Wall clock time and date at job start Wed Apr 1 2020 04:37:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53010 * 109.46939 * 2 1
4 4 C 1.53001 * 109.47249 * 240.00473 * 2 1 3
5 5 C 1.52999 * 109.47615 * 120.00222 * 2 1 3
6 6 H 1.08999 * 109.45114 * 173.57686 * 5 2 1
7 7 C 1.53036 * 109.45956 * 53.60533 * 5 2 1
8 8 C 1.53189 * 109.31290 * 178.61533 * 7 5 2
9 9 N 1.46923 * 108.77623 * 54.63863 * 8 7 5
10 10 C 1.34778 * 120.63336 * 126.41373 * 9 8 7
11 11 O 1.21570 * 120.00081 * 174.85589 * 10 9 8
12 12 N 1.34775 * 119.99720 * 354.85465 * 10 9 8
13 13 C 1.39461 * 119.99873 * 185.89864 * 12 10 9
14 14 C 1.38647 * 119.65043 * 18.44659 * 13 12 10
15 15 C 1.40816 * 118.67768 * 179.76169 * 14 13 12
16 16 C 1.41544 * 121.00210 * 180.25727 * 15 14 13
17 17 H 1.07995 * 120.00289 * 208.38020 * 16 15 14
18 18 C 1.40033 * 119.99855 * 28.37369 * 16 15 14
19 19 N 1.30748 * 119.99711 * 12.31189 * 18 16 15
20 20 Si 1.86795 * 120.00378 * 192.30526 * 18 16 15
21 21 H 1.48498 * 109.46914 * 59.99848 * 20 18 16
22 22 H 1.48497 * 109.47289 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47060 * 300.00372 * 20 18 16
24 24 C 1.41166 * 118.00398 * 0.50085 * 15 14 13
25 25 C 1.36592 * 119.12623 * 359.73207 * 24 15 14
26 26 N 1.32074 * 121.25900 * 0.02577 * 25 24 15
27 27 C 1.46928 * 118.73884 * 306.39170 * 9 8 7
28 28 C 1.53039 * 109.45972 * 293.54104 * 5 2 1
29 29 H 1.09003 * 109.49668 * 301.33419 * 28 5 2
30 30 O 1.42904 * 109.52545 * 61.41404 * 28 5 2
31 31 H 1.09006 * 109.47067 * 309.57726 * 1 2 3
32 32 H 1.08996 * 109.47479 * 69.58188 * 1 2 3
33 33 H 1.09005 * 109.46902 * 189.58832 * 1 2 3
34 34 H 1.09002 * 109.46888 * 180.02562 * 3 2 1
35 35 H 1.08992 * 109.47090 * 300.00732 * 3 2 1
36 36 H 1.08996 * 109.46557 * 60.00285 * 3 2 1
37 37 H 1.09003 * 109.47081 * 299.99970 * 4 2 1
38 38 H 1.09008 * 109.46961 * 59.99616 * 4 2 1
39 39 H 1.08996 * 109.47323 * 179.97438 * 4 2 1
40 40 H 1.09007 * 109.49744 * 58.66782 * 7 5 2
41 41 H 1.09001 * 109.49880 * 298.56905 * 7 5 2
42 42 H 1.09006 * 109.58552 * 174.42854 * 8 7 5
43 43 H 1.08997 * 109.58850 * 294.84654 * 8 7 5
44 44 H 0.96998 * 120.00403 * 5.89371 * 12 10 9
45 45 H 1.08000 * 120.65797 * 359.97438 * 14 13 12
46 46 H 0.96996 * 119.99803 * 180.02562 * 19 18 16
47 47 H 1.08000 * 120.43782 * 179.71684 * 24 15 14
48 48 H 1.08003 * 119.37132 * 179.97438 * 25 24 15
49 49 H 1.08996 * 109.58971 * 173.39694 * 27 9 8
50 50 H 1.09007 * 109.58377 * 293.68035 * 27 9 8
51 51 H 0.96699 * 113.99961 * 179.85108 * 30 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7211 -1.2493
5 6 2.0401 -0.7213 1.2492
6 1 3.1240 -0.8217 1.1931
7 6 1.4029 -2.1102 1.3318
8 6 1.9422 -2.8424 2.5646
9 7 1.7162 -2.0035 3.7494
10 6 1.0696 -2.4944 4.8253
11 8 0.9707 -1.8227 5.8338
12 7 0.5327 -3.7298 4.7831
13 6 -0.2408 -4.1907 5.8480
14 6 -0.7742 -3.2840 6.7512
15 6 -1.5562 -3.7714 7.8160
16 6 -2.1290 -2.8893 8.7632
17 1 -2.3161 -3.2273 9.7717
18 6 -2.4530 -1.5784 8.3927
19 7 -2.4557 -1.2376 7.1304
20 14 -2.8815 -0.3165 9.7017
21 1 -1.7319 -0.1539 10.6275
22 1 -3.1842 0.9851 9.0542
23 1 -4.0695 -0.7779 10.4639
24 6 -1.7476 -5.1667 7.9134
25 6 -1.1777 -5.9828 6.9780
26 7 -0.4537 -5.4907 5.9890
27 6 2.2089 -0.6193 3.7393
28 6 1.6667 0.0879 2.4933
29 1 2.1015 1.0850 2.4228
30 8 0.2446 0.1932 2.5856
31 1 -0.3633 0.6548 0.7921
32 1 -0.3634 0.3585 -0.9630
33 1 -0.3633 -1.0134 0.1712
34 1 3.1300 1.4426 -0.0005
35 1 1.6765 1.9564 -0.8899
36 1 1.6766 1.9563 0.8900
37 1 1.6767 -1.7488 -1.2494
38 1 1.6766 -0.2072 -2.1393
39 1 3.1300 -0.7208 -1.2495
40 1 1.6500 -2.6778 0.4346
41 1 0.3206 -2.0097 1.4129
42 1 1.4193 -3.7915 2.6837
43 1 3.0101 -3.0240 2.4437
44 1 0.6842 -4.2984 4.0119
45 1 -0.5962 -2.2248 6.6384
46 1 -2.6798 -0.3294 6.8738
47 1 -2.3366 -5.5834 8.7170
48 1 -1.3211 -7.0509 7.0489
49 1 1.8621 -0.1014 4.6335
50 1 3.2988 -0.6196 3.7167
51 1 -0.0638 0.6928 3.3539
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000871728970.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:12
Heat of formation + Delta-G solvation = -36.759475 kcal
Electronic energy + Delta-G solvation = -32389.406241 eV
Core-core repulsion = 28288.965450 eV
Total energy + Delta-G solvation = -4100.440790 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.71245 -39.38833 -37.88573 -36.08823 -35.33366 -34.35230 -33.55174 -31.30452
-30.53306 -30.21396 -28.28412 -27.48650 -27.25398 -25.82788 -25.23933 -23.05965
-22.23587 -21.52620 -20.74038 -19.38084 -18.74376 -18.23047 -17.37216 -16.78489
-15.96408 -15.82591 -15.23007 -15.10768 -15.00186 -14.59153 -14.41701 -14.28182
-14.18469 -13.74668 -13.61518 -13.21707 -12.97893 -12.89148 -12.72067 -12.55126
-12.41619 -12.37599 -12.16896 -11.98690 -11.80121 -11.51335 -11.41979 -11.32828
-11.12938 -10.96640 -10.85232 -10.52987 -10.45391 -10.33897 -10.15594 -10.07255
-9.88173 -9.67227 -9.23898 -8.94755 -8.33445 -7.99743 -7.79536 -6.89800
-6.66113 -4.45670 2.73357 2.90386 2.97950 3.10343 3.13614 3.29865
3.78977 3.97947 4.15390 4.22841 4.46436 4.60703 4.65867 4.80009
4.89370 4.90756 5.07494 5.10478 5.23926 5.28440 5.43303 5.49623
5.57456 5.62844 5.63841 5.70076 5.72553 5.74146 5.78973 5.82135
5.88796 5.93706 5.96644 6.02180 6.19781 6.21307 6.42786 6.53782
6.60224 6.63027 6.83221 6.89304 7.11119 7.24575 7.30792 7.58904
7.69587 7.73097 8.02148 8.22343 8.47366 8.61881 8.88760 8.95136
9.15687 9.63519 10.25344
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013077 B = 0.003329 C = 0.002859
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2140.608798 B = 8409.638317 C = 9792.969519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.059 4.059
3 C -0.143 4.143
4 C -0.143 4.143
5 C -0.066 4.066
6 H 0.078 0.922
7 C -0.131 4.131
8 C 0.111 3.889
9 N -0.621 5.621
10 C 0.710 3.290
11 O -0.554 6.554
12 N -0.663 5.663
13 C 0.334 3.666
14 C -0.212 4.212
15 C 0.135 3.865
16 C -0.456 4.456
17 H 0.080 0.920
18 C 0.078 3.922
19 N -0.779 5.779
20 Si 0.912 3.088
21 H -0.264 1.264
22 H -0.278 1.278
23 H -0.266 1.266
24 C -0.286 4.286
25 C 0.118 3.882
26 N -0.605 5.605
27 C 0.099 3.901
28 C 0.094 3.906
29 H 0.065 0.935
30 O -0.546 6.546
31 H 0.083 0.917
32 H 0.037 0.963
33 H 0.056 0.944
34 H 0.050 0.950
35 H 0.052 0.948
36 H 0.059 0.941
37 H 0.057 0.943
38 H 0.052 0.948
39 H 0.051 0.949
40 H 0.072 0.928
41 H 0.086 0.914
42 H 0.077 0.923
43 H 0.064 0.936
44 H 0.395 0.605
45 H 0.170 0.830
46 H 0.281 0.719
47 H 0.100 0.900
48 H 0.122 0.878
49 H 0.097 0.903
50 H 0.066 0.934
51 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.379 5.717 -15.429 18.940
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.059 4.059
3 C -0.201 4.201
4 C -0.201 4.201
5 C -0.084 4.084
6 H 0.096 0.904
7 C -0.169 4.169
8 C -0.012 4.012
9 N -0.360 5.360
10 C 0.412 3.588
11 O -0.429 6.429
12 N -0.311 5.311
13 C 0.112 3.888
14 C -0.236 4.236
15 C 0.127 3.873
16 C -0.487 4.487
17 H 0.098 0.902
18 C -0.142 4.142
19 N -0.404 5.404
20 Si 0.736 3.264
21 H -0.188 1.188
22 H -0.203 1.203
23 H -0.191 1.191
24 C -0.310 4.310
25 C -0.036 4.036
26 N -0.326 5.326
27 C -0.025 4.025
28 C 0.034 3.966
29 H 0.083 0.917
30 O -0.352 6.352
31 H 0.101 0.899
32 H 0.056 0.944
33 H 0.075 0.925
34 H 0.069 0.931
35 H 0.071 0.929
36 H 0.078 0.922
37 H 0.076 0.924
38 H 0.071 0.929
39 H 0.070 0.930
40 H 0.090 0.910
41 H 0.105 0.895
42 H 0.095 0.905
43 H 0.082 0.918
44 H 0.231 0.769
45 H 0.187 0.813
46 H 0.092 0.908
47 H 0.119 0.881
48 H 0.140 0.860
49 H 0.115 0.885
50 H 0.085 0.915
51 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges 9.678 5.511 -16.047 19.533
hybrid contribution -0.466 1.002 1.145 1.591
sum 9.211 6.513 -14.902 18.691
Atomic orbital electron populations
1.22099 0.93636 1.03204 1.01141 1.20466 0.96757 0.94756 0.93917
1.21948 1.00355 0.95908 1.01842 1.21939 1.00519 1.00514 0.97084
1.21174 0.99436 0.94801 0.93037 0.90378 1.22059 1.02713 0.95141
0.96994 1.21627 1.00365 0.93860 0.85397 1.47032 1.61098 1.12901
1.14996 1.15610 0.78371 0.81645 0.83194 1.90895 1.62657 1.59291
1.30104 1.42328 1.52669 1.15194 1.20915 1.17848 0.92668 0.89593
0.88712 1.22741 1.00592 1.02368 0.97939 1.17800 0.87213 0.91019
0.91309 1.19505 1.36044 0.95190 0.97971 0.90224 1.25920 0.93238
0.99125 0.95930 1.69752 1.33624 1.20099 1.16913 0.86315 0.79739
0.79086 0.81217 1.18808 1.20306 1.19057 1.21637 1.10217 0.95240
1.03911 1.21192 0.94165 0.97716 0.90479 1.66530 1.25144 1.13219
1.27692 1.22165 0.98283 0.82113 0.99914 1.22236 0.82810 0.97369
0.94217 0.91715 1.86616 1.19967 1.78758 1.49830 0.89887 0.94406
0.92475 0.93095 0.92935 0.92224 0.92440 0.92919 0.93019 0.90977
0.89548 0.90481 0.91760 0.76897 0.81280 0.90821 0.88137 0.86025
0.88467 0.91547 0.77690
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.48 7.34 37.16 0.27 -1.21 16
2 C -0.06 -0.51 0.58 -154.50 -0.09 -0.60 16
3 C -0.14 -1.13 7.93 37.16 0.29 -0.84 16
4 C -0.14 -1.09 8.24 37.16 0.31 -0.79 16
5 C -0.07 -0.60 1.48 -90.58 -0.13 -0.74 16
6 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
7 C -0.13 -1.33 4.47 -26.61 -0.12 -1.45 16
8 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16
9 N -0.62 -9.20 2.91 -178.50 -0.52 -9.72 16
10 C 0.71 14.44 8.14 -86.92 -0.71 13.73 16
11 O -0.55 -13.56 12.59 5.30 0.07 -13.49 16
12 N -0.66 -13.90 5.33 -15.87 -0.08 -13.98 16
13 C 0.33 8.52 7.52 -154.68 -1.16 7.35 16
14 C -0.21 -5.95 7.47 -38.46 -0.29 -6.24 16
15 C 0.14 3.80 5.57 -106.55 -0.59 3.21 16
16 C -0.46 -12.54 9.12 -37.65 -0.34 -12.89 16
17 H 0.08 2.07 7.88 -52.49 -0.41 1.66 16
18 C 0.08 2.02 5.26 -17.34 -0.09 1.93 16
19 N -0.78 -20.93 10.97 55.55 0.61 -20.32 16
20 Si 0.91 19.32 29.58 -169.99 -5.03 14.29 16
21 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16
23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16
24 C -0.29 -7.26 9.85 -39.07 -0.38 -7.65 16
25 C 0.12 2.82 11.10 -18.04 -0.20 2.62 16
26 N -0.60 -14.99 10.36 -12.75 -0.13 -15.12 16
27 C 0.10 1.23 6.06 -3.71 -0.02 1.21 16
28 C 0.09 0.95 2.73 -26.61 -0.07 0.88 16
29 H 0.07 0.56 6.25 -51.93 -0.32 0.23 16
30 O -0.55 -6.57 9.05 -35.23 -0.32 -6.89 16
31 H 0.08 0.96 5.71 -51.93 -0.30 0.66 16
32 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16
33 H 0.06 0.65 5.82 -51.93 -0.30 0.34 16
34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.06 0.49 6.30 -51.93 -0.33 0.16 16
37 H 0.06 0.44 6.58 -51.93 -0.34 0.10 16
38 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16
39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.61 6.55 -51.92 -0.34 0.27 16
41 H 0.09 1.09 5.69 -51.93 -0.30 0.80 16
42 H 0.08 0.89 5.57 -51.93 -0.29 0.60 16
43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
44 H 0.39 7.01 6.28 -40.82 -0.26 6.75 16
45 H 0.17 4.98 3.65 -52.50 -0.19 4.79 16
46 H 0.28 6.90 8.29 -40.82 -0.34 6.57 16
47 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16
48 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16
49 H 0.10 1.41 7.04 -51.93 -0.37 1.04 16
50 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16
51 H 0.38 4.12 9.08 45.56 0.41 4.53 16
LS Contribution 383.32 15.07 5.78 5.78
Total: -1.00 -32.66 383.32 -9.68 -42.34
By element:
Atomic # 1 Polarization: 24.02 SS G_CDS: -6.69 Total: 17.32 kcal
Atomic # 6 Polarization: 3.15 SS G_CDS: -3.36 Total: -0.21 kcal
Atomic # 7 Polarization: -59.02 SS G_CDS: -0.13 Total: -59.15 kcal
Atomic # 8 Polarization: -20.12 SS G_CDS: -0.25 Total: -20.38 kcal
Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -32.66 -9.68 -42.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871728970.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.576 kcal
(2) G-P(sol) polarization free energy of solvation -32.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds