1.08999 * 109.46544 * 269.99193 * 16 15 14 44 44 H 1.09000 * 109.47294 * 29.99156 * 16 15 14 45 45 H 1.08993 * 109.46794 * 149.99571 * 16 15 14 46 46 H 1.09004 * 109.47166 * 330.02845 * 19 18 17 47 47 H 1.08994 * 109.47507 * 210.02551 * 19 18 17 48 48 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.47042 * 90.02700 * 29 28 18 50 50 H 1.09007 * 109.46511 * 210.02061 * 29 28 18 51 51 H 1.08991 * 109.47237 * 330.02091 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0018 0.0003 5 6 4.6289 -0.7740 -1.2154 6 1 4.1952 -1.7740 -1.2168 7 6 6.1538 -0.8796 -1.1489 8 8 6.7172 0.4282 -1.0296 9 7 4.2411 -0.0717 -2.4412 10 6 4.1151 -0.7532 -3.5971 11 8 4.3232 -1.9476 -3.6226 12 6 3.7157 -0.0307 -4.8579 13 6 3.6462 -1.0275 -6.0165 14 6 3.2473 -0.3050 -7.2775 15 6 4.1189 0.2849 -8.1988 16 6 5.6227 0.3078 -8.1030 17 7 3.4032 0.8132 -9.1582 18 7 2.0514 0.5763 -8.8771 19 6 0.9135 1.0005 -9.6964 20 6 0.5870 -0.0766 -10.6986 21 1 1.1686 -0.9863 -10.7225 22 6 -0.4584 0.0966 -11.5809 23 7 -1.1669 1.2042 -11.5515 24 14 -0.8679 -1.2417 -12.8180 25 1 0.0715 -2.3789 -12.6462 26 1 -2.2591 -1.7117 -12.5964 27 1 -0.7422 -0.6988 -14.1945 28 6 1.9823 -0.1060 -7.7148 29 6 0.7221 -0.5676 -7.0291 30 1 -0.3634 0.0479 1.0265 31 1 -0.3635 0.8650 -0.5548 32 1 -0.3633 -0.9130 -0.4718 33 1 4.4815 -0.4716 0.9125 34 1 4.4804 1.0287 -0.0454 35 1 6.4391 -1.4785 -0.2839 36 1 6.5252 -1.3538 -2.0574 37 1 7.6830 0.4376 -0.9825 38 1 4.0749 0.8838 -2.4207 39 1 4.4534 0.7389 -5.0849 40 1 2.7390 0.4324 -4.7175 41 1 2.9087 -1.7974 -5.7898 42 1 4.6231 -1.4902 -6.1569 43 1 5.9384 1.1975 -7.5581 44 1 5.9669 -0.5822 -7.5760 45 1 6.0504 0.3248 -9.1053 46 1 1.1674 1.9210 -10.2221 47 1 0.0492 1.1746 -9.0556 48 1 -1.9021 1.3262 -12.1725 49 1 0.4615 -1.5656 -7.3814 50 1 0.8836 -0.5933 -5.9514 51 1 -0.0899 0.1223 -7.2585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592923075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:21 Heat of formation + Delta-G solvation = -20.676529 kcal Electronic energy + Delta-G solvation = -29926.486705 eV Core-core repulsion = 25826.743323 eV Total energy + Delta-G solvation = -4099.743382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.16034 -40.88406 -38.38631 -36.28681 -36.07419 -34.84601 -34.73793 -34.19928 -32.47667 -31.50379 -30.49192 -29.44684 -28.01974 -27.62199 -26.66438 -25.41489 -23.98771 -22.23508 -21.30509 -20.31530 -20.14621 -18.83849 -18.66658 -17.97956 -17.71079 -17.23202 -16.83642 -16.47825 -16.27375 -15.95408 -15.51983 -15.22191 -14.90485 -14.79462 -14.71536 -14.55017 -14.40333 -14.28743 -14.09131 -14.01942 -13.92932 -13.75784 -13.53166 -13.36920 -13.27299 -13.14587 -12.86084 -12.83117 -12.73782 -12.62915 -12.59175 -12.48516 -12.24935 -11.86783 -11.70010 -11.17129 -11.06045 -10.85655 -10.76269 -10.59404 -10.57216 -10.02355 -9.84368 -9.02978 -8.35967 -6.53582 1.16924 1.33826 1.35763 1.48381 1.70467 1.74351 1.79653 1.88545 1.93809 2.30684 2.32501 2.93403 3.32412 3.41307 3.78303 3.88886 3.93825 4.01202 4.14317 4.23224 4.26899 4.35332 4.38515 4.54993 4.56577 4.63716 4.65146 4.70268 4.71902 4.77349 4.80138 4.83707 4.85597 4.86653 4.89666 4.90541 4.96142 5.02843 5.04512 5.13298 5.14251 5.30380 5.44185 5.49511 5.54386 5.56456 5.79320 6.05267 6.31242 6.57967 6.61588 6.74779 6.92345 7.11032 7.17795 7.30650 8.70315 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.002218 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.470768 B =12623.106984 C =14061.466971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.208 4.208 3 C -0.212 4.212 4 C 0.001 3.999 5 C 0.150 3.850 6 H 0.084 0.916 7 C 0.071 3.929 8 O -0.579 6.579 9 N -0.711 5.711 10 C 0.519 3.481 11 O -0.580 6.580 12 C -0.125 4.125 13 C -0.002 4.002 14 C -0.258 4.258 15 C 0.054 3.946 16 C -0.062 4.062 17 N -0.350 5.350 18 N -0.356 5.356 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.046 0.954 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.972 3.028 25 H -0.275 1.275 26 H -0.265 1.265 27 H -0.273 1.273 28 C 0.078 3.922 29 C -0.082 4.082 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.397 0.603 38 H 0.411 0.589 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.047 0.953 48 H 0.274 0.726 49 H 0.076 0.924 50 H 0.104 0.896 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 -1.906 27.407 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.208 4.208 3 C -0.212 4.212 4 C -0.035 4.035 5 C 0.046 3.954 6 H 0.102 0.898 7 C -0.008 4.008 8 O -0.387 6.387 9 N -0.362 5.362 10 C 0.307 3.693 11 O -0.460 6.460 12 C -0.165 4.165 13 C -0.041 4.041 14 C -0.269 4.269 15 C -0.111 4.111 16 C -0.121 4.121 17 N -0.174 5.174 18 N -0.136 5.136 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.064 0.936 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.190 1.190 27 H -0.199 1.199 28 C -0.052 4.052 29 C -0.140 4.140 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.037 0.963 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.122 0.878 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.905 -1.766 26.097 28.339 hybrid contribution -0.156 -0.518 -0.506 0.741 sum 10.749 -2.284 25.591 27.850 Atomic orbital electron populations 1.19032 0.83256 1.03788 1.04084 1.23244 0.95197 1.01353 1.00973 1.22785 0.94454 1.01936 1.02042 1.18885 0.83259 1.03148 0.98256 1.21060 0.93561 0.96996 0.83828 0.89757 1.22489 0.92324 0.85120 1.00834 1.86394 1.27282 1.27944 1.97095 1.45959 1.69816 1.12707 1.07762 1.20969 0.75517 0.87179 0.85605 1.90669 1.52222 1.16612 1.86514 1.21617 1.04423 0.99560 0.90935 1.19339 1.01739 0.95109 0.87890 1.19721 0.90319 1.14014 1.02892 1.22788 0.98303 0.97576 0.92387 1.20209 0.84735 1.04068 1.03068 1.77204 0.87817 1.27226 1.25109 1.49002 1.05263 1.41891 1.17410 1.19129 0.80341 0.95419 0.89536 1.21448 1.16022 1.03096 1.18425 0.93564 1.25751 0.95044 0.98346 0.98799 1.70010 1.20520 1.26731 1.38386 0.85305 0.78436 0.78439 0.78284 1.19954 1.19021 1.19861 1.21452 0.98407 0.96835 0.88506 1.20430 0.91526 1.01520 1.00540 0.88771 0.89365 0.89729 0.86441 0.87632 0.90333 0.94293 0.75296 0.75330 0.87512 0.88361 0.91967 0.90985 0.89090 0.89023 0.91653 0.96283 0.93531 0.91712 0.90535 0.87761 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.58 10.32 70.18 0.72 0.15 16 2 C -0.21 -3.90 14.13 31.13 0.44 -3.46 16 3 C -0.21 -3.85 13.06 31.13 0.41 -3.44 16 4 C 0.00 0.01 4.97 28.79 0.14 0.16 16 5 C 0.15 2.30 2.34 44.99 0.11 2.40 16 6 H 0.08 1.62 7.58 -2.39 -0.02 1.60 16 7 C 0.07 0.84 6.85 71.98 0.49 1.34 16 8 O -0.58 -5.91 12.83 -148.98 -1.91 -7.82 16 9 N -0.71 -12.28 4.72 -442.55 -2.09 -14.37 16 10 C 0.52 11.78 7.79 87.65 0.68 12.46 16 11 O -0.58 -17.27 15.64 -3.01 -0.05 -17.32 16 12 C -0.13 -2.73 5.68 29.85 0.17 -2.56 16 13 C 0.00 -0.05 4.41 29.85 0.13 0.08 16 14 C -0.26 -9.14 5.35 -20.14 -0.11 -9.25 16 15 C 0.05 2.06 7.22 43.10 0.31 2.37 16 16 C -0.06 -1.68 10.26 71.24 0.73 -0.95 16 17 N -0.35 -16.68 12.58 -47.38 -0.60 -17.28 16 18 N -0.36 -17.37 3.60 -338.41 -1.22 -18.59 16 19 C 0.28 14.94 6.00 85.64 0.51 15.46 16 20 C -0.55 -31.82 9.39 25.60 0.24 -31.58 16 21 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 22 C 0.02 1.20 5.46 84.66 0.46 1.66 16 23 N -0.92 -52.80 13.29 21.45 0.28 -52.52 16 24 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.08 3.15 6.93 41.41 0.29 3.43 16 29 C -0.08 -2.72 9.72 71.24 0.69 -2.03 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.11 1.21 7.73 -2.39 -0.02 1.19 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.40 1.02 9.12 -74.06 -0.68 0.34 16 38 H 0.41 5.84 8.60 -92.70 -0.80 5.05 16 39 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.81 7.75 -2.39 -0.02 1.80 16 42 H 0.07 1.98 7.21 -2.39 -0.02 1.96 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.06 7.25 -2.39 -0.02 2.04 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.05 2.51 7.04 -2.39 -0.02 2.49 16 48 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 49 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 50 H 0.10 2.68 7.79 -2.38 -0.02 2.66 16 51 H 0.06 2.21 7.07 -2.39 -0.02 2.19 16 Total: -1.00 -77.53 434.37 2.36 -75.17 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.52 Total: 20.42 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 6.43 Total: -13.76 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -3.62 Total: -102.76 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.96 Total: -25.14 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -77.53 2.36 -75.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592923075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.492 kcal (2) G-P(sol) polarization free energy of solvation -77.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds