Wall clock time and date at job start Wed Apr 1 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 C 1.53007 * 109.46677 * 119.99986 * 2 1 3 5 5 N 1.46500 * 109.46609 * 174.10511 * 4 2 1 6 6 C 1.46497 * 120.00412 * 276.68373 * 5 4 2 7 7 C 1.50703 * 109.47168 * 270.00308 * 6 5 4 8 8 H 1.07997 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00198 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99774 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47392 * 89.99954 * 11 9 7 13 13 H 1.48504 * 109.46839 * 210.00040 * 11 9 7 14 14 H 1.48504 * 109.47151 * 329.99515 * 11 9 7 15 15 C 1.34780 * 119.99663 * 96.69103 * 5 4 2 16 16 O 1.21278 * 119.99713 * 185.40365 * 15 5 4 17 17 C 1.50705 * 120.00167 * 5.39892 * 15 5 4 18 18 C 1.52997 * 109.46970 * 174.69748 * 17 15 5 19 19 C 1.53007 * 109.46908 * 180.02562 * 18 17 15 20 20 N 1.46495 * 109.46810 * 180.02562 * 19 18 17 21 21 C 1.34780 * 119.99439 * 180.27867 * 20 19 18 22 22 O 1.21552 * 120.00236 * 359.71689 * 21 20 19 23 23 C 1.47844 * 119.99593 * 179.72210 * 21 20 19 24 24 C 1.40030 * 120.55658 * 179.71719 * 23 21 20 25 25 C 1.38354 * 118.28384 * 179.73306 * 24 23 21 26 26 C 1.38346 * 119.30728 * 0.56216 * 25 24 23 27 27 N 1.31924 * 121.07865 * 359.70126 * 26 25 24 28 28 C 1.31697 * 121.88310 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47193 * 300.00503 * 1 2 3 30 30 H 1.09002 * 109.46549 * 59.99771 * 1 2 3 31 31 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47193 * 239.99496 * 2 1 3 33 33 H 1.08998 * 109.46738 * 184.70305 * 3 2 1 34 34 H 1.08998 * 109.47135 * 304.70458 * 3 2 1 35 35 H 1.09004 * 109.47335 * 64.70596 * 3 2 1 36 36 H 1.08995 * 109.46991 * 54.11056 * 4 2 1 37 37 H 1.08997 * 109.47019 * 294.10313 * 4 2 1 38 38 H 1.08996 * 109.47052 * 30.00406 * 6 5 4 39 39 H 1.08995 * 109.47061 * 150.00358 * 6 5 4 40 40 H 0.97000 * 120.00023 * 179.97438 * 10 9 7 41 41 H 1.08998 * 109.46812 * 54.69620 * 17 15 5 42 42 H 1.09000 * 109.46961 * 294.69965 * 17 15 5 43 43 H 1.08998 * 109.47457 * 60.00268 * 18 17 15 44 44 H 1.09000 * 109.47455 * 299.99914 * 18 17 15 45 45 H 1.08998 * 109.46960 * 59.99819 * 19 18 17 46 46 H 1.09008 * 109.46697 * 299.99854 * 19 18 17 47 47 H 0.96995 * 120.00410 * 359.97438 * 20 19 18 48 48 H 1.07995 * 120.85198 * 0.02562 * 24 23 21 49 49 H 1.08009 * 120.34269 * 180.26163 * 25 24 23 50 50 H 1.07998 * 119.46186 * 179.72014 * 26 25 24 51 51 H 1.07994 * 119.72218 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4980 -0.8454 1.1805 6 6 4.1049 -1.9450 0.4264 7 6 4.2993 -3.1307 1.3360 8 1 4.0003 -3.0713 2.3721 9 6 4.8579 -4.2918 0.8453 10 7 5.0271 -5.3268 1.6389 11 14 5.3745 -4.3948 -0.9470 12 1 6.7857 -3.9528 -1.0816 13 1 5.2478 -5.7972 -1.4188 14 1 4.5004 -3.5165 -1.7654 15 6 4.2812 0.0522 1.8111 16 8 5.4854 0.0080 1.6743 17 6 3.6605 1.1106 2.6861 18 6 4.7646 1.9092 3.3817 19 6 4.1344 2.9834 4.2705 20 7 5.1917 3.7484 4.9361 21 6 4.8701 4.7504 5.7783 22 8 3.7030 5.0225 5.9816 23 6 5.9370 5.5184 6.4547 24 6 5.6164 6.5655 7.3274 25 6 6.6518 7.2493 7.9394 26 6 7.9584 6.8880 7.6633 27 7 8.2308 5.9004 6.8321 28 6 7.2804 5.2157 6.2302 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1268 1.4435 -0.0843 34 1 1.6095 1.9800 -0.8448 35 1 1.7472 1.9314 0.9292 36 1 1.5930 -1.7139 1.3036 37 1 1.7653 -0.1501 2.1361 38 1 3.4504 -2.2240 -0.3993 39 1 5.0703 -1.6266 0.0332 40 1 5.4198 -6.1437 1.2936 41 1 3.0273 0.6366 3.4360 42 1 3.0580 1.7812 2.0733 43 1 5.3978 2.3832 2.6317 44 1 5.3671 1.2386 3.9945 45 1 3.5015 2.5090 5.0205 46 1 3.5317 3.6541 3.6580 47 1 6.1230 3.5311 4.7741 48 1 4.5873 6.8293 7.5214 49 1 6.4423 8.0598 8.6219 50 1 8.7687 7.4230 8.1361 51 1 7.5430 4.4135 5.5566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772081417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:06 Heat of formation + Delta-G solvation = -74.949456 kcal Electronic energy + Delta-G solvation = -29827.788679 eV Core-core repulsion = 25725.691847 eV Total energy + Delta-G solvation = -4102.096832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63265 -40.97879 -40.03807 -37.79332 -36.79579 -35.46924 -34.17563 -34.02902 -33.52363 -32.32045 -30.43016 -28.39421 -27.75648 -26.86180 -25.51888 -24.62057 -24.15171 -22.63876 -21.80338 -21.38826 -19.65605 -19.15954 -19.06872 -18.11615 -17.85314 -17.35782 -17.18257 -17.08953 -16.47436 -16.37588 -16.02590 -15.77773 -15.52337 -15.33455 -14.82525 -14.68676 -14.58186 -14.41659 -14.29999 -14.12414 -13.93830 -13.65572 -13.42307 -13.24177 -13.15236 -12.89555 -12.86227 -12.66922 -12.50945 -12.39110 -12.25931 -11.92360 -11.80992 -11.74906 -11.69382 -11.48397 -11.37339 -11.00112 -10.84065 -10.61711 -10.49794 -10.36869 -10.08720 -9.34173 -8.35053 -6.39504 -0.41158 0.18543 1.30817 1.34326 1.42763 1.75751 1.82431 1.97531 2.29214 2.39202 2.82249 2.99271 3.28601 3.57928 3.67738 3.78906 3.90340 3.93189 3.99594 4.00268 4.01029 4.06211 4.20457 4.35386 4.43010 4.47753 4.52311 4.63957 4.64200 4.70244 4.73159 4.79981 4.87323 4.94364 4.98856 4.99586 5.08803 5.08996 5.09434 5.14098 5.19504 5.30889 5.33561 5.43674 5.47255 5.51869 5.56503 5.68040 6.23831 6.37186 6.61902 6.75130 6.82370 7.03897 7.21398 7.45126 8.81630 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.002065 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.997337 B =13553.356495 C =15123.912140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.108 3.892 5 N -0.598 5.598 6 C 0.226 3.774 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.011 3.989 10 N -0.944 5.944 11 Si 0.945 3.055 12 H -0.276 1.276 13 H -0.275 1.275 14 H -0.241 1.241 15 C 0.502 3.498 16 O -0.596 6.596 17 C -0.135 4.135 18 C -0.107 4.107 19 C 0.127 3.873 20 N -0.715 5.715 21 C 0.563 3.437 22 O -0.573 6.573 23 C -0.203 4.203 24 C -0.028 4.028 25 C -0.169 4.169 26 C 0.118 3.882 27 N -0.513 5.513 28 C 0.131 3.869 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.017 0.983 40 H 0.268 0.732 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.412 0.588 48 H 0.149 0.851 49 H 0.177 0.823 50 H 0.192 0.808 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 26.759 6.829 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.203 4.203 4 C -0.014 4.014 5 N -0.328 5.328 6 C 0.103 3.897 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.187 4.187 10 N -0.584 5.584 11 Si 0.768 3.232 12 H -0.201 1.201 13 H -0.200 1.200 14 H -0.165 1.165 15 C 0.291 3.709 16 O -0.477 6.477 17 C -0.174 4.174 18 C -0.145 4.145 19 C 0.004 3.996 20 N -0.366 5.366 21 C 0.350 3.650 22 O -0.453 6.453 23 C -0.208 4.208 24 C -0.055 4.055 25 C -0.188 4.188 26 C -0.038 4.038 27 N -0.222 5.222 28 C -0.028 4.028 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.249 0.751 48 H 0.166 0.834 49 H 0.194 0.806 50 H 0.208 0.792 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.421 26.491 6.711 27.541 hybrid contribution 0.135 -1.059 -0.524 1.189 sum -3.286 25.433 6.186 26.380 Atomic orbital electron populations 1.21725 0.92512 1.02190 1.03087 1.21511 0.97412 0.96815 0.97479 1.21962 0.99904 0.95276 1.03194 1.21897 0.78359 1.01565 0.99623 1.47948 1.07557 1.26427 1.50887 1.19227 0.93891 0.84690 0.91842 1.21559 1.41075 0.97562 0.96986 0.95076 1.25820 0.94995 0.95015 1.02845 1.70044 1.45828 1.04488 1.38037 0.85758 0.79483 0.78251 0.79731 1.20148 1.20012 1.16471 1.21282 0.86639 0.82731 0.80213 1.90622 1.16939 1.75199 1.64972 1.21818 0.99758 0.96471 0.99392 1.21401 0.97746 0.96629 0.98774 1.21352 0.89742 0.92876 0.95613 1.45890 1.11528 1.33834 1.45392 1.18287 0.88098 0.79879 0.78701 1.90759 1.20911 1.68974 1.64684 1.20973 0.94763 1.01330 1.03770 1.21973 1.01778 0.90961 0.90780 1.22531 0.92685 1.02078 1.01540 1.23642 0.97429 0.91356 0.91374 1.67778 1.37353 1.07893 1.09140 1.23229 0.87273 0.96885 0.95365 0.90890 0.91472 0.92891 0.92856 0.94809 0.91299 0.90324 0.91644 0.87891 0.94012 0.96462 0.92303 0.87346 0.85516 0.90652 0.91993 0.91037 0.90186 0.75084 0.83364 0.80573 0.79150 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 71.98 0.66 -1.71 16 2 C -0.11 -2.61 3.11 -10.79 -0.03 -2.65 16 3 C -0.15 -2.90 7.59 71.98 0.55 -2.35 16 4 C 0.11 3.11 4.89 86.38 0.42 3.53 16 5 N -0.60 -23.45 2.26 -826.16 -1.87 -25.32 16 6 C 0.23 10.98 4.29 85.63 0.37 11.35 16 7 C -0.53 -31.22 9.94 25.60 0.25 -30.97 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 9 C 0.01 0.67 5.47 84.65 0.46 1.13 16 10 N -0.94 -59.60 13.96 21.45 0.30 -59.31 16 11 Si 0.94 44.74 27.47 68.60 1.88 46.63 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 15 C 0.50 19.07 6.45 87.66 0.57 19.63 16 16 O -0.60 -28.34 15.54 -3.02 -0.05 -28.38 16 17 C -0.13 -3.28 4.05 29.85 0.12 -3.16 16 18 C -0.11 -2.42 4.63 30.60 0.14 -2.27 16 19 C 0.13 2.40 5.67 86.38 0.49 2.89 16 20 N -0.71 -13.04 5.51 -465.96 -2.57 -15.61 16 21 C 0.56 12.17 7.78 86.79 0.68 12.84 16 22 O -0.57 -16.08 16.42 -3.88 -0.06 -16.15 16 23 C -0.20 -3.62 5.89 -19.99 -0.12 -3.74 16 24 C -0.03 -0.42 9.72 22.73 0.22 -0.20 16 25 C -0.17 -1.61 10.10 22.32 0.23 -1.39 16 26 C 0.12 1.32 11.17 84.70 0.95 2.27 16 27 N -0.51 -8.68 10.35 -194.77 -2.01 -10.69 16 28 C 0.13 2.13 10.71 85.02 0.91 3.04 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.47 8.01 -2.39 -0.02 1.45 16 33 H 0.03 0.83 6.87 -2.39 -0.02 0.81 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.19 6.49 -2.38 -0.02 1.18 16 36 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 37 H 0.10 2.29 6.10 -2.39 -0.01 2.28 16 38 H 0.04 1.91 6.99 -2.39 -0.02 1.89 16 39 H 0.02 0.91 6.78 -2.39 -0.02 0.89 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.11 2.32 7.37 -2.39 -0.02 2.30 16 42 H 0.13 2.35 4.80 -2.39 -0.01 2.33 16 43 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.41 5.90 6.54 -92.71 -0.61 5.29 16 48 H 0.15 2.11 7.74 -2.91 -0.02 2.09 16 49 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 50 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 51 H 0.17 2.10 6.42 -2.91 -0.02 2.08 16 Total: -1.00 -84.19 412.66 2.76 -81.43 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.27 Total: 19.16 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.86 Total: 8.24 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -6.15 Total: -110.92 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.11 Total: -44.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -84.19 2.76 -81.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772081417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.479 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds