Wall clock time and date at job start Wed Apr 1 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47294 * 2 1 4 4 C 1.53002 * 109.46821 * 240.00374 * 2 1 3 5 5 C 1.50703 * 109.47470 * 60.00126 * 4 2 1 6 6 H 1.07998 * 119.99796 * 359.97438 * 5 4 2 7 7 C 1.37866 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00346 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47278 * 89.99737 * 9 7 5 11 11 H 1.48496 * 109.47519 * 210.00099 * 9 7 5 12 12 H 1.48498 * 109.46843 * 330.00009 * 9 7 5 13 13 C 1.53001 * 109.47338 * 120.00411 * 2 1 3 14 14 N 1.46894 * 109.46988 * 299.99868 * 13 2 1 15 15 C 1.46900 * 110.99788 * 179.97438 * 14 13 2 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08997 * 109.46834 * 299.99784 * 1 2 3 28 28 H 1.09004 * 109.47159 * 59.99645 * 1 2 3 29 29 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47544 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47601 * 300.00233 * 3 2 1 32 32 H 1.08997 * 109.47003 * 60.00320 * 3 2 1 33 33 H 1.09003 * 109.47172 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47227 * 299.99604 * 4 2 1 35 35 H 0.97001 * 120.00675 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47254 * 179.97438 * 13 2 1 37 37 H 1.08999 * 109.46702 * 59.99738 * 13 2 1 38 38 H 1.00903 * 111.00238 * 303.95382 * 14 13 2 39 39 H 1.08993 * 109.47166 * 60.00560 * 15 14 13 40 40 H 1.08994 * 109.47264 * 299.99859 * 15 14 13 41 41 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 42 42 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 43 43 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 44 44 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 45 45 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 46 46 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 47 47 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 48 48 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 49 49 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 50 50 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 51 51 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 52 52 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 53 53 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 1.4323 0.1383 -4.8058 9 14 2.9461 -1.9994 -3.9036 10 1 2.0885 -3.2108 -3.9491 11 1 3.7380 -1.9062 -5.1563 12 1 3.8665 -2.0879 -2.7416 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0210 -0.6955 3.6702 16 6 1.4925 0.0531 4.8955 17 7 1.9626 -0.6138 6.1171 18 6 1.6780 0.2021 7.3051 19 6 2.3401 -0.4373 8.5303 20 7 1.9033 -1.8389 8.6192 21 16 1.2851 -2.4486 10.0293 22 6 -0.4991 -2.1439 9.9103 23 8 1.5590 -3.8412 9.9588 24 8 1.8626 -1.6388 11.0442 25 6 2.0359 -2.6862 7.4244 26 6 1.3803 -1.9567 6.2411 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1299 -0.7216 -1.2492 34 1 1.6766 -1.7489 -1.2494 35 1 1.6672 -0.1926 -5.6869 36 1 3.1301 -0.7217 1.2489 37 1 1.6767 -1.7490 1.2491 38 1 1.8198 0.9434 2.4402 39 1 3.1108 -0.6956 3.6872 40 1 1.6572 -1.7228 3.6867 41 1 0.4027 0.0537 4.8787 42 1 1.8568 1.0803 4.8787 43 1 0.6004 0.2552 7.4602 44 1 2.0750 1.2068 7.1599 45 1 2.0385 0.0981 9.4305 46 1 3.4242 -0.3976 8.4231 47 1 -0.9923 -2.5177 10.8077 48 1 -0.6794 -1.0730 9.8164 49 1 -0.8979 -2.6576 9.0355 50 1 3.0912 -2.8587 7.2130 51 1 1.5331 -3.6385 7.5933 52 1 0.3069 -1.8736 6.4110 53 1 1.5614 -2.5178 5.3242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270873.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:56 Heat of formation + Delta-G solvation = -91.182182 kcal Electronic energy + Delta-G solvation = -29142.425796 eV Core-core repulsion = 25175.069011 eV Total energy + Delta-G solvation = -3967.356785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.08701 -39.15681 -38.26049 -37.06580 -36.60080 -35.05612 -34.03162 -32.11648 -30.37148 -30.28651 -29.23317 -27.89877 -27.05826 -25.67165 -24.79747 -23.63932 -22.44867 -21.53149 -19.78806 -19.42186 -18.85870 -18.73809 -17.35534 -17.19122 -16.89700 -16.63106 -16.24168 -16.14377 -15.68237 -15.58596 -15.45027 -15.19210 -14.91298 -14.57659 -14.50430 -14.13406 -14.03939 -13.99826 -13.91718 -13.62087 -13.42085 -13.27569 -13.21414 -12.94512 -12.86144 -12.74654 -12.66574 -12.56822 -12.26804 -12.23448 -12.22266 -12.11558 -12.05359 -11.73529 -11.69402 -11.51073 -11.33084 -10.95838 -10.79339 -10.69238 -10.08993 -9.26459 -9.19471 -8.20957 -6.21108 -0.73650 1.36334 1.38016 1.48828 1.60960 2.39993 2.74867 2.92844 3.12239 3.13981 3.52216 3.63726 3.93707 4.03421 4.04511 4.13657 4.17820 4.21924 4.23823 4.34375 4.36153 4.38863 4.44043 4.52635 4.67716 4.76717 4.77162 4.80720 4.85647 4.90556 4.93344 4.98165 5.05544 5.05847 5.06362 5.09717 5.13968 5.19128 5.21120 5.39010 5.47101 5.54850 5.55116 5.63564 5.78158 5.83884 6.04081 6.14248 6.20333 6.43087 6.57845 6.86375 7.41335 8.95077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.001683 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.826700 B =16635.288040 C =17047.139396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.050 4.050 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.045 0.955 7 C -0.001 4.001 8 N -0.954 5.954 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.083 3.917 14 N -0.686 5.686 15 C 0.065 3.935 16 C 0.069 3.931 17 N -0.546 5.546 18 C 0.042 3.958 19 C 0.126 3.874 20 N -1.004 6.004 21 S 2.615 3.385 22 C -0.653 4.653 23 O -0.995 6.995 24 O -0.993 6.993 25 C 0.127 3.873 26 C 0.037 3.963 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.344 0.656 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.143 0.857 50 H 0.072 0.928 51 H 0.101 0.899 52 H 0.049 0.951 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -2.567 33.541 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.173 1.173 13 C -0.046 4.046 14 N -0.318 5.318 15 C -0.065 4.065 16 C -0.059 4.059 17 N -0.272 5.272 18 C -0.087 4.087 19 C 0.000 4.000 20 N -0.842 5.842 21 S 2.712 3.288 22 C -0.807 4.807 23 O -0.985 6.985 24 O -0.983 6.983 25 C 0.001 3.999 26 C -0.092 4.092 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.163 0.837 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.161 0.839 48 H 0.164 0.836 49 H 0.162 0.838 50 H 0.090 0.910 51 H 0.119 0.881 52 H 0.067 0.933 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.971 -3.368 34.055 34.278 hybrid contribution 0.002 -0.001 -1.318 1.318 sum -1.969 -3.370 32.737 32.969 Atomic orbital electron populations 1.21511 0.94585 1.00342 1.00146 1.20363 0.96104 0.95458 0.93069 1.21695 0.99744 0.95879 1.00861 1.19608 0.95595 0.95400 0.93575 1.21435 1.29990 1.12151 0.90470 0.93686 1.25935 0.97661 1.00228 0.95836 1.70063 1.48295 1.42845 0.98418 0.85798 0.79711 0.80059 0.77889 1.19623 1.21541 1.17319 1.21816 0.96200 0.97650 0.88963 1.60425 1.63714 1.06736 1.00973 1.21887 0.97367 0.98496 0.88709 1.21896 0.98064 0.97907 0.88030 1.61748 1.59998 1.03084 1.02352 1.22540 0.99350 0.97458 0.89337 1.21593 1.00406 0.79442 0.98537 1.57695 1.78070 1.20177 1.28226 1.04554 0.78937 0.72789 0.72480 1.30394 1.23327 1.13761 1.13182 1.93563 1.85060 1.33781 1.86134 1.93560 1.76755 1.70574 1.57422 1.21643 1.02371 0.92777 0.83083 1.22671 0.97043 0.90374 0.99123 0.91321 0.95450 0.94391 0.93826 0.94595 0.91276 0.96987 0.97078 0.92935 0.95744 0.91708 0.83663 0.95225 0.91266 0.93984 0.90216 0.93243 0.88496 0.87734 0.90927 0.83882 0.83552 0.83820 0.90963 0.88086 0.93275 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.94 8.06 71.98 0.58 -3.36 16 2 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16 3 C -0.12 -4.29 7.89 71.98 0.57 -3.73 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.08 16 5 C -0.50 -27.98 8.20 25.60 0.21 -27.77 16 6 H 0.04 2.75 5.92 -2.91 -0.02 2.73 16 7 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 8 N -0.95 -59.78 13.96 21.44 0.30 -59.48 16 9 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 C 0.08 2.39 4.65 86.30 0.40 2.79 16 14 N -0.69 -15.46 5.71 -513.90 -2.94 -18.40 16 15 C 0.06 1.18 5.62 86.31 0.48 1.66 16 16 C 0.07 0.96 5.22 86.31 0.45 1.41 16 17 N -0.55 -6.80 4.63 -894.30 -4.14 -10.94 16 18 C 0.04 0.37 5.62 86.38 0.49 0.86 16 19 C 0.13 1.22 6.46 86.35 0.56 1.78 16 20 N -1.00 -11.02 3.25 -511.34 -1.66 -12.69 16 21 S 2.61 31.18 6.06 -56.49 -0.34 30.84 16 22 C -0.65 -1.99 10.99 113.37 1.25 -0.75 16 23 O -0.99 -19.39 16.78 -127.65 -2.14 -21.53 16 24 O -0.99 -18.58 16.79 -127.65 -2.14 -20.73 16 25 C 0.13 1.43 6.50 86.50 0.56 1.99 16 26 C 0.04 0.41 5.48 86.54 0.47 0.89 16 27 H 0.07 2.13 7.60 -2.39 -0.02 2.12 16 28 H 0.03 1.15 6.62 -2.38 -0.02 1.13 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 1.47 6.62 -2.39 -0.02 1.45 16 32 H 0.07 1.90 6.57 -2.39 -0.02 1.88 16 33 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 34 H 0.01 0.50 7.57 -2.38 -0.02 0.48 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.34 7.28 6.77 -89.69 -0.61 6.68 16 39 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 1.27 6.40 -2.39 -0.02 1.26 16 41 H 0.04 0.62 8.12 -2.39 -0.02 0.60 16 42 H 0.08 1.04 7.97 -2.38 -0.02 1.02 16 43 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.10 0.70 7.99 -2.39 -0.02 0.69 16 45 H 0.10 0.76 7.19 -2.39 -0.02 0.74 16 46 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.10 0.97 7.18 -2.39 -0.02 0.95 16 52 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 53 H 0.09 1.05 6.16 -2.38 -0.01 1.03 16 Total: -1.00 -76.22 411.19 -4.42 -80.65 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.21 Total: 11.58 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 6.54 Total: -25.72 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -8.44 Total: -101.51 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -4.29 Total: -42.26 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.34 Total: 30.84 kcal Total: -76.22 -4.42 -80.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270873.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.536 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds