Wall clock time and date at job start Wed Apr 1 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47418 * 2 1 4 4 C 1.53002 * 109.46993 * 240.00731 * 2 1 3 5 5 C 1.50697 * 109.47626 * 59.99587 * 4 2 1 6 6 H 1.07999 * 119.99750 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00246 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99963 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47217 * 89.99999 * 9 7 5 11 11 H 1.48503 * 109.46922 * 210.00295 * 9 7 5 12 12 H 1.48502 * 109.47214 * 329.99898 * 9 7 5 13 13 C 1.52998 * 109.47572 * 120.00405 * 2 1 3 14 14 N 1.46504 * 109.46856 * 300.00070 * 13 2 1 15 15 C 1.34774 * 119.99678 * 179.97438 * 14 13 2 16 16 O 1.21595 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.47544 * 119.99675 * 179.97438 * 15 14 13 18 18 C 1.40355 * 120.47126 * 180.02562 * 17 15 14 19 19 C 1.36854 * 118.48697 * 179.97438 * 18 17 15 20 20 C 1.39393 * 119.38536 * 359.97438 * 19 18 17 21 21 N 1.38453 * 119.54259 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99971 * 303.65324 * 21 20 19 23 23 C 1.53096 * 109.25928 * 177.60435 * 22 21 20 24 24 O 1.43020 * 109.25421 * 56.85193 * 23 22 21 25 25 C 1.43009 * 113.74136 * 301.33103 * 24 23 22 26 26 C 1.47014 * 111.00324 * 180.02562 * 21 20 19 27 27 N 1.32605 * 120.92012 * 0.02562 * 20 19 18 28 28 C 1.31678 * 121.63432 * 0.02562 * 27 20 19 29 29 H 1.09004 * 109.46688 * 299.99484 * 1 2 3 30 30 H 1.09000 * 109.47307 * 59.99196 * 1 2 3 31 31 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47382 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47085 * 300.00945 * 3 2 1 34 34 H 1.08999 * 109.46544 * 59.99871 * 3 2 1 35 35 H 1.09005 * 109.47390 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46725 * 299.99961 * 4 2 1 37 37 H 0.96999 * 120.00110 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47592 * 179.97438 * 13 2 1 39 39 H 1.09004 * 109.46861 * 59.99601 * 13 2 1 40 40 H 0.97001 * 119.99980 * 359.97438 * 14 13 2 41 41 H 1.07994 * 120.75285 * 359.70639 * 18 17 15 42 42 H 1.07999 * 120.30666 * 180.02562 * 19 18 17 43 43 H 1.08992 * 109.50966 * 297.54623 * 22 21 20 44 44 H 1.09004 * 109.50367 * 57.67697 * 22 21 20 45 45 H 1.09004 * 109.51242 * 296.92221 * 23 22 21 46 46 H 1.08994 * 109.54376 * 176.80693 * 23 22 21 47 47 H 1.09003 * 109.50478 * 298.73468 * 25 24 23 48 48 H 1.08996 * 109.54335 * 178.63081 * 25 24 23 49 49 H 1.09010 * 109.50321 * 302.32508 * 26 21 20 50 50 H 1.08997 * 109.50703 * 62.40696 * 26 21 20 51 51 H 1.08007 * 119.73690 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 2.6255 -1.5517 -3.8528 9 14 1.2481 0.3991 -5.2572 10 1 2.2270 1.4401 -5.6615 11 1 1.0822 -0.5799 -6.3614 12 1 -0.0596 1.0376 -4.9612 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4916 3.6694 16 8 2.5762 -1.4802 3.7809 17 6 1.3857 0.2042 4.8741 18 6 1.7188 -0.2668 6.1537 19 6 1.2414 0.4101 7.2431 20 6 0.4454 1.5385 7.0525 21 7 -0.0388 2.2260 8.1523 22 6 -0.8082 1.3356 9.0335 23 6 -1.2730 2.1203 10.2631 24 8 -2.0356 3.2534 9.8390 25 6 -1.3168 4.1423 8.9798 26 6 -0.8524 3.3781 7.7372 27 7 0.1455 1.9625 5.8324 28 6 0.5833 1.3400 4.7578 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7215 -1.2492 36 1 1.6766 -1.7488 -1.2494 37 1 2.8593 -1.8835 -4.7338 38 1 3.1301 -0.7217 1.2489 39 1 1.6767 -1.7490 1.2491 40 1 0.9944 0.7581 2.3564 41 1 2.3341 -1.1458 6.2757 42 1 1.4799 0.0737 8.2413 43 1 -1.6760 0.9530 8.4964 44 1 -0.1789 0.5035 9.3493 45 1 -0.4048 2.4573 10.8295 46 1 -1.8915 1.4799 10.8919 47 1 -0.4498 4.5381 9.5088 48 1 -1.9665 4.9644 8.6798 49 1 -0.2553 4.0370 7.1067 50 1 -1.7205 3.0282 7.1787 51 1 0.3205 1.7123 3.7785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805278512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:11 Heat of formation + Delta-G solvation = -41.178076 kcal Electronic energy + Delta-G solvation = -30145.552011 eV Core-core repulsion = 26044.919616 eV Total energy + Delta-G solvation = -4100.632395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38777 -39.98984 -38.96647 -37.15144 -36.14884 -33.79592 -33.02721 -32.21887 -31.67847 -30.97530 -27.93426 -27.09083 -26.55121 -26.08300 -25.18896 -23.82407 -23.26272 -22.64496 -21.12521 -20.47261 -18.85624 -18.23480 -17.39429 -17.14418 -16.51474 -16.29564 -15.96372 -15.68603 -15.47154 -15.42366 -15.14179 -14.87097 -14.81366 -14.49467 -13.99856 -13.88248 -13.49354 -13.36800 -13.12352 -12.92281 -12.85872 -12.74897 -12.19675 -12.08700 -12.07536 -11.93728 -11.24422 -11.19778 -11.04232 -10.87528 -10.68599 -10.66029 -10.45247 -10.30253 -10.27956 -10.24692 -10.01658 -9.91425 -9.71722 -9.21257 -8.95453 -8.87767 -8.54732 -8.37747 -6.01751 -4.03148 0.36261 0.93143 2.64702 2.98066 3.28407 3.29784 3.32402 3.37009 3.38877 3.62588 3.88074 4.26010 4.38050 4.43539 4.48900 4.55564 4.57557 4.64113 4.70272 4.78799 4.81698 4.98963 5.10592 5.20251 5.22849 5.33715 5.36706 5.43484 5.46646 5.55622 5.58143 5.70353 5.80202 5.95700 6.07981 6.12113 6.17688 6.24679 6.34688 6.48431 6.56854 6.58741 6.59538 6.69977 7.02137 7.04098 7.08655 7.48292 7.60663 7.63437 7.73462 7.96678 8.28357 8.38721 9.01537 9.60074 11.09623 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.001835 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.723009 B =15259.317984 C =16189.911069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.558 3.442 16 O -0.541 6.541 17 C -0.207 4.207 18 C 0.004 3.996 19 C -0.192 4.192 20 C 0.328 3.672 21 N -0.476 5.476 22 C 0.020 3.980 23 C 0.064 3.936 24 O -0.384 6.384 25 C 0.060 3.940 26 C 0.028 3.972 27 N -0.521 5.521 28 C 0.163 3.837 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.397 0.603 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.099 0.901 50 H 0.063 0.937 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 8.614 28.422 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.344 3.656 16 O -0.420 6.420 17 C -0.214 4.214 18 C -0.023 4.023 19 C -0.214 4.214 20 C 0.096 3.904 21 N -0.194 5.194 22 C -0.106 4.106 23 C -0.013 4.013 24 O -0.302 6.302 25 C -0.018 4.018 26 C -0.099 4.099 27 N -0.235 5.235 28 C 0.004 3.996 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.079 0.921 48 H 0.123 0.877 49 H 0.117 0.883 50 H 0.082 0.918 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.911 8.765 28.637 30.735 hybrid contribution -0.178 -0.222 -1.507 1.534 sum -7.089 8.542 27.130 29.313 Atomic orbital electron populations 1.21773 0.95231 1.01252 1.00253 1.20923 0.95504 0.95896 0.95040 1.21774 1.00643 0.95842 1.00254 1.19090 0.96385 0.95237 0.89406 1.21173 1.31257 1.12064 0.90496 0.92239 1.25018 0.95333 0.95075 0.99112 1.69960 1.36962 1.22937 1.23458 0.86642 0.79175 0.79405 0.83038 1.20778 1.21347 1.19947 1.21691 0.99101 0.96091 0.82584 1.46134 1.52880 1.31804 1.05788 1.17920 0.80581 0.84070 0.83029 1.90785 1.38264 1.26166 1.86782 1.20982 1.05204 0.99993 0.95174 1.21322 0.93242 0.97463 0.90232 1.21253 1.02247 0.97317 1.00591 1.19939 0.92483 0.89631 0.88397 1.59139 1.36836 1.08995 1.14392 1.23016 0.97198 0.95684 0.94653 1.22704 0.96538 0.87710 0.94395 1.88023 1.39902 1.35538 1.66735 1.22804 0.97030 0.92220 0.89697 1.22725 0.97206 0.92246 0.97675 1.67650 1.24533 1.33258 0.98017 1.22795 0.90220 0.89661 0.96896 0.95351 0.91302 0.93270 0.93256 0.91309 0.95342 0.96299 0.96295 0.93028 0.91512 0.91529 0.76703 0.83241 0.84048 0.92306 0.88459 0.91813 0.87658 0.92095 0.87729 0.88280 0.91837 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.40 7.65 -34.44 -0.26 -13.66 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.13 2.20 4.56 -4.04 -0.02 2.18 16 14 N -0.71 -10.12 4.91 -61.34 -0.30 -10.42 16 15 C 0.56 8.29 7.77 -12.47 -0.10 8.19 16 16 O -0.54 -9.95 16.41 5.28 0.09 -9.87 16 17 C -0.21 -2.47 5.89 -104.82 -0.62 -3.09 16 18 C 0.00 0.04 9.65 -39.29 -0.38 -0.34 16 19 C -0.19 -1.70 9.14 -39.65 -0.36 -2.06 16 20 C 0.33 3.21 6.39 -155.28 -0.99 2.22 16 21 N -0.48 -3.90 4.74 -172.93 -0.82 -4.72 16 22 C 0.02 0.13 5.39 -3.71 -0.02 0.11 16 23 C 0.06 0.34 7.01 37.21 0.26 0.60 16 24 O -0.38 -2.98 10.83 -35.23 -0.38 -3.36 16 25 C 0.06 0.38 7.01 37.20 0.26 0.64 16 26 C 0.03 0.22 4.81 -3.72 -0.02 0.20 16 27 N -0.52 -5.63 8.67 -12.14 -0.11 -5.74 16 28 C 0.16 1.74 10.71 -17.13 -0.18 1.56 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.40 4.70 4.21 -40.82 -0.17 4.53 16 41 H 0.15 1.50 7.73 -52.49 -0.41 1.09 16 42 H 0.14 0.89 7.16 -52.49 -0.38 0.52 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.44 6.80 -51.93 -0.35 0.08 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.81 7.85 -51.92 -0.41 0.40 16 50 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 51 H 0.16 1.40 6.41 -52.48 -0.34 1.06 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -32.36 400.49 -9.84 -42.21 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.95 Total: 1.72 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.13 Total: -6.44 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.49 Total: -46.32 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.29 Total: -13.22 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.36 -9.84 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805278512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.031 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds