Wall clock time and date at job start Wed Apr 1 2020 04:37:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53010 * 109.46939 * 2 1
4 4 C 1.53001 * 109.47249 * 240.00473 * 2 1 3
5 5 C 1.52999 * 109.47615 * 120.00222 * 2 1 3
6 6 H 1.08999 * 109.45114 * 173.57686 * 5 2 1
7 7 C 1.53036 * 109.45956 * 53.60533 * 5 2 1
8 8 C 1.53189 * 109.31290 * 178.61533 * 7 5 2
9 9 N 1.46923 * 108.77623 * 54.63863 * 8 7 5
10 10 C 1.34778 * 120.63336 * 126.41373 * 9 8 7
11 11 O 1.21570 * 120.00081 * 174.85589 * 10 9 8
12 12 N 1.34775 * 119.99720 * 354.85465 * 10 9 8
13 13 C 1.39461 * 119.99873 * 185.89864 * 12 10 9
14 14 C 1.38647 * 119.65043 * 18.44659 * 13 12 10
15 15 C 1.40816 * 118.67768 * 179.76169 * 14 13 12
16 16 C 1.41544 * 121.00210 * 180.25727 * 15 14 13
17 17 H 1.07995 * 120.00289 * 208.38020 * 16 15 14
18 18 C 1.40033 * 119.99855 * 28.37369 * 16 15 14
19 19 N 1.30748 * 119.99711 * 12.31189 * 18 16 15
20 20 Si 1.86795 * 120.00378 * 192.30526 * 18 16 15
21 21 H 1.48498 * 109.46914 * 59.99848 * 20 18 16
22 22 H 1.48497 * 109.47289 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47060 * 300.00372 * 20 18 16
24 24 C 1.41166 * 118.00398 * 0.50085 * 15 14 13
25 25 C 1.36592 * 119.12623 * 359.73207 * 24 15 14
26 26 N 1.32074 * 121.25900 * 0.02577 * 25 24 15
27 27 C 1.46928 * 118.73884 * 306.39170 * 9 8 7
28 28 C 1.53039 * 109.45972 * 293.54104 * 5 2 1
29 29 H 1.09003 * 109.49668 * 301.33419 * 28 5 2
30 30 O 1.42904 * 109.52545 * 61.41404 * 28 5 2
31 31 H 1.09006 * 109.47067 * 309.57726 * 1 2 3
32 32 H 1.08996 * 109.47479 * 69.58188 * 1 2 3
33 33 H 1.09005 * 109.46902 * 189.58832 * 1 2 3
34 34 H 1.09002 * 109.46888 * 180.02562 * 3 2 1
35 35 H 1.08992 * 109.47090 * 300.00732 * 3 2 1
36 36 H 1.08996 * 109.46557 * 60.00285 * 3 2 1
37 37 H 1.09003 * 109.47081 * 299.99970 * 4 2 1
38 38 H 1.09008 * 109.46961 * 59.99616 * 4 2 1
39 39 H 1.08996 * 109.47323 * 179.97438 * 4 2 1
40 40 H 1.09007 * 109.49744 * 58.66782 * 7 5 2
41 41 H 1.09001 * 109.49880 * 298.56905 * 7 5 2
42 42 H 1.09006 * 109.58552 * 174.42854 * 8 7 5
43 43 H 1.08997 * 109.58850 * 294.84654 * 8 7 5
44 44 H 0.96998 * 120.00403 * 5.89371 * 12 10 9
45 45 H 1.08000 * 120.65797 * 359.97438 * 14 13 12
46 46 H 0.96996 * 119.99803 * 180.02562 * 19 18 16
47 47 H 1.08000 * 120.43782 * 179.71684 * 24 15 14
48 48 H 1.08003 * 119.37132 * 179.97438 * 25 24 15
49 49 H 1.08996 * 109.58971 * 173.39694 * 27 9 8
50 50 H 1.09007 * 109.58377 * 293.68035 * 27 9 8
51 51 H 0.96699 * 113.99961 * 179.85108 * 30 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7211 -1.2493
5 6 2.0401 -0.7213 1.2492
6 1 3.1240 -0.8217 1.1931
7 6 1.4029 -2.1102 1.3318
8 6 1.9422 -2.8424 2.5646
9 7 1.7162 -2.0035 3.7494
10 6 1.0696 -2.4944 4.8253
11 8 0.9707 -1.8227 5.8338
12 7 0.5327 -3.7298 4.7831
13 6 -0.2408 -4.1907 5.8480
14 6 -0.7742 -3.2840 6.7512
15 6 -1.5562 -3.7714 7.8160
16 6 -2.1290 -2.8893 8.7632
17 1 -2.3161 -3.2273 9.7717
18 6 -2.4530 -1.5784 8.3927
19 7 -2.4557 -1.2376 7.1304
20 14 -2.8815 -0.3165 9.7017
21 1 -1.7319 -0.1539 10.6275
22 1 -3.1842 0.9851 9.0542
23 1 -4.0695 -0.7779 10.4639
24 6 -1.7476 -5.1667 7.9134
25 6 -1.1777 -5.9828 6.9780
26 7 -0.4537 -5.4907 5.9890
27 6 2.2089 -0.6193 3.7393
28 6 1.6667 0.0879 2.4933
29 1 2.1015 1.0850 2.4228
30 8 0.2446 0.1932 2.5856
31 1 -0.3633 0.6548 0.7921
32 1 -0.3634 0.3585 -0.9630
33 1 -0.3633 -1.0134 0.1712
34 1 3.1300 1.4426 -0.0005
35 1 1.6765 1.9564 -0.8899
36 1 1.6766 1.9563 0.8900
37 1 1.6767 -1.7488 -1.2494
38 1 1.6766 -0.2072 -2.1393
39 1 3.1300 -0.7208 -1.2495
40 1 1.6500 -2.6778 0.4346
41 1 0.3206 -2.0097 1.4129
42 1 1.4193 -3.7915 2.6837
43 1 3.0101 -3.0240 2.4437
44 1 0.6842 -4.2984 4.0119
45 1 -0.5962 -2.2248 6.6384
46 1 -2.6798 -0.3294 6.8738
47 1 -2.3366 -5.5834 8.7170
48 1 -1.3211 -7.0509 7.0489
49 1 1.8621 -0.1014 4.6335
50 1 3.2988 -0.6196 3.7167
51 1 -0.0638 0.6928 3.3539
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000871728970.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:11
Heat of formation + Delta-G solvation = -57.931929 kcal
Electronic energy + Delta-G solvation = -32390.324347 eV
Core-core repulsion = 28288.965450 eV
Total energy + Delta-G solvation = -4101.358897 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.99639 -40.71201 -39.57550 -37.04048 -36.51722 -36.18005 -35.37281 -32.46797
-32.30237 -31.37306 -29.97099 -28.14728 -28.00605 -27.84039 -26.35455 -24.13498
-23.84788 -23.23344 -22.05778 -20.72276 -20.12987 -19.40674 -18.88837 -17.98884
-17.56831 -17.05317 -16.92251 -16.52273 -16.05481 -15.96510 -15.84808 -15.60687
-15.31507 -15.07821 -14.77599 -14.60141 -14.37318 -14.22884 -14.16081 -13.79805
-13.65604 -13.37574 -13.13430 -13.06190 -12.92598 -12.78710 -12.68167 -12.51311
-12.41219 -12.31727 -12.10645 -11.95947 -11.74990 -11.51254 -11.26752 -11.21777
-11.13984 -10.89004 -10.82308 -10.69318 -9.99781 -9.83988 -9.53740 -8.77999
-8.60565 -6.52732 0.82660 1.04427 1.35962 1.48604 1.49082 1.53938
2.16002 2.20306 2.80193 2.84458 3.37265 3.65626 3.76268 3.78225
3.85037 3.99779 4.10665 4.18190 4.30378 4.32594 4.42265 4.48156
4.65697 4.71151 4.75385 4.79290 4.81038 4.87320 4.90452 4.93827
4.94904 4.95530 5.00808 5.07971 5.17767 5.19159 5.21690 5.32012
5.33789 5.46971 5.49171 5.52281 5.61236 5.67175 5.70926 5.77988
5.84875 6.06629 6.33523 6.58325 6.77828 6.83673 6.86295 6.95416
7.55784 7.67987 8.32112
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013077 B = 0.003329 C = 0.002859
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2140.608798 B = 8409.638317 C = 9792.969519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.055 4.055
3 C -0.142 4.142
4 C -0.141 4.141
5 C -0.064 4.064
6 H 0.102 0.898
7 C -0.124 4.124
8 C 0.104 3.896
9 N -0.609 5.609
10 C 0.702 3.298
11 O -0.602 6.602
12 N -0.657 5.657
13 C 0.334 3.666
14 C -0.249 4.249
15 C 0.103 3.897
16 C -0.491 4.491
17 H 0.084 0.916
18 C 0.033 3.967
19 N -0.810 5.810
20 Si 0.987 3.013
21 H -0.263 1.263
22 H -0.267 1.267
23 H -0.253 1.253
24 C -0.301 4.301
25 C 0.120 3.880
26 N -0.605 5.605
27 C 0.094 3.906
28 C 0.097 3.903
29 H 0.088 0.912
30 O -0.561 6.561
31 H 0.066 0.934
32 H 0.040 0.960
33 H 0.042 0.958
34 H 0.065 0.935
35 H 0.053 0.947
36 H 0.052 0.948
37 H 0.056 0.944
38 H 0.053 0.947
39 H 0.065 0.935
40 H 0.096 0.904
41 H 0.057 0.943
42 H 0.073 0.927
43 H 0.096 0.904
44 H 0.410 0.590
45 H 0.153 0.847
46 H 0.286 0.714
47 H 0.117 0.883
48 H 0.166 0.834
49 H 0.069 0.931
50 H 0.094 0.906
51 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.865 5.853 -16.919 20.942
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.055 4.055
3 C -0.199 4.199
4 C -0.198 4.198
5 C -0.082 4.082
6 H 0.120 0.880
7 C -0.162 4.162
8 C -0.018 4.018
9 N -0.346 5.346
10 C 0.404 3.596
11 O -0.481 6.481
12 N -0.307 5.307
13 C 0.110 3.890
14 C -0.273 4.273
15 C 0.094 3.906
16 C -0.521 4.521
17 H 0.102 0.898
18 C -0.184 4.184
19 N -0.435 5.435
20 Si 0.807 3.193
21 H -0.188 1.188
22 H -0.191 1.191
23 H -0.177 1.177
24 C -0.325 4.325
25 C -0.033 4.033
26 N -0.326 5.326
27 C -0.029 4.029
28 C 0.038 3.962
29 H 0.105 0.895
30 O -0.368 6.368
31 H 0.085 0.915
32 H 0.059 0.941
33 H 0.061 0.939
34 H 0.084 0.916
35 H 0.072 0.928
36 H 0.071 0.929
37 H 0.075 0.925
38 H 0.072 0.928
39 H 0.084 0.916
40 H 0.115 0.885
41 H 0.076 0.924
42 H 0.091 0.909
43 H 0.114 0.886
44 H 0.249 0.751
45 H 0.170 0.830
46 H 0.097 0.903
47 H 0.135 0.865
48 H 0.183 0.817
49 H 0.088 0.912
50 H 0.112 0.888
51 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges 11.193 5.633 -17.615 21.618
hybrid contribution -0.884 0.909 1.495 1.960
sum 10.310 6.542 -16.121 20.223
Atomic orbital electron populations
1.22060 0.95339 1.01846 1.00637 1.20423 0.95248 0.95528 0.94262
1.21930 1.01255 0.95083 1.01635 1.21916 1.01373 1.00228 0.96309
1.21242 1.00671 0.93799 0.92493 0.87974 1.21993 1.00907 0.96127
0.97160 1.21954 1.02356 0.93243 0.84239 1.47109 1.59179 1.14050
1.14280 1.15896 0.78613 0.81079 0.84010 1.90860 1.64481 1.60245
1.32479 1.42209 1.52180 1.15901 1.20416 1.18053 0.92210 0.89631
0.89084 1.22731 1.02595 1.02266 0.99755 1.18265 0.87709 0.92686
0.91916 1.19840 1.37387 0.96635 0.98281 0.89800 1.26869 0.92548
1.00740 0.98200 1.69840 1.33936 1.20799 1.18935 0.85188 0.79676
0.76392 0.78032 1.18771 1.19091 1.17654 1.21880 1.11035 0.94509
1.05092 1.21874 0.92550 0.99645 0.89274 1.66740 1.25393 1.12503
1.27995 1.22423 0.99816 0.80635 1.00033 1.22380 0.81837 0.98395
0.93593 0.89494 1.86625 1.21394 1.78891 1.49873 0.91498 0.94086
0.93925 0.91595 0.92799 0.92884 0.92513 0.92788 0.91594 0.88532
0.92442 0.90888 0.88576 0.75117 0.82997 0.90311 0.86499 0.81665
0.91240 0.88764 0.77678
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.83 7.34 71.98 0.53 -2.30 16
2 C -0.05 -0.81 0.58 -52.18 -0.03 -0.84 16
3 C -0.14 -1.87 7.93 71.99 0.57 -1.30 16
4 C -0.14 -1.71 8.24 71.98 0.59 -1.12 16
5 C -0.06 -0.99 1.48 -10.77 -0.02 -1.01 16
6 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16
7 C -0.12 -2.26 4.47 30.67 0.14 -2.12 16
8 C 0.10 2.17 6.43 86.36 0.56 2.73 16
9 N -0.61 -17.80 2.91 -836.93 -2.44 -20.24 16
10 C 0.70 29.40 8.14 179.05 1.46 30.85 16
11 O -0.60 -31.04 12.59 -3.94 -0.05 -31.09 16
12 N -0.66 -28.08 5.33 -322.38 -1.72 -29.80 16
13 C 0.33 17.46 7.52 132.76 1.00 18.46 16
14 C -0.25 -14.59 7.47 23.00 0.17 -14.42 16
15 C 0.10 6.00 5.57 -21.11 -0.12 5.88 16
16 C -0.49 -27.96 9.12 23.52 0.21 -27.75 16
17 H 0.08 4.50 7.88 -2.91 -0.02 4.48 16
18 C 0.03 1.78 5.26 85.29 0.45 2.23 16
19 N -0.81 -45.35 10.97 21.84 0.24 -45.12 16
20 Si 0.99 40.32 29.58 68.60 2.03 42.35 16
21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
22 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16
23 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16
24 C -0.30 -15.48 9.85 22.60 0.22 -15.26 16
25 C 0.12 5.62 11.10 84.27 0.94 6.56 16
26 N -0.61 -29.86 10.36 -194.26 -2.01 -31.88 16
27 C 0.09 2.27 6.06 86.36 0.52 2.79 16
28 C 0.10 1.85 2.73 30.67 0.08 1.94 16
29 H 0.09 1.32 6.25 -2.39 -0.01 1.30 16
30 O -0.56 -13.84 9.05 -148.98 -1.35 -15.19 16
31 H 0.07 1.56 5.71 -2.38 -0.01 1.54 16
32 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16
33 H 0.04 0.96 5.82 -2.38 -0.01 0.95 16
34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
36 H 0.05 0.77 6.30 -2.39 -0.02 0.75 16
37 H 0.06 0.70 6.58 -2.39 -0.02 0.68 16
38 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16
39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
40 H 0.10 1.33 6.55 -2.38 -0.02 1.31 16
41 H 0.06 1.43 5.69 -2.39 -0.01 1.41 16
42 H 0.07 1.58 5.57 -2.38 -0.01 1.57 16
43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
44 H 0.41 14.50 6.28 -92.71 -0.58 13.92 16
45 H 0.15 9.49 3.65 -3.15 -0.01 9.48 16
46 H 0.29 14.63 8.29 -92.71 -0.77 13.86 16
47 H 0.12 5.44 8.06 -2.91 -0.02 5.42 16
48 H 0.17 6.16 8.06 -2.91 -0.02 6.14 16
49 H 0.07 2.10 7.04 -2.39 -0.02 2.08 16
50 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16
51 H 0.38 8.88 9.08 -74.06 -0.67 8.21 16
Total: -1.00 -75.02 383.32 1.70 -73.32
By element:
Atomic # 1 Polarization: 52.61 SS G_CDS: -0.27 Total: 52.34 kcal
Atomic # 6 Polarization: -1.97 SS G_CDS: 7.28 Total: 5.30 kcal
Atomic # 7 Polarization: -121.10 SS G_CDS: -5.93 Total: -127.04 kcal
Atomic # 8 Polarization: -44.88 SS G_CDS: -1.40 Total: -46.27 kcal
Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal
Total: -75.02 1.70 -73.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871728970.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.389 kcal
(2) G-P(sol) polarization free energy of solvation -75.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.932 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds