Wall clock time and date at job start Wed Apr 1 2020 04:24:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52997 * 109.47131 * 2 1
4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2
6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3
7 7 H 1.09006 * 109.46758 * 304.99395 * 6 5 4
8 8 N 1.46493 * 109.47485 * 64.99753 * 6 5 4
9 9 C 1.34778 * 120.00226 * 205.00306 * 8 6 5
10 10 O 1.21589 * 119.99840 * 359.97438 * 9 8 6
11 11 N 1.34776 * 120.00053 * 180.02562 * 9 8 6
12 12 C 1.46503 * 120.00052 * 180.02562 * 11 9 8
13 13 C 1.50698 * 109.46963 * 179.97438 * 12 11 9
14 14 O 1.21292 * 120.00483 * 359.97438 * 13 12 11
15 15 N 1.34781 * 119.99668 * 179.97438 * 13 12 11
16 16 C 1.37103 * 119.99769 * 179.97438 * 15 13 12
17 17 H 1.07995 * 119.99868 * 0.02562 * 16 15 13
18 18 C 1.38947 * 119.99941 * 180.02562 * 16 15 13
19 19 N 1.31416 * 119.99740 * 359.97438 * 18 16 15
20 20 Si 1.86794 * 120.00091 * 180.02562 * 18 16 15
21 21 H 1.48505 * 109.47227 * 359.97438 * 20 18 16
22 22 H 1.48496 * 109.47557 * 119.99981 * 20 18 16
23 23 H 1.48504 * 109.46950 * 240.00033 * 20 18 16
24 24 C 1.50703 * 109.47152 * 184.99915 * 6 5 4
25 25 C 1.38229 * 120.00218 * 279.72457 * 24 6 5
26 26 C 1.38232 * 120.00500 * 179.79087 * 25 24 6
27 27 C 1.38240 * 119.99413 * 0.43458 * 26 25 24
28 28 C 1.38236 * 120.00245 * 359.82145 * 27 26 25
29 29 C 1.38226 * 119.99739 * 359.96804 * 28 27 26
30 30 H 1.09001 * 109.46997 * 60.00426 * 1 2 3
31 31 H 1.09000 * 109.47054 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47380 * 300.00763 * 1 2 3
33 33 H 1.08996 * 109.47452 * 240.00000 * 2 1 3
34 34 H 1.09001 * 109.46997 * 119.99574 * 2 1 3
35 35 H 1.09001 * 109.47502 * 60.00153 * 3 2 1
36 36 H 1.09001 * 109.47289 * 299.99950 * 3 2 1
37 37 H 1.09001 * 109.47002 * 299.99574 * 4 3 2
38 38 H 1.08993 * 109.46955 * 60.00011 * 4 3 2
39 39 H 1.09001 * 109.47289 * 299.99953 * 5 4 3
40 40 H 1.09004 * 109.47261 * 59.99697 * 5 4 3
41 41 H 0.97003 * 119.99788 * 24.99545 * 8 6 5
42 42 H 0.97003 * 119.99961 * 359.97438 * 11 9 8
43 43 H 1.09001 * 109.46314 * 299.99399 * 12 11 9
44 44 H 1.08995 * 109.47153 * 59.99331 * 12 11 9
45 45 H 0.96994 * 119.99824 * 0.02562 * 15 13 12
46 46 H 0.97006 * 119.99511 * 179.97438 * 19 18 16
47 47 H 1.08004 * 119.99528 * 359.97438 * 25 24 6
48 48 H 1.08001 * 120.00721 * 180.27597 * 26 25 24
49 49 H 1.08004 * 119.99356 * 179.83351 * 27 26 25
50 50 H 1.07997 * 119.99543 * 179.97438 * 28 27 26
51 51 H 1.07999 * 119.99741 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 6 4.0800 2.8849 0.0013
6 6 5.6100 2.8849 0.0013
7 1 5.9733 2.2952 0.8430
8 7 6.0984 2.3018 -1.2507
9 6 7.3203 1.7352 -1.2986
10 8 8.0176 1.7085 -0.3029
11 7 7.7699 1.1991 -2.4506
12 6 9.0979 0.5828 -2.5026
13 6 9.3565 0.0635 -3.8934
14 8 8.5143 0.1948 -4.7563
15 7 10.5239 -0.5469 -4.1785
16 6 10.7590 -1.0199 -5.4438
17 1 10.0090 -0.9029 -6.2120
18 6 11.9622 -1.6496 -5.7376
19 7 12.8750 -1.7915 -4.8029
20 14 12.2828 -2.2934 -7.4616
21 1 11.1063 -2.0103 -8.3225
22 1 13.4820 -1.6230 -8.0253
23 1 12.5148 -3.7592 -7.4074
24 6 6.1123 4.3003 0.1257
25 6 6.1521 5.1200 -0.9866
26 6 6.6088 6.4196 -0.8717
27 6 7.0342 6.8967 0.3540
28 6 6.9994 6.0754 1.4654
29 6 6.5387 4.7773 1.3512
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 1.8933 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.6767 1.9564 0.8900
36 1 1.6766 1.9563 -0.8900
37 1 3.9330 0.9288 0.8909
38 1 3.9337 0.9285 -0.8891
39 1 3.7171 3.3991 -0.8887
40 1 3.7163 3.3986 0.8913
41 1 5.5422 2.3233 -2.0451
42 1 7.2137 1.2207 -3.2451
43 1 9.8532 1.3253 -2.2453
44 1 9.1433 -0.2429 -1.7925
45 1 11.1973 -0.6523 -3.4884
46 1 13.7148 -2.2315 -5.0080
47 1 5.8235 4.7458 -1.9450
48 1 6.6357 7.0614 -1.7399
49 1 7.3936 7.9113 0.4433
50 1 7.3322 6.4482 2.4228
51 1 6.5111 4.1357 2.2196
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000807554529.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:20
Heat of formation + Delta-G solvation = -71.691004 kcal
Electronic energy + Delta-G solvation = -29692.582956 eV
Core-core repulsion = 25590.627421 eV
Total energy + Delta-G solvation = -4101.955535 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.32368 -39.10495 -38.15435 -36.95937 -35.20401 -34.35864 -33.61824 -32.13484
-31.36992 -31.19259 -30.90820 -28.17309 -27.11346 -24.71999 -24.17894 -22.73524
-21.99578 -21.24757 -21.07081 -20.36927 -19.55918 -18.41790 -17.93683 -17.13546
-16.41334 -15.86988 -15.65418 -15.56981 -15.11302 -15.00100 -14.58073 -14.44096
-14.26848 -14.09841 -13.96915 -13.87087 -13.51421 -13.48111 -13.36701 -13.11296
-12.83984 -12.40431 -12.16194 -12.11889 -11.93731 -11.72167 -11.62504 -11.40205
-11.22400 -11.18403 -11.13818 -11.03562 -10.76993 -10.75926 -10.40418 -10.31827
-9.98489 -9.63609 -9.18950 -8.98199 -8.81418 -8.61002 -8.57675 -8.08728
-6.50390 -3.92309 1.24778 1.33435 2.84385 3.10825 3.22941 3.29687
3.43998 3.69502 3.76773 4.10033 4.30147 4.47728 4.62143 4.67486
4.76411 4.78277 4.89998 4.91437 4.92443 4.98101 5.02709 5.15821
5.18460 5.26141 5.39124 5.41467 5.45105 5.50925 5.54708 5.65111
5.67767 5.78065 5.80520 5.89565 5.92427 5.94966 5.97739 6.03254
6.06175 6.10187 6.13527 6.37367 6.39260 6.42748 6.64810 6.78937
6.91460 7.12600 7.47194 7.93924 8.27281 8.46550 8.84515 9.05927
9.41038 9.88866 10.66623
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008438 B = 0.002311 C = 0.001911
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3317.671979 B =12115.408516 C =14647.285432
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.127 4.127
3 C -0.119 4.119
4 C -0.121 4.121
5 C -0.120 4.120
6 C 0.206 3.794
7 H 0.097 0.903
8 N -0.741 5.741
9 C 0.706 3.294
10 O -0.594 6.594
11 N -0.725 5.725
12 C 0.129 3.871
13 C 0.429 3.571
14 O -0.598 6.598
15 N -0.550 5.550
16 C -0.304 4.304
17 H 0.106 0.894
18 C 0.025 3.975
19 N -0.895 5.895
20 Si 0.932 3.068
21 H -0.267 1.267
22 H -0.280 1.280
23 H -0.280 1.280
24 C -0.091 4.091
25 C -0.103 4.103
26 C -0.122 4.122
27 C -0.124 4.124
28 C -0.122 4.122
29 C -0.104 4.104
30 H 0.053 0.947
31 H 0.052 0.948
32 H 0.052 0.948
33 H 0.062 0.938
34 H 0.061 0.939
35 H 0.060 0.940
36 H 0.061 0.939
37 H 0.064 0.936
38 H 0.067 0.933
39 H 0.069 0.931
40 H 0.079 0.921
41 H 0.395 0.605
42 H 0.406 0.594
43 H 0.081 0.919
44 H 0.081 0.919
45 H 0.396 0.604
46 H 0.273 0.727
47 H 0.118 0.882
48 H 0.119 0.881
49 H 0.118 0.882
50 H 0.120 0.880
51 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.359 11.959 12.815 26.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.165 4.165
3 C -0.156 4.156
4 C -0.159 4.159
5 C -0.158 4.158
6 C 0.100 3.900
7 H 0.115 0.885
8 N -0.396 5.396
9 C 0.406 3.594
10 O -0.472 6.472
11 N -0.382 5.382
12 C 0.001 3.999
13 C 0.215 3.785
14 O -0.485 6.485
15 N -0.185 5.185
16 C -0.433 4.433
17 H 0.123 0.877
18 C -0.178 4.178
19 N -0.535 5.535
20 Si 0.759 3.241
21 H -0.192 1.192
22 H -0.206 1.206
23 H -0.206 1.206
24 C -0.092 4.092
25 C -0.121 4.121
26 C -0.140 4.140
27 C -0.142 4.142
28 C -0.140 4.140
29 C -0.123 4.123
30 H 0.072 0.928
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.081 0.919
34 H 0.079 0.921
35 H 0.079 0.921
36 H 0.080 0.920
37 H 0.083 0.917
38 H 0.086 0.914
39 H 0.088 0.912
40 H 0.098 0.902
41 H 0.229 0.771
42 H 0.243 0.757
43 H 0.099 0.901
44 H 0.099 0.901
45 H 0.230 0.770
46 H 0.083 0.917
47 H 0.136 0.864
48 H 0.137 0.863
49 H 0.136 0.864
50 H 0.138 0.862
51 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -19.044 11.885 13.125 26.004
hybrid contribution 0.356 -0.335 -1.182 1.280
sum -18.688 11.550 11.943 25.006
Atomic orbital electron populations
1.21777 0.96048 1.01544 1.01649 1.21544 0.95692 0.97011 1.02220
1.21614 0.95308 0.96762 1.01935 1.21628 0.95198 0.96136 1.02904
1.21883 0.92865 0.97754 1.03312 1.19667 0.93059 0.89722 0.87569
0.88523 1.45098 1.17484 1.63551 1.13489 1.15846 0.81555 0.78290
0.83719 1.90905 1.57074 1.64618 1.34611 1.44764 1.19262 1.62186
1.11981 1.20764 0.84051 0.98233 0.96867 1.19777 0.84420 0.85081
0.89209 1.90487 1.46189 1.62996 1.48789 1.41801 1.14576 1.49562
1.12561 1.19768 1.01854 1.33864 0.87816 0.87661 1.25328 0.95364
0.97274 0.99842 1.69630 1.07563 1.42869 1.33424 0.85761 0.78535
0.78330 0.81473 1.19155 1.20627 1.20624 1.20280 0.99294 0.95897
0.93750 1.20911 0.99516 0.93550 0.98137 1.21129 0.99447 0.95898
0.97568 1.21130 1.00232 0.99750 0.93075 1.21102 1.00058 0.94164
0.98647 1.20985 0.98421 0.95721 0.97170 0.92807 0.92863 0.92899
0.91900 0.92060 0.92124 0.92038 0.91718 0.91436 0.91184 0.90243
0.77054 0.75700 0.90119 0.90086 0.77026 0.91661 0.86413 0.86274
0.86374 0.86214 0.86092
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16
2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16
3 C -0.12 -0.80 5.21 -26.73 -0.14 -0.94 16
4 C -0.12 -0.92 5.10 -26.73 -0.14 -1.06 16
5 C -0.12 -0.90 4.73 -26.73 -0.13 -1.02 16
6 C 0.21 2.13 2.17 -69.09 -0.15 1.98 16
7 H 0.10 1.17 7.44 -51.93 -0.39 0.78 16
8 N -0.74 -8.59 3.76 -59.81 -0.23 -8.82 16
9 C 0.71 11.36 8.52 -86.92 -0.74 10.62 16
10 O -0.59 -11.61 16.01 5.29 0.08 -11.53 16
11 N -0.72 -12.19 5.53 -66.41 -0.37 -12.55 16
12 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16
13 C 0.43 9.91 7.85 -10.98 -0.09 9.82 16
14 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16
15 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16
16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16
17 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16
18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16
19 N -0.89 -24.03 13.05 55.50 0.72 -23.30 16
20 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16
21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16
22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16
24 C -0.09 -1.02 4.91 -104.62 -0.51 -1.53 16
25 C -0.10 -1.13 9.33 -39.59 -0.37 -1.50 16
26 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16
27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16
28 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16
29 C -0.10 -1.14 9.67 -39.59 -0.38 -1.52 16
30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16
39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.40 3.70 8.62 -40.82 -0.35 3.35 16
42 H 0.41 6.60 7.45 -40.82 -0.30 6.30 16
43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16
44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16
45 H 0.40 9.55 7.90 -40.82 -0.32 9.22 16
46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
47 H 0.12 1.17 7.71 -52.48 -0.40 0.77 16
48 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16
49 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16
50 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16
51 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16
LS Contribution 426.83 15.07 6.43 6.43
Total: -1.00 -32.31 426.83 -10.70 -43.01
By element:
Atomic # 1 Polarization: 25.82 SS G_CDS: -8.45 Total: 17.38 kcal
Atomic # 6 Polarization: 6.70 SS G_CDS: -3.90 Total: 2.80 kcal
Atomic # 7 Polarization: -58.55 SS G_CDS: 0.07 Total: -58.47 kcal
Atomic # 8 Polarization: -26.90 SS G_CDS: 0.17 Total: -26.73 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal
Total LS contribution 6.43 Total: 6.43 kcal
Total: -32.31 -10.70 -43.01 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000807554529.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.683 kcal
(2) G-P(sol) polarization free energy of solvation -32.313 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.691 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds