Wall clock time and date at job start Wed Apr 1 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46865 * 2 1 4 4 C 1.52997 * 109.46992 * 240.00160 * 2 1 3 5 5 C 1.53003 * 109.47084 * 119.99930 * 2 1 3 6 6 H 1.09001 * 109.45508 * 185.81122 * 5 2 1 7 7 C 1.53040 * 109.45835 * 65.83440 * 5 2 1 8 8 C 1.53195 * 109.31117 * 178.62337 * 7 5 2 9 9 N 1.46923 * 108.77053 * 54.63664 * 8 7 5 10 10 C 1.34780 * 120.62666 * 126.37014 * 9 8 7 11 11 O 1.21587 * 119.99837 * 185.32906 * 10 9 8 12 12 N 1.34770 * 120.00200 * 5.32799 * 10 9 8 13 13 C 1.39459 * 120.00200 * 174.97369 * 12 10 9 14 14 C 1.38646 * 119.65200 * 185.39596 * 13 12 10 15 15 C 1.40815 * 118.67890 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99911 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99896 * 327.84272 * 16 15 14 18 18 C 1.40026 * 120.00107 * 147.84675 * 16 15 14 19 19 N 1.30740 * 120.00158 * 1.75836 * 18 16 15 20 20 Si 1.86801 * 119.99920 * 181.76261 * 18 16 15 21 21 H 1.48503 * 109.47318 * 59.99765 * 20 18 16 22 22 H 1.48504 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47237 * 299.99378 * 20 18 16 24 24 C 1.41168 * 118.00328 * 359.97438 * 15 14 13 25 25 C 1.36586 * 119.12587 * 0.02562 * 24 15 14 26 26 N 1.32064 * 121.26257 * 0.02562 * 25 24 15 27 27 C 1.46925 * 118.74537 * 306.63998 * 9 8 7 28 28 C 1.52761 * 109.00440 * 53.31175 * 27 9 8 29 29 H 1.09000 * 109.38710 * 65.51550 * 28 27 9 30 30 O 1.42899 * 109.56717 * 185.55342 * 28 27 9 31 31 H 1.09006 * 109.47230 * 299.99799 * 1 2 3 32 32 H 1.08995 * 109.47343 * 59.99888 * 1 2 3 33 33 H 1.08996 * 109.47013 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47094 * 169.05126 * 3 2 1 35 35 H 1.08999 * 109.47368 * 289.05222 * 3 2 1 36 36 H 1.09005 * 109.47505 * 49.05134 * 3 2 1 37 37 H 1.09005 * 109.47106 * 299.99863 * 4 2 1 38 38 H 1.09003 * 109.47121 * 59.99497 * 4 2 1 39 39 H 1.08995 * 109.47028 * 180.02562 * 4 2 1 40 40 H 1.09003 * 109.49472 * 58.67753 * 7 5 2 41 41 H 1.08994 * 109.52800 * 298.59744 * 7 5 2 42 42 H 1.09000 * 109.58470 * 294.84961 * 8 7 5 43 43 H 1.08998 * 109.58414 * 174.42152 * 8 7 5 44 44 H 0.96996 * 120.00017 * 354.97350 * 12 10 9 45 45 H 1.08002 * 120.66049 * 0.04141 * 14 13 12 46 46 H 0.97005 * 120.00306 * 180.02562 * 19 18 16 47 47 H 1.07998 * 120.43456 * 180.02562 * 24 15 14 48 48 H 1.08004 * 119.36768 * 180.02562 * 25 24 15 49 49 H 1.08999 * 109.58995 * 173.14616 * 27 9 8 50 50 H 1.08998 * 109.58460 * 293.57709 * 27 9 8 51 51 H 0.96692 * 114.00212 * 299.97167 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1251 -0.6319 1.3026 7 6 1.6530 -2.2002 1.1778 8 6 2.1949 -2.9259 2.4134 9 7 1.7142 -2.2338 3.6169 10 6 1.0654 -2.9107 4.5852 11 8 0.5877 -2.3122 5.5296 12 7 0.9462 -4.2508 4.5066 13 6 0.3681 -4.9623 5.5575 14 6 0.3503 -6.3481 5.5197 15 6 -0.2391 -7.0458 6.5915 16 6 -0.2847 -8.4605 6.6032 17 1 -0.3702 -9.0057 5.6748 18 6 -0.2191 -9.1531 7.8184 19 7 -0.1503 -8.4924 8.9445 20 14 -0.2296 -11.0210 7.8306 21 1 0.9379 -11.5276 7.0654 22 1 -0.1514 -11.5073 9.2316 23 1 -1.4831 -11.5131 7.2047 24 6 -0.7831 -6.2921 7.6539 25 6 -0.7187 -4.9287 7.6029 26 7 -0.1591 -4.3067 6.5811 27 6 1.9487 -0.7888 3.7422 28 6 1.4145 -0.0881 2.4943 29 1 0.3309 -0.1985 2.4532 30 8 1.7510 1.2998 2.5438 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1123 1.4488 0.1952 35 1 1.8448 1.8969 -0.9713 36 1 1.5261 2.0096 0.7762 37 1 1.6767 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 2.0795 -2.6448 0.2786 41 1 0.5673 -2.2917 1.1490 42 1 3.2847 -2.9138 2.3956 43 1 1.8388 -3.9561 2.4174 44 1 1.2624 -4.7204 3.7190 45 1 0.7801 -6.8819 4.6850 46 1 -0.1045 -8.9721 9.7864 47 1 -1.2442 -6.7869 8.4958 48 1 -1.1333 -4.3482 8.4138 49 1 1.4303 -0.4094 4.6228 50 1 3.0180 -0.5989 3.8350 51 1 1.3870 1.7657 3.3089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:20 Heat of formation + Delta-G solvation = -37.865833 kcal Electronic energy + Delta-G solvation = -31264.141226 eV Core-core repulsion = 27163.652460 eV Total energy + Delta-G solvation = -4100.488766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.75515 -39.41773 -38.01418 -36.28255 -35.69291 -34.50702 -33.57927 -31.39328 -30.63495 -30.19325 -28.34790 -27.56130 -27.39861 -26.00136 -25.29735 -23.15775 -22.15352 -21.75969 -20.94435 -19.39565 -18.82943 -18.13222 -17.73223 -17.13537 -16.17018 -15.79861 -15.47642 -15.21952 -15.08263 -14.70796 -14.38478 -14.26029 -14.15422 -13.94668 -13.53684 -13.49294 -13.10511 -13.01489 -12.86164 -12.58099 -12.42829 -12.30563 -12.23873 -12.15117 -11.87385 -11.80524 -11.43580 -11.40035 -11.26152 -11.18735 -10.94908 -10.64923 -10.53317 -10.38491 -10.20602 -10.13223 -10.00819 -9.74736 -9.57223 -9.36969 -8.50124 -7.95539 -7.74664 -7.01842 -6.68231 -4.63856 2.69658 2.75863 2.80468 3.02652 3.04770 3.22546 3.75402 3.86224 3.90447 4.13894 4.36228 4.41630 4.67624 4.72989 4.79841 4.87735 4.96910 5.01170 5.03661 5.20372 5.35573 5.43377 5.47370 5.54848 5.59405 5.60316 5.63149 5.67814 5.69590 5.77178 5.78181 5.87055 5.93496 5.95184 6.02400 6.11972 6.28331 6.40541 6.43980 6.55632 6.62531 6.77171 6.93212 7.11478 7.19461 7.42819 7.43253 7.55461 7.92227 8.04702 8.26321 8.49141 8.74145 8.77513 9.06657 9.70807 10.16029 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002166 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.976846 B =12923.578606 C =13678.864171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.066 4.066 6 H 0.077 0.923 7 C -0.134 4.134 8 C 0.109 3.891 9 N -0.632 5.632 10 C 0.696 3.304 11 O -0.528 6.528 12 N -0.669 5.669 13 C 0.361 3.639 14 C -0.299 4.299 15 C 0.145 3.855 16 C -0.459 4.459 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.800 5.800 20 Si 0.919 3.081 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.217 4.217 25 C 0.101 3.899 26 N -0.548 5.548 27 C 0.102 3.898 28 C 0.095 3.905 29 H 0.063 0.937 30 O -0.552 6.552 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.401 0.599 45 H 0.101 0.899 46 H 0.281 0.719 47 H 0.136 0.864 48 H 0.123 0.877 49 H 0.095 0.905 50 H 0.067 0.933 51 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 12.725 -16.469 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.084 4.084 6 H 0.095 0.905 7 C -0.172 4.172 8 C -0.015 4.015 9 N -0.374 5.374 10 C 0.397 3.603 11 O -0.399 6.399 12 N -0.319 5.319 13 C 0.132 3.868 14 C -0.325 4.325 15 C 0.137 3.863 16 C -0.491 4.491 17 H 0.097 0.903 18 C -0.144 4.144 19 N -0.426 5.426 20 Si 0.743 3.257 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.240 4.240 25 C -0.049 4.049 26 N -0.267 5.267 27 C -0.022 4.022 28 C 0.035 3.965 29 H 0.081 0.919 30 O -0.357 6.357 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.238 0.762 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.154 0.846 48 H 0.140 0.860 49 H 0.113 0.887 50 H 0.085 0.915 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.829 13.964 -16.028 21.799 hybrid contribution 0.048 -2.023 0.143 2.029 sum 4.876 11.941 -15.885 20.463 Atomic orbital electron populations 1.21983 0.94874 1.01630 1.01702 1.20465 0.95462 0.96027 0.93936 1.21997 1.01204 0.95155 1.01108 1.21984 1.00907 1.00343 0.97010 1.21161 1.00570 0.93642 0.93075 0.90468 1.22133 1.02323 0.94747 0.97998 1.21658 0.99242 0.96037 0.84537 1.47266 1.61741 1.08206 1.20177 1.15977 0.79547 0.81994 0.82748 1.91012 1.49788 1.66713 1.32392 1.42762 1.63227 1.05440 1.20479 1.17790 0.94076 0.87169 0.87758 1.21265 1.15020 0.91034 1.05189 1.17620 0.85837 0.93512 0.89338 1.19478 1.45128 0.90901 0.93543 0.90306 1.25936 0.92196 1.01322 0.94962 1.69713 1.36134 1.37958 0.98840 0.86199 0.79870 0.81502 0.78111 1.18990 1.20271 1.18876 1.22212 1.05567 0.93343 1.02874 1.21684 0.96430 0.92420 0.94409 1.67208 1.17457 1.39549 1.02476 1.22002 1.01159 0.79732 0.99348 1.22138 0.98646 0.81228 0.94474 0.91911 1.86651 1.78939 1.20737 1.49421 0.92359 0.92975 0.92709 0.93286 0.94197 0.89898 0.92372 0.92877 0.92772 0.89660 0.90862 0.91310 0.90302 0.76201 0.88066 0.90744 0.84649 0.85961 0.88692 0.91504 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 7.71 37.16 0.29 -0.91 16 2 C -0.06 -0.47 0.58 -154.51 -0.09 -0.56 16 3 C -0.14 -1.16 7.53 37.16 0.28 -0.88 16 4 C -0.15 -1.02 7.94 37.16 0.29 -0.73 16 5 C -0.07 -0.57 1.40 -90.57 -0.13 -0.69 16 6 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 7 C -0.13 -1.10 4.63 -26.61 -0.12 -1.23 16 8 C 0.11 1.07 6.39 -3.71 -0.02 1.05 16 9 N -0.63 -8.61 2.98 -178.77 -0.53 -9.14 16 10 C 0.70 13.18 8.26 -86.92 -0.72 12.46 16 11 O -0.53 -12.34 14.02 5.29 0.07 -12.27 16 12 N -0.67 -12.67 5.30 -15.86 -0.08 -12.75 16 13 C 0.36 8.56 7.42 -154.68 -1.15 7.41 16 14 C -0.30 -7.18 9.74 -38.46 -0.37 -7.55 16 15 C 0.15 3.83 5.59 -106.55 -0.60 3.23 16 16 C -0.46 -11.78 9.12 -37.65 -0.34 -12.12 16 17 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 18 C 0.07 1.79 5.43 -17.35 -0.09 1.70 16 19 N -0.80 -20.26 10.60 55.55 0.59 -19.67 16 20 Si 0.92 18.20 29.56 -169.99 -5.02 13.18 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.22 -5.67 8.73 -39.07 -0.34 -6.01 16 25 C 0.10 2.56 11.10 -18.05 -0.20 2.36 16 26 N -0.55 -14.20 7.86 -12.76 -0.10 -14.30 16 27 C 0.10 1.21 6.04 -3.93 -0.02 1.18 16 28 C 0.09 0.91 2.49 -26.83 -0.07 0.85 16 29 H 0.06 0.68 6.42 -51.93 -0.33 0.35 16 30 O -0.55 -4.67 9.67 -35.23 -0.34 -5.01 16 31 H 0.06 0.52 6.37 -51.93 -0.33 0.19 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.46 6.62 -51.93 -0.34 0.11 16 34 H 0.05 0.43 8.06 -51.93 -0.42 0.02 16 35 H 0.04 0.32 8.10 -51.93 -0.42 -0.11 16 36 H 0.08 0.76 5.65 -51.93 -0.29 0.46 16 37 H 0.06 0.38 6.31 -51.93 -0.33 0.05 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.56 6.26 -51.93 -0.32 0.24 16 41 H 0.07 0.68 6.66 -51.93 -0.35 0.33 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.73 5.65 -51.93 -0.29 0.44 16 44 H 0.40 5.98 6.19 -40.82 -0.25 5.73 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.28 6.52 8.29 -40.82 -0.34 6.18 16 47 H 0.14 3.60 6.13 -52.49 -0.32 3.27 16 48 H 0.12 2.78 8.06 -52.48 -0.42 2.36 16 49 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.37 2.08 9.08 45.56 0.41 2.49 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -32.30 386.92 -9.88 -42.18 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.88 Total: 12.41 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.41 Total: -0.44 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.13 Total: -55.87 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.27 Total: -17.28 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.30 -9.88 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.310 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds