Wall clock time and date at job start Wed Apr 1 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47313 * 2 1 4 4 C 1.52996 * 109.47189 * 239.99601 * 2 1 3 5 5 N 1.46500 * 109.46991 * 119.99856 * 2 1 3 6 6 C 1.34780 * 120.00071 * 59.99803 * 5 2 1 7 7 O 1.21597 * 119.99938 * 359.97438 * 6 5 2 8 8 C 1.47516 * 120.00159 * 179.97438 * 6 5 2 9 9 C 1.39685 * 120.20311 * 5.60324 * 8 6 5 10 10 C 1.37792 * 119.92598 * 180.27124 * 9 8 6 11 11 C 1.38567 * 120.33116 * 359.72919 * 10 9 8 12 12 C 1.38026 * 120.40272 * 359.97438 * 11 10 9 13 13 C 1.38854 * 120.06754 * 0.03185 * 12 11 10 14 14 N 1.39289 * 120.15973 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00129 * 35.22535 * 14 13 12 16 16 O 1.21276 * 120.00242 * 355.49507 * 15 14 13 17 17 C 1.50706 * 119.99983 * 175.49957 * 15 14 13 18 18 H 1.09000 * 109.46899 * 319.99324 * 17 15 14 19 19 N 1.46901 * 109.46813 * 199.99696 * 17 15 14 20 20 C 1.52995 * 109.47265 * 79.99654 * 17 15 14 21 21 C 1.52996 * 109.47353 * 185.00229 * 20 17 15 22 22 C 1.50695 * 109.47525 * 179.97438 * 21 20 17 23 23 H 1.08005 * 119.99868 * 359.97438 * 22 21 20 24 24 C 1.37881 * 120.00542 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99203 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00522 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47077 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47216 * 120.00151 * 26 24 22 29 29 H 1.48501 * 109.47149 * 240.00771 * 26 24 22 30 30 H 1.08999 * 109.46831 * 300.00140 * 1 2 3 31 31 H 1.09000 * 109.46916 * 59.99621 * 1 2 3 32 32 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46757 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46800 * 299.99751 * 3 2 1 35 35 H 1.09000 * 109.46766 * 60.00193 * 3 2 1 36 36 H 1.09001 * 109.47390 * 300.00741 * 4 2 1 37 37 H 1.09009 * 109.47040 * 60.00248 * 4 2 1 38 38 H 1.08995 * 109.47570 * 179.97438 * 4 2 1 39 39 H 0.96999 * 120.00196 * 239.99649 * 5 2 1 40 40 H 1.08010 * 120.03485 * 359.97232 * 9 8 6 41 41 H 1.08002 * 119.83616 * 179.74360 * 10 9 8 42 42 H 1.08002 * 119.79828 * 180.02562 * 11 10 9 43 43 H 1.07999 * 119.96499 * 180.02562 * 12 11 10 44 44 H 0.97002 * 119.99806 * 215.22241 * 14 13 12 45 45 H 1.00901 * 111.00011 * 299.99524 * 19 17 15 46 46 H 1.00895 * 110.99991 * 63.95583 * 19 17 15 47 47 H 1.09002 * 109.47458 * 305.00094 * 20 17 15 48 48 H 1.08999 * 109.47582 * 64.99846 * 20 17 15 49 49 H 1.08998 * 109.47068 * 299.99936 * 21 20 17 50 50 H 1.08998 * 109.47386 * 59.99769 * 21 20 17 51 51 H 0.97008 * 119.99694 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4095 7 8 0.9932 -2.5717 0.6094 8 6 2.1848 -2.6765 2.6137 9 6 2.8897 -1.9727 3.5930 10 6 3.3516 -2.6292 4.7129 11 6 3.1158 -3.9849 4.8764 12 6 2.4156 -4.6924 3.9202 13 6 1.9426 -4.0474 2.7852 14 7 1.2362 -4.7596 1.8188 15 6 0.4127 -5.7608 2.1873 16 8 0.3484 -6.0959 3.3511 17 6 -0.4281 -6.4642 1.1532 18 1 -0.8153 -5.7344 0.4421 19 7 -1.5489 -7.1458 1.8145 20 6 0.4289 -7.4928 0.4127 21 6 -0.3889 -8.1182 -0.7191 22 6 0.4554 -9.1308 -1.4489 23 1 1.4737 -9.3101 -1.1369 24 6 -0.0721 -9.8285 -2.5148 25 7 -1.3120 -9.6097 -2.8949 26 14 0.9742 -11.0842 -3.4189 27 1 2.3226 -11.1429 -2.7996 28 1 0.3311 -12.4198 -3.3309 29 1 1.1008 -10.6886 -4.8447 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7210 -1.2494 39 1 2.5760 -0.2192 1.8347 40 1 3.0766 -0.9160 3.4702 41 1 3.9000 -2.0845 5.4672 42 1 3.4815 -4.4908 5.7577 43 1 2.2355 -5.7487 4.0550 44 1 1.3369 -4.5349 0.8805 45 1 -1.2158 -7.8280 2.4791 46 1 -2.1659 -6.4813 2.2568 47 1 1.3083 -7.0011 -0.0034 48 1 0.7430 -8.2718 1.1073 49 1 -1.2683 -8.6099 -0.3031 50 1 -0.7030 -7.3392 -1.4138 51 1 -1.6830 -10.1002 -3.6450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818056273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:33 Heat of formation + Delta-G solvation = -55.941909 kcal Electronic energy + Delta-G solvation = -31038.576293 eV Core-core repulsion = 26937.303690 eV Total energy + Delta-G solvation = -4101.272603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.15687 -39.98453 -38.52631 -36.72473 -35.32529 -34.71914 -32.91455 -32.77113 -30.68918 -30.13767 -29.85682 -27.72532 -27.46595 -26.43295 -24.42770 -23.96084 -22.58953 -21.27996 -20.66477 -19.92235 -19.57234 -18.30865 -17.49585 -17.12575 -16.24152 -16.18112 -15.66843 -15.50854 -15.26923 -14.94640 -14.87440 -14.42177 -14.38043 -14.23915 -14.00247 -13.85681 -13.63374 -13.38839 -12.90606 -12.77149 -12.39880 -12.35720 -12.30367 -12.24243 -12.01837 -11.86887 -11.76806 -11.52536 -11.42926 -11.31327 -10.88903 -10.66977 -10.52663 -10.49865 -10.12307 -9.78000 -9.73178 -9.43042 -9.35193 -9.16684 -8.95474 -8.38292 -8.26384 -8.17642 -5.90623 -3.92572 0.59740 1.10732 2.62822 2.72368 2.82204 3.17801 3.36196 3.43521 3.47548 3.67158 4.28509 4.48291 4.52624 4.58035 4.59638 4.74342 4.75428 4.83914 5.00581 5.07729 5.18282 5.20983 5.30402 5.35554 5.44956 5.48100 5.51614 5.53000 5.58214 5.63100 5.69295 5.71450 5.84588 5.92555 6.02946 6.12866 6.15961 6.23838 6.30758 6.35176 6.46203 6.65760 6.80538 7.11027 7.21046 7.37460 7.56381 7.79621 7.81465 7.97232 7.99930 8.16288 8.21123 8.51563 9.15472 9.70319 11.20338 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.002846 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.346721 B = 9836.944931 C =11546.499164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 C -0.155 4.155 4 C -0.166 4.166 5 N -0.720 5.720 6 C 0.567 3.433 7 O -0.530 6.530 8 C -0.179 4.179 9 C -0.069 4.069 10 C -0.152 4.152 11 C -0.073 4.073 12 C -0.135 4.135 13 C 0.217 3.783 14 N -0.658 5.658 15 C 0.486 3.514 16 O -0.538 6.538 17 C 0.081 3.919 18 H 0.104 0.896 19 N -0.804 5.804 20 C -0.096 4.096 21 C 0.031 3.969 22 C -0.521 4.521 23 H 0.052 0.948 24 C 0.057 3.943 25 N -0.892 5.892 26 Si 0.889 3.111 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.397 0.603 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.147 0.853 44 H 0.426 0.574 45 H 0.348 0.652 46 H 0.335 0.665 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.036 0.964 50 H 0.014 0.986 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.554 24.710 12.893 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.084 3.916 3 C -0.213 4.213 4 C -0.224 4.224 5 N -0.372 5.372 6 C 0.356 3.644 7 O -0.408 6.408 8 C -0.185 4.185 9 C -0.088 4.088 10 C -0.171 4.171 11 C -0.092 4.092 12 C -0.155 4.155 13 C 0.119 3.881 14 N -0.306 5.306 15 C 0.274 3.726 16 O -0.415 6.415 17 C -0.035 4.035 18 H 0.122 0.878 19 N -0.332 5.332 20 C -0.134 4.134 21 C -0.006 4.006 22 C -0.560 4.560 23 H 0.071 0.929 24 C -0.144 4.144 25 N -0.531 5.531 26 Si 0.717 3.283 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.233 0.767 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.268 0.732 45 H 0.162 0.838 46 H 0.147 0.853 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.033 0.967 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.578 23.689 12.164 27.977 hybrid contribution 1.335 0.262 0.311 1.395 sum 9.912 23.952 12.475 28.768 Atomic orbital electron populations 1.22240 0.93983 1.04419 1.01655 1.20369 0.94610 0.91624 0.85002 1.22094 1.01552 0.94533 1.03094 1.22247 1.00886 1.03148 0.96091 1.46047 1.53920 1.11875 1.25400 1.18091 0.79639 0.81549 0.85129 1.90645 1.37729 1.65825 1.46607 1.19735 1.08171 0.92703 0.97908 1.21029 0.95703 0.99024 0.93047 1.21001 1.02743 0.94955 0.98377 1.21272 0.95519 0.94151 0.98222 1.21413 0.98188 1.01904 0.94037 1.17846 0.90740 0.88993 0.90570 1.44041 1.42257 1.33259 1.11067 1.23126 0.79461 0.78469 0.91583 1.90621 1.66797 1.63990 1.20046 1.21877 0.91087 0.96906 0.93592 0.87788 1.58997 1.17144 1.18423 1.38619 1.21680 0.97329 0.95542 0.98836 1.19017 0.95455 0.95225 0.90893 1.21312 0.98740 1.21667 1.14232 0.92941 1.24995 0.94950 0.97147 0.97285 1.69994 1.13764 1.41926 1.27440 0.86594 0.80585 0.81505 0.79635 1.19870 1.21082 1.21108 0.92888 0.91761 0.89971 0.91948 0.90670 0.92024 0.89910 0.91737 0.92738 0.76734 0.85699 0.85498 0.85300 0.83547 0.73169 0.83839 0.85335 0.92820 0.92745 0.94607 0.96731 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.40 37.16 0.31 -1.20 16 2 C 0.17 1.35 1.06 -131.82 -0.14 1.21 16 3 C -0.16 -0.80 8.59 37.16 0.32 -0.49 16 4 C -0.17 -1.53 8.40 37.16 0.31 -1.22 16 5 N -0.72 -5.89 5.05 -48.64 -0.25 -6.14 16 6 C 0.57 6.53 7.16 -12.48 -0.09 6.44 16 7 O -0.53 -7.54 10.18 5.28 0.05 -7.48 16 8 C -0.18 -2.05 5.89 -104.81 -0.62 -2.66 16 9 C -0.07 -0.57 9.52 -39.20 -0.37 -0.95 16 10 C -0.15 -1.23 10.02 -39.62 -0.40 -1.63 16 11 C -0.07 -0.72 10.03 -39.54 -0.40 -1.11 16 12 C -0.14 -1.77 8.68 -39.43 -0.34 -2.11 16 13 C 0.22 3.00 6.30 -83.48 -0.53 2.47 16 14 N -0.66 -9.93 4.56 -9.68 -0.04 -9.98 16 15 C 0.49 8.13 6.91 -10.99 -0.08 8.06 16 16 O -0.54 -9.71 13.69 5.56 0.08 -9.64 16 17 C 0.08 1.44 3.15 -68.86 -0.22 1.23 16 18 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 19 N -0.80 -13.98 8.44 -5.65 -0.05 -14.02 16 20 C -0.10 -1.99 4.78 -26.74 -0.13 -2.12 16 21 C 0.03 0.82 4.86 -27.89 -0.14 0.68 16 22 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 23 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 26 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 27 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.18 6.53 -40.82 -0.27 1.91 16 40 H 0.13 0.62 6.44 -52.48 -0.34 0.28 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.15 2.15 6.23 -52.49 -0.33 1.83 16 44 H 0.43 6.41 6.55 -40.82 -0.27 6.14 16 45 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 46 H 0.33 5.14 9.06 -39.29 -0.36 4.78 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.04 1.01 7.75 -51.93 -0.40 0.60 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 409.60 15.07 6.17 6.17 Total: -1.00 -33.75 409.60 -9.20 -42.95 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -7.97 Total: 14.77 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.91 Total: -7.12 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.40 Total: -56.68 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.13 Total: -17.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.75 -9.20 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818056273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.995 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds