Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47418 * 2 1 4 4 C 1.53002 * 109.46993 * 240.00731 * 2 1 3 5 5 C 1.50697 * 109.47626 * 59.99587 * 4 2 1 6 6 H 1.07999 * 119.99750 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00246 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99963 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47217 * 89.99999 * 9 7 5 11 11 H 1.48503 * 109.46922 * 210.00295 * 9 7 5 12 12 H 1.48502 * 109.47214 * 329.99898 * 9 7 5 13 13 C 1.52998 * 109.47572 * 120.00405 * 2 1 3 14 14 N 1.46504 * 109.46856 * 300.00070 * 13 2 1 15 15 C 1.34774 * 119.99678 * 179.97438 * 14 13 2 16 16 O 1.21595 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.47544 * 119.99675 * 179.97438 * 15 14 13 18 18 C 1.40355 * 120.47126 * 180.02562 * 17 15 14 19 19 C 1.36854 * 118.48697 * 179.97438 * 18 17 15 20 20 C 1.39393 * 119.38536 * 359.97438 * 19 18 17 21 21 N 1.38453 * 119.54259 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99971 * 303.65324 * 21 20 19 23 23 C 1.53096 * 109.25928 * 177.60435 * 22 21 20 24 24 O 1.43020 * 109.25421 * 56.85193 * 23 22 21 25 25 C 1.43009 * 113.74136 * 301.33103 * 24 23 22 26 26 C 1.47014 * 111.00324 * 180.02562 * 21 20 19 27 27 N 1.32605 * 120.92012 * 0.02562 * 20 19 18 28 28 C 1.31678 * 121.63432 * 0.02562 * 27 20 19 29 29 H 1.09004 * 109.46688 * 299.99484 * 1 2 3 30 30 H 1.09000 * 109.47307 * 59.99196 * 1 2 3 31 31 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47382 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47085 * 300.00945 * 3 2 1 34 34 H 1.08999 * 109.46544 * 59.99871 * 3 2 1 35 35 H 1.09005 * 109.47390 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46725 * 299.99961 * 4 2 1 37 37 H 0.96999 * 120.00110 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47592 * 179.97438 * 13 2 1 39 39 H 1.09004 * 109.46861 * 59.99601 * 13 2 1 40 40 H 0.97001 * 119.99980 * 359.97438 * 14 13 2 41 41 H 1.07994 * 120.75285 * 359.70639 * 18 17 15 42 42 H 1.07999 * 120.30666 * 180.02562 * 19 18 17 43 43 H 1.08992 * 109.50966 * 297.54623 * 22 21 20 44 44 H 1.09004 * 109.50367 * 57.67697 * 22 21 20 45 45 H 1.09004 * 109.51242 * 296.92221 * 23 22 21 46 46 H 1.08994 * 109.54376 * 176.80693 * 23 22 21 47 47 H 1.09003 * 109.50478 * 298.73468 * 25 24 23 48 48 H 1.08996 * 109.54335 * 178.63081 * 25 24 23 49 49 H 1.09010 * 109.50321 * 302.32508 * 26 21 20 50 50 H 1.08997 * 109.50703 * 62.40696 * 26 21 20 51 51 H 1.08007 * 119.73690 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 2.6255 -1.5517 -3.8528 9 14 1.2481 0.3991 -5.2572 10 1 2.2270 1.4401 -5.6615 11 1 1.0822 -0.5799 -6.3614 12 1 -0.0596 1.0376 -4.9612 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4916 3.6694 16 8 2.5762 -1.4802 3.7809 17 6 1.3857 0.2042 4.8741 18 6 1.7188 -0.2668 6.1537 19 6 1.2414 0.4101 7.2431 20 6 0.4454 1.5385 7.0525 21 7 -0.0388 2.2260 8.1523 22 6 -0.8082 1.3356 9.0335 23 6 -1.2730 2.1203 10.2631 24 8 -2.0356 3.2534 9.8390 25 6 -1.3168 4.1423 8.9798 26 6 -0.8524 3.3781 7.7372 27 7 0.1455 1.9625 5.8324 28 6 0.5833 1.3400 4.7578 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7215 -1.2492 36 1 1.6766 -1.7488 -1.2494 37 1 2.8593 -1.8835 -4.7338 38 1 3.1301 -0.7217 1.2489 39 1 1.6767 -1.7490 1.2491 40 1 0.9944 0.7581 2.3564 41 1 2.3341 -1.1458 6.2757 42 1 1.4799 0.0737 8.2413 43 1 -1.6760 0.9530 8.4964 44 1 -0.1789 0.5035 9.3493 45 1 -0.4048 2.4573 10.8295 46 1 -1.8915 1.4799 10.8919 47 1 -0.4498 4.5381 9.5088 48 1 -1.9665 4.9644 8.6798 49 1 -0.2553 4.0370 7.1067 50 1 -1.7205 3.0282 7.1787 51 1 0.3205 1.7123 3.7785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805278512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = -62.413821 kcal Electronic energy + Delta-G solvation = -30146.472862 eV Core-core repulsion = 26044.919616 eV Total energy + Delta-G solvation = -4101.553246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14202 -40.95485 -39.82072 -38.61566 -36.81468 -35.33594 -34.04018 -33.79409 -32.21617 -31.81514 -29.18045 -28.54232 -27.96274 -27.32291 -25.79650 -25.15545 -24.19137 -23.78079 -21.89482 -21.43019 -20.14423 -19.10846 -18.46480 -18.36552 -17.94619 -17.07422 -16.69907 -16.60520 -16.48170 -16.34981 -16.10898 -15.99028 -15.75504 -15.47780 -15.19632 -15.04787 -14.67213 -14.46003 -14.33536 -14.14453 -13.94281 -13.77056 -13.71024 -13.32328 -12.87491 -12.72490 -12.60173 -12.58721 -12.40003 -12.33417 -12.22966 -11.97955 -11.72214 -11.54058 -11.48309 -11.28153 -11.06034 -10.97303 -10.85373 -10.62027 -10.55683 -10.50691 -10.15424 -9.30240 -8.13424 -6.20956 -0.47599 0.17024 1.43087 1.43336 1.53619 1.70598 2.09852 2.25722 2.45182 2.75176 2.89802 3.18185 3.21101 3.65445 3.73863 3.80440 3.81733 3.92968 3.98083 4.02678 4.08065 4.10671 4.20039 4.21910 4.27686 4.47649 4.55566 4.67482 4.70669 4.71680 4.71778 4.78077 4.79489 4.90380 4.94681 4.95768 5.05465 5.09289 5.12791 5.23652 5.35023 5.45050 5.46089 5.51221 5.53664 5.57454 5.80679 5.88784 5.90639 6.12356 6.30707 6.48165 6.72156 6.94229 7.13629 7.46646 8.98936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.001835 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.723009 B =15259.317984 C =16189.911069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.124 4.124 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.259 1.259 13 C 0.141 3.859 14 N -0.703 5.703 15 C 0.561 3.439 16 O -0.583 6.583 17 C -0.224 4.224 18 C 0.000 4.000 19 C -0.184 4.184 20 C 0.325 3.675 21 N -0.477 5.477 22 C 0.019 3.981 23 C 0.062 3.938 24 O -0.403 6.403 25 C 0.062 3.938 26 C 0.031 3.969 27 N -0.534 5.534 28 C 0.169 3.831 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.069 0.931 35 H -0.013 1.013 36 H -0.013 1.013 37 H 0.259 0.741 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.411 0.589 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.049 0.951 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.067 0.933 48 H 0.117 0.883 49 H 0.094 0.906 50 H 0.050 0.950 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 10.839 30.538 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.017 3.983 14 N -0.355 5.355 15 C 0.349 3.651 16 O -0.465 6.465 17 C -0.231 4.231 18 C -0.027 4.027 19 C -0.206 4.206 20 C 0.093 3.907 21 N -0.194 5.194 22 C -0.106 4.106 23 C -0.015 4.015 24 O -0.322 6.322 25 C -0.014 4.014 26 C -0.096 4.096 27 N -0.248 5.248 28 C 0.010 3.990 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.005 0.995 36 H 0.005 0.995 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.168 0.832 42 H 0.187 0.813 43 H 0.067 0.933 44 H 0.135 0.865 45 H 0.090 0.910 46 H 0.143 0.857 47 H 0.085 0.915 48 H 0.135 0.865 49 H 0.112 0.888 50 H 0.068 0.932 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.547 11.035 30.782 33.799 hybrid contribution 0.320 -0.910 -2.021 2.240 sum -8.227 10.125 28.761 31.581 Atomic orbital electron populations 1.21715 0.93566 1.01088 1.01690 1.20719 0.96721 0.96329 0.92770 1.21718 1.00038 0.94613 1.01716 1.18971 0.94338 0.94237 0.92230 1.21594 1.30395 1.12038 0.91043 0.90881 1.25952 0.95751 0.95888 1.02732 1.70118 1.38841 1.24893 1.24040 0.85542 0.79168 0.78085 0.78816 1.20224 1.21667 1.18342 1.21278 0.98042 0.95488 0.83463 1.45875 1.52915 1.31981 1.04747 1.18330 0.79606 0.83449 0.83698 1.90764 1.40233 1.28142 1.87349 1.20744 1.07110 1.01016 0.94200 1.21431 0.93286 0.97675 0.90278 1.21459 1.01235 0.96515 1.01367 1.20288 0.92150 0.89657 0.88613 1.59193 1.37080 1.09294 1.13828 1.23144 0.96987 0.96064 0.94391 1.22883 0.97112 0.87308 0.94168 1.88002 1.40963 1.36332 1.66896 1.22856 0.97493 0.92156 0.88941 1.22701 0.96464 0.92159 0.98261 1.67719 1.25010 1.33617 0.98440 1.23013 0.89333 0.88904 0.97764 0.91223 0.92454 0.94311 0.94313 0.92408 0.91220 0.99488 0.99474 0.93222 0.93175 0.93168 0.75024 0.83220 0.81252 0.93271 0.86460 0.90976 0.85749 0.91452 0.86466 0.88795 0.93152 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.46 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.18 7.65 25.60 0.20 -26.99 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.60 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 13 C 0.14 4.94 4.56 86.38 0.39 5.33 16 14 N -0.70 -19.13 4.91 -466.25 -2.29 -21.42 16 15 C 0.56 16.39 7.77 86.70 0.67 17.06 16 16 O -0.58 -21.83 16.41 -4.02 -0.07 -21.90 16 17 C -0.22 -5.05 5.89 -19.99 -0.12 -5.17 16 18 C 0.00 -0.01 9.65 22.46 0.22 0.21 16 19 C -0.18 -2.81 9.14 22.22 0.20 -2.60 16 20 C 0.33 5.65 6.39 133.25 0.85 6.50 16 21 N -0.48 -6.69 4.74 -701.03 -3.32 -10.01 16 22 C 0.02 0.19 5.39 86.31 0.46 0.65 16 23 C 0.06 0.51 7.01 72.01 0.50 1.01 16 24 O -0.40 -5.41 10.83 -148.98 -1.61 -7.02 16 25 C 0.06 0.67 7.01 72.01 0.50 1.17 16 26 C 0.03 0.43 4.81 86.31 0.42 0.85 16 27 N -0.53 -10.43 8.67 -192.33 -1.67 -12.10 16 28 C 0.17 3.24 10.71 85.03 0.91 4.15 16 29 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 30 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 34 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 35 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 36 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.41 8.61 4.21 -92.71 -0.39 8.22 16 41 H 0.15 2.89 7.73 -2.91 -0.02 2.87 16 42 H 0.17 1.55 7.16 -2.91 -0.02 1.53 16 43 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.12 0.66 6.80 -2.38 -0.02 0.64 16 45 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 1.38 7.85 -2.38 -0.02 1.36 16 50 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 51 H 0.18 2.56 6.41 -2.91 -0.02 2.54 16 Total: -1.00 -72.61 400.49 0.84 -71.77 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.55 Total: 16.70 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 6.93 Total: -4.95 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -6.99 Total: -100.04 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.68 Total: -28.92 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.61 0.84 -71.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805278512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.361 kcal (2) G-P(sol) polarization free energy of solvation -72.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds