Wall clock time and date at job start Wed Apr 1 2020 04:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46865 * 2 1 4 4 C 1.52997 * 109.46992 * 240.00160 * 2 1 3 5 5 C 1.53003 * 109.47084 * 119.99930 * 2 1 3 6 6 H 1.09001 * 109.45508 * 185.81122 * 5 2 1 7 7 C 1.53040 * 109.45835 * 65.83440 * 5 2 1 8 8 C 1.53195 * 109.31117 * 178.62337 * 7 5 2 9 9 N 1.46923 * 108.77053 * 54.63664 * 8 7 5 10 10 C 1.34780 * 120.62666 * 126.37014 * 9 8 7 11 11 O 1.21587 * 119.99837 * 185.32906 * 10 9 8 12 12 N 1.34770 * 120.00200 * 5.32799 * 10 9 8 13 13 C 1.39459 * 120.00200 * 174.97369 * 12 10 9 14 14 C 1.38646 * 119.65200 * 185.39596 * 13 12 10 15 15 C 1.40815 * 118.67890 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99911 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99896 * 327.84272 * 16 15 14 18 18 C 1.40026 * 120.00107 * 147.84675 * 16 15 14 19 19 N 1.30740 * 120.00158 * 1.75836 * 18 16 15 20 20 Si 1.86801 * 119.99920 * 181.76261 * 18 16 15 21 21 H 1.48503 * 109.47318 * 59.99765 * 20 18 16 22 22 H 1.48504 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47237 * 299.99378 * 20 18 16 24 24 C 1.41168 * 118.00328 * 359.97438 * 15 14 13 25 25 C 1.36586 * 119.12587 * 0.02562 * 24 15 14 26 26 N 1.32064 * 121.26257 * 0.02562 * 25 24 15 27 27 C 1.46925 * 118.74537 * 306.63998 * 9 8 7 28 28 C 1.52761 * 109.00440 * 53.31175 * 27 9 8 29 29 H 1.09000 * 109.38710 * 65.51550 * 28 27 9 30 30 O 1.42899 * 109.56717 * 185.55342 * 28 27 9 31 31 H 1.09006 * 109.47230 * 299.99799 * 1 2 3 32 32 H 1.08995 * 109.47343 * 59.99888 * 1 2 3 33 33 H 1.08996 * 109.47013 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47094 * 169.05126 * 3 2 1 35 35 H 1.08999 * 109.47368 * 289.05222 * 3 2 1 36 36 H 1.09005 * 109.47505 * 49.05134 * 3 2 1 37 37 H 1.09005 * 109.47106 * 299.99863 * 4 2 1 38 38 H 1.09003 * 109.47121 * 59.99497 * 4 2 1 39 39 H 1.08995 * 109.47028 * 180.02562 * 4 2 1 40 40 H 1.09003 * 109.49472 * 58.67753 * 7 5 2 41 41 H 1.08994 * 109.52800 * 298.59744 * 7 5 2 42 42 H 1.09000 * 109.58470 * 294.84961 * 8 7 5 43 43 H 1.08998 * 109.58414 * 174.42152 * 8 7 5 44 44 H 0.96996 * 120.00017 * 354.97350 * 12 10 9 45 45 H 1.08002 * 120.66049 * 0.04141 * 14 13 12 46 46 H 0.97005 * 120.00306 * 180.02562 * 19 18 16 47 47 H 1.07998 * 120.43456 * 180.02562 * 24 15 14 48 48 H 1.08004 * 119.36768 * 180.02562 * 25 24 15 49 49 H 1.08999 * 109.58995 * 173.14616 * 27 9 8 50 50 H 1.08998 * 109.58460 * 293.57709 * 27 9 8 51 51 H 0.96692 * 114.00212 * 299.97167 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1251 -0.6319 1.3026 7 6 1.6530 -2.2002 1.1778 8 6 2.1949 -2.9259 2.4134 9 7 1.7142 -2.2338 3.6169 10 6 1.0654 -2.9107 4.5852 11 8 0.5877 -2.3122 5.5296 12 7 0.9462 -4.2508 4.5066 13 6 0.3681 -4.9623 5.5575 14 6 0.3503 -6.3481 5.5197 15 6 -0.2391 -7.0458 6.5915 16 6 -0.2847 -8.4605 6.6032 17 1 -0.3702 -9.0057 5.6748 18 6 -0.2191 -9.1531 7.8184 19 7 -0.1503 -8.4924 8.9445 20 14 -0.2296 -11.0210 7.8306 21 1 0.9379 -11.5276 7.0654 22 1 -0.1514 -11.5073 9.2316 23 1 -1.4831 -11.5131 7.2047 24 6 -0.7831 -6.2921 7.6539 25 6 -0.7187 -4.9287 7.6029 26 7 -0.1591 -4.3067 6.5811 27 6 1.9487 -0.7888 3.7422 28 6 1.4145 -0.0881 2.4943 29 1 0.3309 -0.1985 2.4532 30 8 1.7510 1.2998 2.5438 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1123 1.4488 0.1952 35 1 1.8448 1.8969 -0.9713 36 1 1.5261 2.0096 0.7762 37 1 1.6767 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 2.0795 -2.6448 0.2786 41 1 0.5673 -2.2917 1.1490 42 1 3.2847 -2.9138 2.3956 43 1 1.8388 -3.9561 2.4174 44 1 1.2624 -4.7204 3.7190 45 1 0.7801 -6.8819 4.6850 46 1 -0.1045 -8.9721 9.7864 47 1 -1.2442 -6.7869 8.4958 48 1 -1.1333 -4.3482 8.4138 49 1 1.4303 -0.4094 4.6228 50 1 3.0180 -0.5989 3.8350 51 1 1.3870 1.7657 3.3089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:19 Heat of formation + Delta-G solvation = -57.654520 kcal Electronic energy + Delta-G solvation = -31264.999328 eV Core-core repulsion = 27163.652460 eV Total energy + Delta-G solvation = -4101.346868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.91094 -40.69901 -39.61886 -37.02718 -36.78834 -36.24158 -35.33373 -32.57334 -32.31638 -31.24494 -29.93217 -28.19342 -28.04282 -27.90612 -26.34880 -24.03144 -23.72962 -23.50152 -22.13520 -20.70167 -19.97498 -19.47195 -18.93431 -18.07286 -17.73627 -17.04370 -16.77240 -16.45182 -16.33015 -16.01414 -15.84098 -15.70341 -15.22684 -15.07551 -14.74623 -14.62924 -14.32641 -14.24790 -14.14431 -13.82537 -13.59685 -13.26252 -13.19419 -13.13556 -12.91842 -12.85042 -12.75574 -12.54904 -12.45971 -12.17791 -12.06011 -11.89196 -11.82978 -11.50761 -11.31462 -11.27848 -11.18391 -11.14301 -10.96379 -10.84354 -9.90764 -9.64792 -9.63882 -8.83723 -8.52633 -6.59705 0.81514 1.00115 1.41558 1.47080 1.54524 1.58153 2.20697 2.23607 2.76727 2.86506 3.27757 3.62515 3.68022 3.73242 3.87156 4.03705 4.07483 4.14792 4.21902 4.29305 4.31136 4.44662 4.62468 4.66752 4.72672 4.78450 4.81960 4.84190 4.85702 4.92056 4.93039 4.95036 5.03705 5.04517 5.06876 5.18459 5.20842 5.26283 5.28606 5.37531 5.47662 5.49006 5.53450 5.61525 5.64576 5.77050 5.80695 6.00422 6.22390 6.53649 6.77200 6.81726 6.84959 6.87068 7.53479 7.86961 8.33763 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002166 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.976846 B =12923.578606 C =13678.864171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.063 4.063 6 H 0.080 0.920 7 C -0.127 4.127 8 C 0.101 3.899 9 N -0.620 5.620 10 C 0.691 3.309 11 O -0.580 6.580 12 N -0.658 5.658 13 C 0.361 3.639 14 C -0.305 4.305 15 C 0.117 3.883 16 C -0.484 4.484 17 H 0.088 0.912 18 C 0.030 3.970 19 N -0.829 5.829 20 Si 0.995 3.005 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.236 4.236 25 C 0.095 3.905 26 N -0.574 5.574 27 C 0.100 3.900 28 C 0.107 3.893 29 H 0.050 0.950 30 O -0.553 6.553 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.420 0.580 45 H 0.126 0.874 46 H 0.289 0.711 47 H 0.124 0.876 48 H 0.137 0.863 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 11.783 -18.845 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.192 4.192 4 C -0.201 4.201 5 C -0.082 4.082 6 H 0.098 0.902 7 C -0.165 4.165 8 C -0.021 4.021 9 N -0.361 5.361 10 C 0.393 3.607 11 O -0.455 6.455 12 N -0.310 5.310 13 C 0.131 3.869 14 C -0.331 4.331 15 C 0.109 3.891 16 C -0.515 4.515 17 H 0.106 0.894 18 C -0.185 4.185 19 N -0.456 5.456 20 Si 0.815 3.185 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.181 1.181 24 C -0.260 4.260 25 C -0.055 4.055 26 N -0.294 5.294 27 C -0.023 4.023 28 C 0.047 3.953 29 H 0.067 0.933 30 O -0.360 6.360 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.261 0.739 45 H 0.144 0.856 46 H 0.100 0.900 47 H 0.142 0.858 48 H 0.154 0.846 49 H 0.090 0.910 50 H 0.097 0.903 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.125 13.059 -18.483 23.445 hybrid contribution -0.307 -1.599 0.850 1.837 sum 5.819 11.460 -17.634 21.820 Atomic orbital electron populations 1.21970 0.95210 1.01507 1.01402 1.20438 0.95106 0.95862 0.94198 1.21953 1.00777 0.95380 1.01041 1.21966 1.01209 1.00572 0.96305 1.21165 1.00573 0.93811 0.92634 0.90151 1.22114 1.01878 0.94406 0.98071 1.22012 1.00564 0.96260 0.83295 1.47272 1.60007 1.08802 1.19985 1.16176 0.79612 0.81794 0.83164 1.90977 1.52029 1.67612 1.34845 1.42589 1.62683 1.05681 1.20057 1.18036 0.93181 0.87655 0.88038 1.21447 1.14910 0.91301 1.05416 1.18038 0.86433 0.94455 0.90181 1.19814 1.46022 0.90994 0.94666 0.89421 1.26912 0.91039 1.06429 0.94088 1.69797 1.35986 1.40156 0.99646 0.85052 0.80179 0.74822 0.78435 1.18223 1.19555 1.18108 1.22161 1.06932 0.93731 1.03140 1.21928 0.96284 0.92402 0.94916 1.67313 1.18519 1.40200 1.03348 1.22141 1.01617 0.78803 0.99749 1.21953 0.97776 0.81667 0.93878 0.93258 1.86642 1.78997 1.20057 1.50256 0.93477 0.92489 0.92739 0.93648 0.93752 0.90806 0.91644 0.92629 0.92277 0.87028 0.91725 0.89185 0.89549 0.73943 0.85633 0.90040 0.85811 0.84557 0.91042 0.90319 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 7.71 71.98 0.55 -1.61 16 2 C -0.06 -0.77 0.58 -52.18 -0.03 -0.80 16 3 C -0.13 -2.02 7.53 71.98 0.54 -1.48 16 4 C -0.14 -1.59 7.94 71.98 0.57 -1.02 16 5 C -0.06 -0.94 1.40 -10.76 -0.02 -0.96 16 6 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 7 C -0.13 -1.74 4.63 30.67 0.14 -1.60 16 8 C 0.10 1.72 6.39 86.36 0.55 2.27 16 9 N -0.62 -16.28 2.98 -837.75 -2.49 -18.78 16 10 C 0.69 26.17 8.26 179.06 1.48 27.65 16 11 O -0.58 -27.84 14.02 -3.99 -0.06 -27.90 16 12 N -0.66 -24.56 5.30 -322.36 -1.71 -26.27 16 13 C 0.36 17.23 7.42 132.76 0.98 18.21 16 14 C -0.30 -14.65 9.74 23.00 0.22 -14.43 16 15 C 0.12 6.29 5.59 -21.11 -0.12 6.17 16 16 C -0.48 -24.91 9.12 23.52 0.21 -24.70 16 17 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 18 C 0.03 1.47 5.43 85.29 0.46 1.93 16 19 N -0.83 -42.48 10.60 21.84 0.23 -42.25 16 20 Si 0.99 36.50 29.56 68.60 2.03 38.53 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 22 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 24 C -0.24 -12.77 8.73 22.60 0.20 -12.57 16 25 C 0.10 4.99 11.10 84.27 0.94 5.92 16 26 N -0.57 -30.49 7.86 -194.27 -1.53 -32.02 16 27 C 0.10 2.33 6.04 86.22 0.52 2.85 16 28 C 0.11 1.96 2.49 30.53 0.08 2.03 16 29 H 0.05 1.05 6.42 -2.39 -0.02 1.04 16 30 O -0.55 -8.77 9.67 -148.98 -1.44 -10.21 16 31 H 0.05 0.81 6.37 -2.38 -0.02 0.79 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.82 6.62 -2.39 -0.02 0.80 16 34 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 35 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 36 H 0.07 1.25 5.65 -2.38 -0.01 1.24 16 37 H 0.06 0.63 6.31 -2.38 -0.02 0.62 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 1.02 6.26 -2.39 -0.01 1.00 16 41 H 0.06 1.05 6.66 -2.39 -0.02 1.03 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.36 5.65 -2.39 -0.01 1.34 16 44 H 0.42 11.84 6.19 -92.71 -0.57 11.26 16 45 H 0.13 5.24 8.06 -2.91 -0.02 5.21 16 46 H 0.29 13.42 8.29 -92.70 -0.77 12.66 16 47 H 0.12 6.87 6.13 -2.91 -0.02 6.85 16 48 H 0.14 6.45 8.06 -2.91 -0.02 6.43 16 49 H 0.07 2.02 6.99 -2.39 -0.02 2.00 16 50 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.39 4.07 9.08 -74.06 -0.67 3.39 16 Total: -1.00 -71.57 386.92 2.05 -69.52 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.27 Total: 41.52 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 7.29 Total: 7.86 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.50 Total: -119.32 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.50 Total: -38.11 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -71.57 2.05 -69.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.867 kcal (2) G-P(sol) polarization free energy of solvation -71.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds