Wall clock time and date at job start Wed Apr 1 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47313 * 2 1 4 4 C 1.52996 * 109.47189 * 239.99601 * 2 1 3 5 5 N 1.46500 * 109.46991 * 119.99856 * 2 1 3 6 6 C 1.34780 * 120.00071 * 59.99803 * 5 2 1 7 7 O 1.21597 * 119.99938 * 359.97438 * 6 5 2 8 8 C 1.47516 * 120.00159 * 179.97438 * 6 5 2 9 9 C 1.39685 * 120.20311 * 5.60324 * 8 6 5 10 10 C 1.37792 * 119.92598 * 180.27124 * 9 8 6 11 11 C 1.38567 * 120.33116 * 359.72919 * 10 9 8 12 12 C 1.38026 * 120.40272 * 359.97438 * 11 10 9 13 13 C 1.38854 * 120.06754 * 0.03185 * 12 11 10 14 14 N 1.39289 * 120.15973 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00129 * 35.22535 * 14 13 12 16 16 O 1.21276 * 120.00242 * 355.49507 * 15 14 13 17 17 C 1.50706 * 119.99983 * 175.49957 * 15 14 13 18 18 H 1.09000 * 109.46899 * 319.99324 * 17 15 14 19 19 N 1.46901 * 109.46813 * 199.99696 * 17 15 14 20 20 C 1.52995 * 109.47265 * 79.99654 * 17 15 14 21 21 C 1.52996 * 109.47353 * 185.00229 * 20 17 15 22 22 C 1.50695 * 109.47525 * 179.97438 * 21 20 17 23 23 H 1.08005 * 119.99868 * 359.97438 * 22 21 20 24 24 C 1.37881 * 120.00542 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99203 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00522 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47077 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47216 * 120.00151 * 26 24 22 29 29 H 1.48501 * 109.47149 * 240.00771 * 26 24 22 30 30 H 1.08999 * 109.46831 * 300.00140 * 1 2 3 31 31 H 1.09000 * 109.46916 * 59.99621 * 1 2 3 32 32 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46757 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46800 * 299.99751 * 3 2 1 35 35 H 1.09000 * 109.46766 * 60.00193 * 3 2 1 36 36 H 1.09001 * 109.47390 * 300.00741 * 4 2 1 37 37 H 1.09009 * 109.47040 * 60.00248 * 4 2 1 38 38 H 1.08995 * 109.47570 * 179.97438 * 4 2 1 39 39 H 0.96999 * 120.00196 * 239.99649 * 5 2 1 40 40 H 1.08010 * 120.03485 * 359.97232 * 9 8 6 41 41 H 1.08002 * 119.83616 * 179.74360 * 10 9 8 42 42 H 1.08002 * 119.79828 * 180.02562 * 11 10 9 43 43 H 1.07999 * 119.96499 * 180.02562 * 12 11 10 44 44 H 0.97002 * 119.99806 * 215.22241 * 14 13 12 45 45 H 1.00901 * 111.00011 * 299.99524 * 19 17 15 46 46 H 1.00895 * 110.99991 * 63.95583 * 19 17 15 47 47 H 1.09002 * 109.47458 * 305.00094 * 20 17 15 48 48 H 1.08999 * 109.47582 * 64.99846 * 20 17 15 49 49 H 1.08998 * 109.47068 * 299.99936 * 21 20 17 50 50 H 1.08998 * 109.47386 * 59.99769 * 21 20 17 51 51 H 0.97008 * 119.99694 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4095 7 8 0.9932 -2.5717 0.6094 8 6 2.1848 -2.6765 2.6137 9 6 2.8897 -1.9727 3.5930 10 6 3.3516 -2.6292 4.7129 11 6 3.1158 -3.9849 4.8764 12 6 2.4156 -4.6924 3.9202 13 6 1.9426 -4.0474 2.7852 14 7 1.2362 -4.7596 1.8188 15 6 0.4127 -5.7608 2.1873 16 8 0.3484 -6.0959 3.3511 17 6 -0.4281 -6.4642 1.1532 18 1 -0.8153 -5.7344 0.4421 19 7 -1.5489 -7.1458 1.8145 20 6 0.4289 -7.4928 0.4127 21 6 -0.3889 -8.1182 -0.7191 22 6 0.4554 -9.1308 -1.4489 23 1 1.4737 -9.3101 -1.1369 24 6 -0.0721 -9.8285 -2.5148 25 7 -1.3120 -9.6097 -2.8949 26 14 0.9742 -11.0842 -3.4189 27 1 2.3226 -11.1429 -2.7996 28 1 0.3311 -12.4198 -3.3309 29 1 1.1008 -10.6886 -4.8447 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7210 -1.2494 39 1 2.5760 -0.2192 1.8347 40 1 3.0766 -0.9160 3.4702 41 1 3.9000 -2.0845 5.4672 42 1 3.4815 -4.4908 5.7577 43 1 2.2355 -5.7487 4.0550 44 1 1.3369 -4.5349 0.8805 45 1 -1.2158 -7.8280 2.4791 46 1 -2.1659 -6.4813 2.2568 47 1 1.3083 -7.0011 -0.0034 48 1 0.7430 -8.2718 1.1073 49 1 -1.2683 -8.6099 -0.3031 50 1 -0.7030 -7.3392 -1.4138 51 1 -1.6830 -10.1002 -3.6450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818056273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:32 Heat of formation + Delta-G solvation = -79.823288 kcal Electronic energy + Delta-G solvation = -31039.611868 eV Core-core repulsion = 26937.303690 eV Total energy + Delta-G solvation = -4102.308178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14926 -41.02964 -39.44816 -37.51231 -36.93424 -35.85808 -34.86143 -33.70452 -31.99662 -31.44088 -30.87613 -28.24406 -28.20477 -28.17264 -25.86120 -25.02263 -23.76275 -22.40667 -22.02244 -21.17513 -20.51280 -19.18152 -18.74937 -18.28722 -18.16148 -17.14722 -16.92720 -16.56489 -16.38986 -16.16160 -15.99044 -15.84941 -15.41514 -15.21418 -15.03812 -14.89821 -14.58043 -14.44922 -14.30396 -13.87906 -13.78200 -13.47512 -13.31196 -13.03326 -13.02156 -12.97188 -12.84046 -12.65345 -12.53061 -12.46642 -12.30673 -12.11451 -11.98538 -11.78587 -11.71956 -11.48933 -11.27317 -11.01519 -10.62443 -10.51777 -10.23127 -9.94867 -9.73986 -9.22024 -8.15565 -6.26392 -0.24250 0.26618 1.39247 1.40744 1.41357 1.53862 1.82355 2.02141 2.10111 2.43194 2.83449 3.17154 3.44290 3.59761 3.66500 3.77721 3.93438 3.99829 4.02234 4.09749 4.13028 4.22517 4.35883 4.39552 4.44824 4.69854 4.70305 4.72498 4.78146 4.85285 4.86426 4.86649 4.96059 5.01074 5.11603 5.18838 5.23271 5.25250 5.37868 5.39992 5.41341 5.47838 5.54344 5.59382 5.79587 5.91014 5.94881 6.00220 6.27283 6.28202 6.45303 6.57178 6.91474 6.91699 7.22425 7.41619 8.96125 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.002846 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.346721 B = 9836.944931 C =11546.499164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.167 3.833 3 C -0.147 4.147 4 C -0.165 4.165 5 N -0.702 5.702 6 C 0.560 3.440 7 O -0.565 6.565 8 C -0.186 4.186 9 C -0.058 4.058 10 C -0.137 4.137 11 C -0.072 4.072 12 C -0.158 4.158 13 C 0.178 3.822 14 N -0.653 5.653 15 C 0.491 3.509 16 O -0.554 6.554 17 C 0.090 3.910 18 H 0.101 0.899 19 N -0.813 5.813 20 C -0.081 4.081 21 C 0.041 3.959 22 C -0.544 4.544 23 H 0.056 0.944 24 C 0.000 4.000 25 N -0.930 5.930 26 Si 0.963 3.037 27 H -0.264 1.264 28 H -0.278 1.278 29 H -0.277 1.277 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.413 0.587 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.120 0.880 44 H 0.423 0.577 45 H 0.348 0.652 46 H 0.347 0.653 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.009 0.991 50 H -0.011 1.011 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.198 27.445 14.251 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.082 3.918 3 C -0.205 4.205 4 C -0.223 4.223 5 N -0.355 5.355 6 C 0.349 3.651 7 O -0.446 6.446 8 C -0.192 4.192 9 C -0.077 4.077 10 C -0.155 4.155 11 C -0.091 4.091 12 C -0.178 4.178 13 C 0.081 3.919 14 N -0.301 5.301 15 C 0.278 3.722 16 O -0.432 6.432 17 C -0.026 4.026 18 H 0.119 0.881 19 N -0.342 5.342 20 C -0.119 4.119 21 C 0.003 3.997 22 C -0.582 4.582 23 H 0.074 0.926 24 C -0.197 4.197 25 N -0.570 5.570 26 Si 0.788 3.212 27 H -0.188 1.188 28 H -0.204 1.204 29 H -0.203 1.203 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.252 0.748 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.170 0.830 43 H 0.138 0.862 44 H 0.265 0.735 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.028 0.972 50 H 0.008 0.992 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.262 26.488 13.555 31.815 hybrid contribution 0.537 -0.471 -0.066 0.717 sum 11.800 26.017 13.488 31.592 Atomic orbital electron populations 1.22206 0.95099 1.02285 1.02549 1.20457 0.93807 0.93321 0.84207 1.22048 1.02321 0.91931 1.04189 1.22222 1.01224 1.01394 0.97469 1.45924 1.53217 1.10733 1.25655 1.18280 0.79433 0.82474 0.84943 1.90643 1.39373 1.66807 1.47769 1.19895 1.08628 0.91911 0.98739 1.21521 0.93575 1.00805 0.91769 1.21495 1.01208 0.94112 0.98690 1.21600 0.94311 0.95221 0.97925 1.21340 1.00151 1.01153 0.95202 1.18144 0.92593 0.90251 0.90925 1.43861 1.41975 1.32838 1.11401 1.22610 0.79699 0.79071 0.90834 1.90608 1.67469 1.64811 1.20339 1.21576 0.91057 0.96081 0.93898 0.88117 1.58961 1.17326 1.18976 1.38905 1.21390 0.97168 0.96051 0.97292 1.18811 0.94965 0.94144 0.91737 1.21735 0.99211 1.22401 1.14867 0.92576 1.25944 0.96266 0.99332 0.98204 1.70128 1.15616 1.43152 1.28099 0.85432 0.78999 0.78518 0.78279 1.18771 1.20420 1.20267 0.92149 0.90717 0.93558 0.90664 0.89934 0.90643 0.93402 0.90761 0.92056 0.74814 0.81557 0.81334 0.83029 0.86165 0.73521 0.83742 0.84023 0.92155 0.93091 0.97242 0.99231 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.40 71.98 0.60 -2.32 16 2 C 0.17 2.41 1.06 3.60 0.00 2.42 16 3 C -0.15 -1.03 8.59 71.98 0.62 -0.41 16 4 C -0.17 -2.99 8.40 71.98 0.60 -2.39 16 5 N -0.70 -10.11 5.05 -426.06 -2.15 -12.26 16 6 C 0.56 12.70 7.16 86.69 0.62 13.32 16 7 O -0.57 -17.00 10.18 -4.02 -0.04 -17.04 16 8 C -0.19 -4.06 5.89 -19.99 -0.12 -4.17 16 9 C -0.06 -0.75 9.52 22.51 0.21 -0.54 16 10 C -0.14 -1.63 10.02 22.24 0.22 -1.41 16 11 C -0.07 -1.26 10.03 22.30 0.22 -1.03 16 12 C -0.16 -4.17 8.68 22.37 0.19 -3.98 16 13 C 0.18 5.01 6.30 38.60 0.24 5.26 16 14 N -0.65 -20.94 4.56 -302.95 -1.38 -22.32 16 15 C 0.49 17.39 6.91 87.66 0.61 18.00 16 16 O -0.55 -20.99 13.69 -3.02 -0.04 -21.03 16 17 C 0.09 3.40 3.15 44.17 0.14 3.53 16 18 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 19 N -0.81 -29.80 8.44 -171.80 -1.45 -31.25 16 20 C -0.08 -3.54 4.78 30.59 0.15 -3.39 16 21 C 0.04 2.24 4.86 29.85 0.15 2.38 16 22 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 23 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 24 C 0.00 0.02 5.46 84.66 0.46 0.48 16 25 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 26 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 27 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 29 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.18 6.16 -2.39 -0.01 1.17 16 33 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.05 1.22 6.16 -2.39 -0.01 1.21 16 37 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.41 2.97 6.53 -92.71 -0.61 2.37 16 40 H 0.17 0.71 6.44 -2.91 -0.02 0.69 16 41 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.12 3.75 6.23 -2.91 -0.02 3.73 16 44 H 0.42 13.77 6.55 -92.71 -0.61 13.16 16 45 H 0.35 12.61 8.58 -89.69 -0.77 11.84 16 46 H 0.35 11.16 9.06 -89.70 -0.81 10.35 16 47 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.01 0.55 7.75 -2.39 -0.02 0.53 16 50 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 51 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -77.83 409.60 0.59 -77.23 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: -1.81 Total: 43.17 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.16 Total: -6.16 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -4.70 Total: -123.94 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.08 Total: -38.07 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -77.83 0.59 -77.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818056273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.590 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds